RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 TMEM200CA6NKL6 621 aa15.14■□□□□ 0.01
USP28-208ENST00000540438 PEX14O75381 377 aa15.14■□□□□ 0.01
USP28-208ENST00000540438 HIST2H2ABQ8IUE6 130 aaPredicted RBP15.14■□□□□ 0.01
USP28-208ENST00000540438 ZNF679Q8IYX0 411 aa15.14■□□□□ 0.01
USP28-208ENST00000540438 CADM4Q8NFZ8 388 aa15.14■□□□□ 0.01
USP28-208ENST00000540438 MRPL48Q96GC5 212 aaKnown RBP15.14■□□□□ 0.01
USP28-208ENST00000540438 SLA2Q9H6Q3 261 aa15.14■□□□□ 0.01
USP28-208ENST00000540438 DLL4Q9NR61 685 aa15.14■□□□□ 0.01
USP28-208ENST00000540438 FBXO4Q9UKT5 387 aa15.14■□□□□ 0.01
USP28-208ENST00000540438 MRPS17Q9Y2R5 130 aaKnown RBP15.14■□□□□ 0.01
USP28-208ENST00000540438 C5orf63A6NC05 138 aa15.13■□□□□ 0.01
USP28-208ENST00000540438 CTAG2O75638 210 aa15.13■□□□□ 0.01
USP28-208ENST00000540438 POU3F2P20265 443 aaPredicted RBP15.13■□□□□ 0.01
USP28-208ENST00000540438 SLC6A8P48029 635 aa15.13■□□□□ 0.01
USP28-208ENST00000540438 DNASE1L1P49184 302 aa15.13■□□□□ 0.01
USP28-208ENST00000540438 PNLIPRP2P54317 469 aa15.13■□□□□ 0.01
USP28-208ENST00000540438 IL10RAQ13651 578 aa15.13■□□□□ 0.01
USP28-208ENST00000540438 SFRP5Q5T4F7 317 aa15.13■□□□□ 0.01
USP28-208ENST00000540438 PLXDC2Q6UX71 529 aa15.13■□□□□ 0.01
USP28-208ENST00000540438 OR5D18Q8NGL1 313 aa15.13■□□□□ 0.01
USP28-208ENST00000540438 ZNF519Q8TB69 540 aa15.13■□□□□ 0.01
USP28-208ENST00000540438 ASB5Q8WWX0 329 aa15.13■□□□□ 0.01
USP28-208ENST00000540438 MIB2Q96AX9 1013 aa15.13■□□□□ 0.01
USP28-208ENST00000540438 CCDC74BQ96LY2 380 aa15.13■□□□□ 0.01
USP28-208ENST00000540438 GNRHR2Q96P88 292 aa15.13■□□□□ 0.01
USP28-208ENST00000540438 EXOSC3Q9NQT5 275 aaKnown RBP15.13■□□□□ 0.01
USP28-208ENST00000540438 PPP4R1LQ9P1A2 415 aa15.13■□□□□ 0.01
USP28-208ENST00000540438 SIT1Q9Y3P8 196 aa15.13■□□□□ 0.01
USP28-208ENST00000540438 GABARAPH6UMI1 98 aa15.13■□□□□ 0.01
USP28-208ENST00000540438 VSIG10L2P0DP72 767 aa15.13■□□□□ 0.01
USP28-208ENST00000540438 RIDAP52758 137 aaKnown RBP15.13■□□□□ 0.01
USP28-208ENST00000540438 GLO1Q04760 184 aa15.13■□□□□ 0.01
USP28-208ENST00000540438 CHST4Q8NCG5 386 aa15.13■□□□□ 0.01
USP28-208ENST00000540438 ZCCHC4Q9H5U6 513 aa15.13■□□□□ 0.01
USP28-208ENST00000540438 STEAP1Q9UHE8 339 aa15.13■□□□□ 0.01
USP28-208ENST00000540438 NUP210LQ5VU65 1888 aa15.12■□□□□ 0.01
USP28-208ENST00000540438 TMEM272A0A1B0GTI8 110 aa15.12■□□□□ 0.01
USP28-208ENST00000540438 LOC107986453A0A1B0GWG9 222 aa15.12■□□□□ 0.01
USP28-208ENST00000540438 MPC2O95563 127 aa15.12■□□□□ 0.01
USP28-208ENST00000540438 BTG1P62324 171 aa15.12■□□□□ 0.01
USP28-208ENST00000540438 NDUFA5Q16718 116 aa15.12■□□□□ 0.01
USP28-208ENST00000540438 TMEM176BQ3YBM2 270 aaPredicted RBP15.12■□□□□ 0.01
USP28-208ENST00000540438 LRRC37A5PQ49AS3 106 aa15.12■□□□□ 0.01
USP28-208ENST00000540438 NAA40Q86UY6 237 aa15.12■□□□□ 0.01
USP28-208ENST00000540438 GVQW1Q8N7I0 195 aa15.12■□□□□ 0.01
USP28-208ENST00000540438 HYLS1Q96M11 299 aa15.12■□□□□ 0.01
USP28-208ENST00000540438 TINAGL1Q9GZM7 467 aaPredicted RBP15.12■□□□□ 0.01
USP28-208ENST00000540438 DMXL1Q9Y485 3027 aa15.12■□□□□ 0.01
USP28-208ENST00000540438 TRBV5-5A0A0J9YX44 114 aa15.12■□□□□ 0.01
USP28-208ENST00000540438 IGHV5-10-1A0A0J9YXX1 117 aa15.12■□□□□ 0.01
USP28-208ENST00000540438 C7orf66A4D0T2 115 aa15.12■□□□□ 0.01
USP28-208ENST00000540438 K7ESF4 209 aa15.12■□□□□ 0.01
USP28-208ENST00000540438 ADAM10O14672 748 aa15.12■□□□□ 0.01
USP28-208ENST00000540438 KCNAB3O43448 404 aa15.12■□□□□ 0.01
USP28-208ENST00000540438 RBBP9O75884 186 aa15.12■□□□□ 0.01
USP28-208ENST00000540438 MYBPHQ13203 477 aa15.12■□□□□ 0.01
USP28-208ENST00000540438 HLA-BQ31612 363 aa15.12■□□□□ 0.01
USP28-208ENST00000540438 GPR139Q6DWJ6 353 aa15.12■□□□□ 0.01
USP28-208ENST00000540438 TMEM225Q6GV28 225 aa15.12■□□□□ 0.01
USP28-208ENST00000540438 OR52W1Q6IF63 320 aa15.12■□□□□ 0.01
USP28-208ENST00000540438 DNAJC13O75165 2243 aa15.12■□□□□ 0.01
USP28-208ENST00000540438 DCHS1Q96JQ0 3298 aa15.12■□□□□ 0.01
USP28-208ENST00000540438 TMEM212A6NML5 194 aa15.11■□□□□ 0.01
USP28-208ENST00000540438 NPIPB7O75200 414 aa15.11■□□□□ 0.01
USP28-208ENST00000540438 ZNF254O75437 659 aa15.11■□□□□ 0.01
USP28-208ENST00000540438 SLC26A5P58743 744 aa15.11■□□□□ 0.01
USP28-208ENST00000540438 HSF1Q00613 529 aa15.11■□□□□ 0.01
USP28-208ENST00000540438 NUP54Q7Z3B4 507 aa15.11■□□□□ 0.01
USP28-208ENST00000540438 SPEM1Q8N4L4 309 aa15.11■□□□□ 0.01
USP28-208ENST00000540438 OR4D6Q8NGJ1 314 aa15.11■□□□□ 0.01
USP28-208ENST00000540438 OR13C9Q8NGT0 318 aa15.11■□□□□ 0.01
USP28-208ENST00000540438 STK35Q8TDR2 534 aa15.11■□□□□ 0.01
USP28-208ENST00000540438 A0A1W2PP11 408 aa15.11■□□□□ 0.01
USP28-208ENST00000540438 A0A1W2PQ72 361 aa15.11■□□□□ 0.01
USP28-208ENST00000540438 DXOO77932 396 aaKnown RBP15.11■□□□□ 0.01
USP28-208ENST00000540438 TXNDC12O95881 172 aa15.11■□□□□ 0.01
USP28-208ENST00000540438 ABOP16442 354 aa15.11■□□□□ 0.01
USP28-208ENST00000540438 PSMA6P60900 246 aaKnown RBP15.11■□□□□ 0.01
USP28-208ENST00000540438 HSF2Q03933 536 aa15.11■□□□□ 0.01
USP28-208ENST00000540438 TNK1Q13470 666 aa15.11■□□□□ 0.01
USP28-208ENST00000540438 RAB11BQ15907 218 aa15.11■□□□□ 0.01
USP28-208ENST00000540438 DCAF12L2Q5VW00 463 aa15.11■□□□□ 0.01
USP28-208ENST00000540438 GAREM1Q9H706 876 aa15.11■□□□□ 0.01
USP28-208ENST00000540438 NIPAL2Q9H841 368 aa15.11■□□□□ 0.01
USP28-208ENST00000540438 SLC5A6Q9Y289 635 aa15.11■□□□□ 0.01
USP28-208ENST00000540438 GGT3PA6NGU5 568 aa15.11■□□□□ 0.01
USP28-208ENST00000540438 RER1O15258 196 aa15.11■□□□□ 0.01
USP28-208ENST00000540438 GLSO94925 669 aaPredicted RBP15.11■□□□□ 0.01
USP28-208ENST00000540438 H2BFMP0C1H6 154 aa15.11■□□□□ 0.01
USP28-208ENST00000540438 RPS18P62269 152 aaKnown RBP15.11■□□□□ 0.01
USP28-208ENST00000540438 SLC22A10Q63ZE4 541 aa15.11■□□□□ 0.01
USP28-208ENST00000540438 C11orf40Q8WZ69 217 aa15.11■□□□□ 0.01
USP28-208ENST00000540438 FAM71F1Q96KD3 344 aaPredicted RBP15.11■□□□□ 0.01
USP28-208ENST00000540438 ZNF436Q9C0F3 470 aaPredicted RBP15.11■□□□□ 0.01
USP28-208ENST00000540438 RARRES3Q9UL19 164 aa15.11■□□□□ 0.01
USP28-208ENST00000540438 BLACEA4D250 179 aa15.1■□□□□ 0.01
USP28-208ENST00000540438 PMS2P1A4D2B8 440 aa15.1■□□□□ 0.01
USP28-208ENST00000540438 EIF4E2O60573 245 aaKnown RBP15.1■□□□□ 0.01
USP28-208ENST00000540438 ATXN7L3Q14CW9 347 aaPredicted RBP15.1■□□□□ 0.01
USP28-208ENST00000540438 C4orf46Q504U0 113 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms