RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 TAPBPO15533 448 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 SYT7O43581 403 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 EOMESO95936 686 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 LCATP04180 440 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 H1F0P07305 194 aaKnown RBP8.57□□□□□ -1.04
CLIP1-214ENST00000540539 NBEAP1P0C6P0 100 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 ACRP10323 421 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 NR2F1P10589 423 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 TDGF1P13385 188 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 HOXB2P14652 356 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 GZMHP20718 246 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 PPIBP23284 216 aaKnown RBP8.57□□□□□ -1.04
CLIP1-214ENST00000540539 MMP11P24347 488 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 DCAF7P61962 342 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 ZNF616Q08AN1 781 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 ADIGQ0VDE8 80 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 CPSF6Q16630 551 aaKnown RBP eCLIP8.57□□□□□ -1.04
CLIP1-214ENST00000540539 PRAMEF20Q5VT98 475 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 ZNF585AQ6P3V2 769 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 GALNT16Q8N428 558 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 APOBEC4Q8WW27 367 aaKnown RBP8.57□□□□□ -1.04
CLIP1-214ENST00000540539 LIPHQ8WWY8 451 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 BADQ92934 168 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 OR10A5Q9H207 317 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 EGLN3Q9H6Z9 239 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 CSNK1G1Q9HCP0 422 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 TRIM36Q9NQ86 728 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 OR2S2Q9NQN1 319 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 PARP11Q9NR21 331 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 SLC2A8Q9NY64 477 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 LTBP2Q14767 1821 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 TRAV1-2A0A0B4J238 106 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 GXYLT2A0PJZ3 443 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 NPIPA7E9PJI5 369 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 GOSR1O95249 250 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 UMODP07911 640 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 PGA4P0DJD7 388 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 PGA5P0DJD9 388 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 NPIPA8P0DM63 369 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 ACP5P13686 325 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 KCNE1P15382 129 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 EPCAMP16422 314 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 CD34P28906 385 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 TSFMP43897 325 aaKnown RBP8.57□□□□□ -1.04
CLIP1-214ENST00000540539 RPL34P49207 117 aaKnown RBP8.57□□□□□ -1.04
CLIP1-214ENST00000540539 TAF6P49848 677 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 VAMP2P63027 116 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 PTSQ03393 145 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 DUSP8Q13202 625 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 GUK1Q16774 197 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 IQCJQ1A5X6 159 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 SIRPB2Q5JXA9 342 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 PRAMEF17Q5VTA0 474 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 SBSNQ6UWP8 590 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 PRSS57Q6UWY2 283 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 Q6ZRG5 221 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 C1orf122Q6ZSJ8 110 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 HFE2Q6ZVN8 426 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 MEX3DQ86XN8 651 aaKnown RBP8.57□□□□□ -1.04
CLIP1-214ENST00000540539 WDFY1Q8IWB7 410 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 CMTM1Q8IZ96 169 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 ACBD7Q8N6N7 88 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 BBS1Q8NFJ9 593 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 OR5K2Q8NHB8 316 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 DCUN1D4Q92564 292 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 IL23AQ9NPF7 189 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 RNF150Q9ULK6 438 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 MRPL42Q9Y6G3 142 aaKnown RBP8.57□□□□□ -1.04
CLIP1-214ENST00000540539 KIAA1671Q9BY89 1806 aa8.56□□□□□ -1.04
CLIP1-214ENST00000540539 PTGESO14684 152 aa8.56□□□□□ -1.04
CLIP1-214ENST00000540539 FFAR2O15552 330 aa8.56□□□□□ -1.04
CLIP1-214ENST00000540539 TRBC1P01850 177 aa8.56□□□□□ -1.04
CLIP1-214ENST00000540539 ACVR1BP36896 505 aa8.56□□□□□ -1.04
CLIP1-214ENST00000540539 ALDH3B1P43353 468 aa8.56□□□□□ -1.04
CLIP1-214ENST00000540539 RGS8P57771 180 aaPredicted RBP8.56□□□□□ -1.04
CLIP1-214ENST00000540539 TAS2R38P59533 333 aa8.56□□□□□ -1.04
CLIP1-214ENST00000540539 DHRS2Q13268 280 aa8.56□□□□□ -1.04
CLIP1-214ENST00000540539 ZBTB6Q15916 424 aa8.56□□□□□ -1.04
CLIP1-214ENST00000540539 SYPL1Q16563 259 aa8.56□□□□□ -1.04
CLIP1-214ENST00000540539 STPG1Q5TH74 334 aa8.56□□□□□ -1.04
CLIP1-214ENST00000540539 NIPAL3Q6P499 406 aa8.56□□□□□ -1.04
CLIP1-214ENST00000540539 PODNL1Q6PEZ8 512 aa8.56□□□□□ -1.04
CLIP1-214ENST00000540539 SYT12Q8IV01 421 aa8.56□□□□□ -1.04
CLIP1-214ENST00000540539 ARRDC2Q8TBH0 407 aa8.56□□□□□ -1.04
CLIP1-214ENST00000540539 TBX5Q99593 518 aa8.56□□□□□ -1.04
CLIP1-214ENST00000540539 SLC2A4RGQ9NR83 387 aa8.56□□□□□ -1.04
CLIP1-214ENST00000540539 AURKAIP1Q9NWT8 199 aaPredicted RBP8.56□□□□□ -1.04
CLIP1-214ENST00000540539 USP36Q9P275 1121 aaKnown RBP8.56□□□□□ -1.04
CLIP1-214ENST00000540539 FBXW11Q9UKB1 542 aa8.56□□□□□ -1.04
CLIP1-214ENST00000540539 OR52A1Q9UKL2 312 aa8.56□□□□□ -1.04
CLIP1-214ENST00000540539 SLC7A11Q9UPY5 501 aa8.56□□□□□ -1.04
CLIP1-214ENST00000540539 NOP16Q9Y3C1 178 aaKnown RBP8.56□□□□□ -1.04
CLIP1-214ENST00000540539 CSAG2Q9Y5P2 127 aa8.56□□□□□ -1.04
CLIP1-214ENST00000540539 SCN1AP35498 2009 aa8.56□□□□□ -1.04
CLIP1-214ENST00000540539 ZNF106Q9H2Y7 1883 aaKnown RBP8.56□□□□□ -1.04
CLIP1-214ENST00000540539 ELOA3DA6NLF2 546 aaPredicted RBP8.56□□□□□ -1.04
CLIP1-214ENST00000540539 NPC1O15118 1278 aa8.56□□□□□ -1.04
CLIP1-214ENST00000540539 NDUFB8O95169 186 aa8.56□□□□□ -1.04
CLIP1-214ENST00000540539 CNOT4O95628 575 aaKnown RBP8.56□□□□□ -1.04
CLIP1-214ENST00000540539 DCNP07585 359 aaKnown RBP8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms