RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 ENTPD1P49961 510 aa16.58■□□□□ 0.24
TNFRSF1A-213ENST00000540022 SH3BGRP55822 239 aaPredicted RBP16.58■□□□□ 0.24
TNFRSF1A-213ENST00000540022 LSM6P62312 80 aaKnown RBP16.58■□□□□ 0.24
TNFRSF1A-213ENST00000540022 P2RY6Q15077 328 aa16.58■□□□□ 0.24
TNFRSF1A-213ENST00000540022 PCK2Q16822 640 aa16.58■□□□□ 0.24
TNFRSF1A-213ENST00000540022 NRN1LQ496H8 165 aa16.58■□□□□ 0.24
TNFRSF1A-213ENST00000540022 TEX30Q5JUR7 227 aa16.58■□□□□ 0.24
TNFRSF1A-213ENST00000540022 MTFR2Q6P444 385 aa16.58■□□□□ 0.24
TNFRSF1A-213ENST00000540022 DPY19L4Q7Z388 723 aa16.58■□□□□ 0.24
TNFRSF1A-213ENST00000540022 IPCEF1Q8WWN9 437 aaPredicted RBP16.58■□□□□ 0.24
TNFRSF1A-213ENST00000540022 SH3GL3Q99963 347 aa16.58■□□□□ 0.24
TNFRSF1A-213ENST00000540022 ZNF416Q9BWM5 594 aa16.58■□□□□ 0.24
TNFRSF1A-213ENST00000540022 ERVK-18Q9QC07 812 aa16.58■□□□□ 0.24
TNFRSF1A-213ENST00000540022 CRYBG3Q68DQ2 2970 aa16.58■□□□□ 0.24
TNFRSF1A-213ENST00000540022 A1L4Q6 167 aa16.57■□□□□ 0.24
TNFRSF1A-213ENST00000540022 RAD51DO75771 328 aa16.57■□□□□ 0.24
TNFRSF1A-213ENST00000540022 TNFAIP8O95379 198 aa16.57■□□□□ 0.24
TNFRSF1A-213ENST00000540022 FADS2O95864 444 aaKnown RBP16.57■□□□□ 0.24
TNFRSF1A-213ENST00000540022 SPARCP09486 303 aa16.57■□□□□ 0.24
TNFRSF1A-213ENST00000540022 OR8G3PP0DMU2 310 aa16.57■□□□□ 0.24
TNFRSF1A-213ENST00000540022 C21orf33P30042 268 aaPredicted RBP16.57■□□□□ 0.24
TNFRSF1A-213ENST00000540022 TGFBR3Q03167 851 aa16.57■□□□□ 0.24
TNFRSF1A-213ENST00000540022 GABRA6Q16445 453 aa16.57■□□□□ 0.24
TNFRSF1A-213ENST00000540022 KCTD21Q4G0X4 260 aa16.57■□□□□ 0.24
TNFRSF1A-213ENST00000540022 SFRP5Q5T4F7 317 aa16.57■□□□□ 0.24
TNFRSF1A-213ENST00000540022 HIST2H2BCQ6DN03 193 aa16.57■□□□□ 0.24
TNFRSF1A-213ENST00000540022 ANKRD16Q6P6B7 361 aa16.57■□□□□ 0.24
TNFRSF1A-213ENST00000540022 CDC20BQ86Y33 519 aa16.57■□□□□ 0.24
TNFRSF1A-213ENST00000540022 SKA3Q8IX90 412 aa16.57■□□□□ 0.24
TNFRSF1A-213ENST00000540022 SLC35F2Q8IXU6 374 aa16.57■□□□□ 0.24
TNFRSF1A-213ENST00000540022 ASB5Q8WWX0 329 aa16.57■□□□□ 0.24
TNFRSF1A-213ENST00000540022 BCL2L2Q92843 193 aaPredicted RBP16.57■□□□□ 0.24
TNFRSF1A-213ENST00000540022 SIGLEC11Q96RL6 698 aa16.57■□□□□ 0.24
TNFRSF1A-213ENST00000540022 TBX5Q99593 518 aa16.57■□□□□ 0.24
TNFRSF1A-213ENST00000540022 YIPF3Q9GZM5 350 aa16.57■□□□□ 0.24
TNFRSF1A-213ENST00000540022 KCNG2Q9UJ96 466 aa16.57■□□□□ 0.24
TNFRSF1A-213ENST00000540022 COPS3Q9UNS2 423 aa16.57■□□□□ 0.24
TNFRSF1A-213ENST00000540022 CIB4A0PJX0 185 aa16.56■□□□□ 0.24
TNFRSF1A-213ENST00000540022 TRIM64A6NGJ6 449 aa16.56■□□□□ 0.24
TNFRSF1A-213ENST00000540022 C12orf71A8MTZ7 269 aa16.56■□□□□ 0.24
TNFRSF1A-213ENST00000540022 CDK1P06493 297 aa16.56■□□□□ 0.24
TNFRSF1A-213ENST00000540022 HTR1AP08908 422 aa16.56■□□□□ 0.24
TNFRSF1A-213ENST00000540022 EEF1B2P24534 225 aaKnown RBP16.56■□□□□ 0.24
TNFRSF1A-213ENST00000540022 CDH15P55291 814 aa16.56■□□□□ 0.24
TNFRSF1A-213ENST00000540022 GABARAPL2P60520 117 aa16.56■□□□□ 0.24
TNFRSF1A-213ENST00000540022 HIKESHIQ53FT3 197 aa16.56■□□□□ 0.24
TNFRSF1A-213ENST00000540022 CORO6Q6QEF8 472 aa16.56■□□□□ 0.24
TNFRSF1A-213ENST00000540022 STAC2Q6ZMT1 411 aa16.56■□□□□ 0.24
TNFRSF1A-213ENST00000540022 LINC00346Q8IVM7 164 aa16.56■□□□□ 0.24
TNFRSF1A-213ENST00000540022 STX19Q8N4C7 294 aa16.56■□□□□ 0.24
TNFRSF1A-213ENST00000540022 RFLNBQ8N5W9 214 aa16.56■□□□□ 0.24
TNFRSF1A-213ENST00000540022 OR10H4Q8NGA5 316 aa16.56■□□□□ 0.24
TNFRSF1A-213ENST00000540022 LILRB4Q8NHJ6 448 aa16.56■□□□□ 0.24
TNFRSF1A-213ENST00000540022 OTOSQ8NHW6 89 aa16.56■□□□□ 0.24
TNFRSF1A-213ENST00000540022 FGFBP3Q8TAT2 258 aa16.56■□□□□ 0.24
TNFRSF1A-213ENST00000540022 MYDGFQ969H8 173 aa16.56■□□□□ 0.24
TNFRSF1A-213ENST00000540022 FBXO17Q96EF6 278 aa16.56■□□□□ 0.24
TNFRSF1A-213ENST00000540022 TMEM80Q96HE8 168 aa16.56■□□□□ 0.24
TNFRSF1A-213ENST00000540022 ZNF224Q9NZL3 707 aa16.56■□□□□ 0.24
TNFRSF1A-213ENST00000540022 ASH2LQ9UBL3 628 aa16.56■□□□□ 0.24
TNFRSF1A-213ENST00000540022 CYB5R1Q9UHQ9 305 aa16.56■□□□□ 0.24
TNFRSF1A-213ENST00000540022 DIMT1Q9UNQ2 313 aaKnown RBP16.56■□□□□ 0.24
TNFRSF1A-213ENST00000540022 POLR1DQ9Y2S0 133 aa16.56■□□□□ 0.24
TNFRSF1A-213ENST00000540022 KLHDC2Q9Y2U9 406 aa16.56■□□□□ 0.24
TNFRSF1A-213ENST00000540022 LHFPL6Q9Y693 200 aa16.56■□□□□ 0.24
TNFRSF1A-213ENST00000540022 FREM1Q5H8C1 2179 aa16.56■□□□□ 0.24
TNFRSF1A-213ENST00000540022 IRGMA1A4Y4 181 aa16.55■□□□□ 0.24
TNFRSF1A-213ENST00000540022 FARS2O95363 451 aaKnown RBP16.55■□□□□ 0.24
TNFRSF1A-213ENST00000540022 RAB36O95755 333 aa16.55■□□□□ 0.24
TNFRSF1A-213ENST00000540022 CLDN1O95832 211 aa16.55■□□□□ 0.24
TNFRSF1A-213ENST00000540022 IGHA1P01876 353 aa16.55■□□□□ 0.24
TNFRSF1A-213ENST00000540022 LYNP07948 512 aa16.55■□□□□ 0.24
TNFRSF1A-213ENST00000540022 DCKP27707 260 aa16.55■□□□□ 0.24
TNFRSF1A-213ENST00000540022 FAM27E3Q08E93 113 aa16.55■□□□□ 0.24
TNFRSF1A-213ENST00000540022 SLC25A35Q3KQZ1 300 aa16.55■□□□□ 0.24
TNFRSF1A-213ENST00000540022 TBRG1Q3YBR2 411 aa16.55■□□□□ 0.24
TNFRSF1A-213ENST00000540022 CDADC1Q9BWV3 514 aa16.55■□□□□ 0.24
TNFRSF1A-213ENST00000540022 ZNF696Q9H7X3 374 aa16.55■□□□□ 0.24
TNFRSF1A-213ENST00000540022 PCDHGB1Q9Y5G3 927 aa16.55■□□□□ 0.24
TNFRSF1A-213ENST00000540022 CACNA1CQ13936 2221 aa16.55■□□□□ 0.24
TNFRSF1A-213ENST00000540022 CENPEQ02224 2701 aa16.55■□□□□ 0.24
TNFRSF1A-213ENST00000540022 A0A1W2PQL4 384 aaPredicted RBP16.55■□□□□ 0.24
TNFRSF1A-213ENST00000540022 FAM90A27PA6NNH2 459 aa16.55■□□□□ 0.24
TNFRSF1A-213ENST00000540022 RGS10O43665 173 aa16.55■□□□□ 0.24
TNFRSF1A-213ENST00000540022 RPSAP08865 295 aaKnown RBP16.55■□□□□ 0.24
TNFRSF1A-213ENST00000540022 CST2P09228 141 aa16.55■□□□□ 0.24
TNFRSF1A-213ENST00000540022 OR2T7P0C7T2 308 aa16.55■□□□□ 0.24
TNFRSF1A-213ENST00000540022 PATE4P0C8F1 98 aa16.55■□□□□ 0.24
TNFRSF1A-213ENST00000540022 ALOX5APP20292 161 aa16.55■□□□□ 0.24
TNFRSF1A-213ENST00000540022 PSMB1P20618 241 aaKnown RBP16.55■□□□□ 0.24
TNFRSF1A-213ENST00000540022 SLC18B1Q6NT16 456 aa16.55■□□□□ 0.24
TNFRSF1A-213ENST00000540022 BHLHA15Q7RTS1 189 aaPredicted RBP16.55■□□□□ 0.24
TNFRSF1A-213ENST00000540022 SSX6Q7RTT6 188 aa16.55■□□□□ 0.24
TNFRSF1A-213ENST00000540022 SLC16A14Q7RTX9 510 aa16.55■□□□□ 0.24
TNFRSF1A-213ENST00000540022 ACBD7Q8N6N7 88 aa16.55■□□□□ 0.24
TNFRSF1A-213ENST00000540022 C1orf162Q8NEQ5 155 aaPredicted RBP16.55■□□□□ 0.24
TNFRSF1A-213ENST00000540022 OR2T27Q8NH04 317 aa16.55■□□□□ 0.24
TNFRSF1A-213ENST00000540022 ITLN2Q8WWU7 325 aaPredicted RBP16.55■□□□□ 0.24
TNFRSF1A-213ENST00000540022 BOD1Q96IK1 185 aa16.55■□□□□ 0.24
TNFRSF1A-213ENST00000540022 AMELYQ99218 206 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms