RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-208	ENST00000536710	AIRE	O43918	545 aa		3.55	□□□□□ -1.84
PRKDC-208	ENST00000536710	GABARAP	O95166	117 aa		3.55	□□□□□ -1.84
PRKDC-208	ENST00000536710	PRPS2	P11908	318 aa		3.55	□□□□□ -1.84
PRKDC-208	ENST00000536710	F2R	P25116	425 aa		3.55	□□□□□ -1.84
PRKDC-208	ENST00000536710	GPX4	P36969	197 aa	Predicted RBP	3.55	□□□□□ -1.84
PRKDC-208	ENST00000536710	RPS5	P46782	204 aa	Known RBP	3.55	□□□□□ -1.84
PRKDC-208	ENST00000536710	RND2	P52198	227 aa		3.55	□□□□□ -1.84
PRKDC-208	ENST00000536710	SP4	Q02446	784 aa		3.55	□□□□□ -1.84
PRKDC-208	ENST00000536710	MAB21L1	Q13394	359 aa		3.55	□□□□□ -1.84
PRKDC-208	ENST00000536710	GINS1	Q14691	196 aa		3.55	□□□□□ -1.84
PRKDC-208	ENST00000536710	WDR43	Q15061	677 aa	Known RBP eCLIP	3.55	□□□□□ -1.84
PRKDC-208	ENST00000536710	POU2AF1	Q16633	256 aa		3.55	□□□□□ -1.84
PRKDC-208	ENST00000536710	TMEM255A	Q5JRV8	349 aa		3.55	□□□□□ -1.84
PRKDC-208	ENST00000536710	LYPD2	Q6UXB3	125 aa		3.55	□□□□□ -1.84
PRKDC-208	ENST00000536710	ANGPTL8	Q6UXH0	198 aa		3.55	□□□□□ -1.84
PRKDC-208	ENST00000536710	OR9G4	Q8NGQ1	327 aa		3.55	□□□□□ -1.84
PRKDC-208	ENST00000536710	BMF	Q96LC9	184 aa		3.55	□□□□□ -1.84
PRKDC-208	ENST00000536710	SLC25A2	Q9BXI2	301 aa		3.55	□□□□□ -1.84
PRKDC-208	ENST00000536710	SLC25A39	Q9BZJ4	359 aa	Predicted RBP	3.55	□□□□□ -1.84
PRKDC-208	ENST00000536710	PLA2G2F	Q9BZM2	168 aa		3.55	□□□□□ -1.84
PRKDC-208	ENST00000536710	UCK2	Q9BZX2	261 aa		3.55	□□□□□ -1.84
PRKDC-208	ENST00000536710	AGPAT4	Q9NRZ5	378 aa		3.55	□□□□□ -1.84
PRKDC-208	ENST00000536710	UVRAG	Q9P2Y5	699 aa		3.55	□□□□□ -1.84
PRKDC-208	ENST00000536710	CLN8	Q9UBY8	286 aa		3.55	□□□□□ -1.84
PRKDC-208	ENST00000536710	TRMT112	Q9UI30	125 aa	Known RBP	3.55	□□□□□ -1.84
PRKDC-208	ENST00000536710	PSME2	Q9UL46	239 aa		3.55	□□□□□ -1.84
PRKDC-208	ENST00000536710	RDH16	O75452	317 aa		3.54	□□□□□ -1.84
PRKDC-208	ENST00000536710	ARG1	P05089	322 aa		3.54	□□□□□ -1.84
PRKDC-208	ENST00000536710	SERPINE2	P07093	398 aa		3.54	□□□□□ -1.84
PRKDC-208	ENST00000536710	OR5H8	P0DN80	308 aa		3.54	□□□□□ -1.84
PRKDC-208	ENST00000536710	RALB	P11234	206 aa		3.54	□□□□□ -1.84
PRKDC-208	ENST00000536710	GGT1	P19440	569 aa		3.54	□□□□□ -1.84
PRKDC-208	ENST00000536710	RAB3B	P20337	219 aa		3.54	□□□□□ -1.84
PRKDC-208	ENST00000536710	CCT6A	P40227	531 aa	Known RBP	3.54	□□□□□ -1.84
PRKDC-208	ENST00000536710	THEM4	Q5T1C6	240 aa		3.54	□□□□□ -1.84
PRKDC-208	ENST00000536710	TTC19	Q6DKK2	380 aa	Predicted RBP	3.54	□□□□□ -1.84
PRKDC-208	ENST00000536710	IGFL2	Q6UWQ7	119 aa		3.54	□□□□□ -1.84
PRKDC-208	ENST00000536710	TIFAB	Q6ZNK6	161 aa		3.54	□□□□□ -1.84
PRKDC-208	ENST00000536710	JAGN1	Q8N5M9	183 aa		3.54	□□□□□ -1.84
PRKDC-208	ENST00000536710	PQLC3	Q8N755	202 aa		3.54	□□□□□ -1.84
PRKDC-208	ENST00000536710	OR5K2	Q8NHB8	316 aa		3.54	□□□□□ -1.84
PRKDC-208	ENST00000536710	MARCH1	Q8TCQ1	289 aa		3.54	□□□□□ -1.84
PRKDC-208	ENST00000536710	ZFP90	Q8TF47	636 aa		3.54	□□□□□ -1.84
PRKDC-208	ENST00000536710	PEX13	Q92968	403 aa		3.54	□□□□□ -1.84
PRKDC-208	ENST00000536710	CREB3L1	Q96BA8	519 aa		3.54	□□□□□ -1.84
PRKDC-208	ENST00000536710	SLC7A5P2	Q9GIP4	190 aa		3.54	□□□□□ -1.84
PRKDC-208	ENST00000536710	IFI27L2	Q9H2X8	130 aa		3.54	□□□□□ -1.84
PRKDC-208	ENST00000536710	TMEM9B	Q9NQ34	198 aa		3.54	□□□□□ -1.84
PRKDC-208	ENST00000536710	PHLPP2	Q6ZVD8	1323 aa		3.53	□□□□□ -1.84
PRKDC-208	ENST00000536710	TRAV25	A0A0B4J276	109 aa		3.53	□□□□□ -1.84
PRKDC-208	ENST00000536710	INS-IGF2	F8WCM5	200 aa		3.53	□□□□□ -1.84
PRKDC-208	ENST00000536710	SMKR1	H3BMG3	65 aa		3.53	□□□□□ -1.84
PRKDC-208	ENST00000536710		H7C0C1	242 aa		3.53	□□□□□ -1.84
PRKDC-208	ENST00000536710		M0R3G1	203 aa		3.53	□□□□□ -1.84
PRKDC-208	ENST00000536710	SCAMP2	O15127	329 aa	Known RBP	3.53	□□□□□ -1.84
PRKDC-208	ENST00000536710	CASC3	O15234	703 aa	Known RBP	3.53	□□□□□ -1.84
PRKDC-208	ENST00000536710	OMG	P23515	440 aa		3.53	□□□□□ -1.84
PRKDC-208	ENST00000536710	OR1E1	P30953	314 aa		3.53	□□□□□ -1.84
PRKDC-208	ENST00000536710	CEACAM3	P40198	252 aa		3.53	□□□□□ -1.84
PRKDC-208	ENST00000536710	MAGEA1	P43355	309 aa		3.53	□□□□□ -1.84
PRKDC-208	ENST00000536710	ITIH4	Q14624	930 aa		3.53	□□□□□ -1.84
PRKDC-208	ENST00000536710	ZNF726P1	Q15940	193 aa		3.53	□□□□□ -1.84
PRKDC-208	ENST00000536710	OR52W1	Q6IF63	320 aa		3.53	□□□□□ -1.84
PRKDC-208	ENST00000536710	DNAJC24	Q6P3W2	148 aa		3.53	□□□□□ -1.84
PRKDC-208	ENST00000536710	SPESP1	Q6UW49	350 aa		3.53	□□□□□ -1.84
PRKDC-208	ENST00000536710	C12orf54	Q6X4T0	127 aa		3.53	□□□□□ -1.84
PRKDC-208	ENST00000536710	PCP2	Q8IVA1	136 aa		3.53	□□□□□ -1.84
PRKDC-208	ENST00000536710	OR10J6P	Q8NGY7	276 aa		3.53	□□□□□ -1.84
PRKDC-208	ENST00000536710	LRRC29	Q8WV35	223 aa		3.53	□□□□□ -1.84
PRKDC-208	ENST00000536710	EXOSC8	Q96B26	276 aa	Known RBP	3.53	□□□□□ -1.84
PRKDC-208	ENST00000536710	CYYR1	Q96J86	154 aa		3.53	□□□□□ -1.84
PRKDC-208	ENST00000536710	WFIKKN1	Q96NZ8	548 aa		3.53	□□□□□ -1.84
PRKDC-208	ENST00000536710	ZYG11B	Q9C0D3	744 aa		3.53	□□□□□ -1.84
PRKDC-208	ENST00000536710	LINC00597	Q9H2U6	94 aa		3.53	□□□□□ -1.84
PRKDC-208	ENST00000536710	CRLF2	Q9HC73	371 aa		3.53	□□□□□ -1.84
PRKDC-208	ENST00000536710	RPRD1B	Q9NQG5	326 aa	Known RBP	3.53	□□□□□ -1.84
PRKDC-208	ENST00000536710	PXMP2	Q9NR77	195 aa		3.53	□□□□□ -1.84
PRKDC-208	ENST00000536710	FAM49B	Q9NUQ9	324 aa		3.53	□□□□□ -1.84
PRKDC-208	ENST00000536710	AHSP	Q9NZD4	102 aa		3.53	□□□□□ -1.84
PRKDC-208	ENST00000536710	UBN2	Q6ZU65	1347 aa		3.52	□□□□□ -1.85
PRKDC-208	ENST00000536710	TDRD6	O60522	2096 aa	Known RBP	3.52	□□□□□ -1.85
PRKDC-208	ENST00000536710		H0YHG0	523 aa		3.52	□□□□□ -1.85
PRKDC-208	ENST00000536710	LSM8	O95777	96 aa	Known RBP	3.52	□□□□□ -1.85
PRKDC-208	ENST00000536710	RET	P07949	1114 aa		3.52	□□□□□ -1.85
PRKDC-208	ENST00000536710	POLR2M	P0CAP2	368 aa		3.52	□□□□□ -1.85
PRKDC-208	ENST00000536710	UBC	P0CG48	685 aa	Known RBP	3.52	□□□□□ -1.85
PRKDC-208	ENST00000536710	VSX2	P58304	361 aa	Predicted RBP	3.52	□□□□□ -1.85
PRKDC-208	ENST00000536710	HERVK_113	P61574	105 aa		3.52	□□□□□ -1.85
PRKDC-208	ENST00000536710	PGGHG	Q32M88	737 aa		3.52	□□□□□ -1.85
PRKDC-208	ENST00000536710	TSPO2	Q5TGU0	170 aa		3.52	□□□□□ -1.85
PRKDC-208	ENST00000536710	MRPL55	Q7Z7F7	128 aa	Known RBP	3.52	□□□□□ -1.85
PRKDC-208	ENST00000536710	PRSS58	Q8IYP2	241 aa		3.52	□□□□□ -1.85
PRKDC-208	ENST00000536710	ZNF786	Q8N393	782 aa		3.52	□□□□□ -1.85
PRKDC-208	ENST00000536710	OR10G4	Q8NGN3	311 aa		3.52	□□□□□ -1.85
PRKDC-208	ENST00000536710	APH1B	Q8WW43	257 aa		3.52	□□□□□ -1.85
PRKDC-208	ENST00000536710	TMEM230	Q96A57	120 aa		3.52	□□□□□ -1.85
PRKDC-208	ENST00000536710	LYRM4	Q9HD34	91 aa		3.52	□□□□□ -1.85
PRKDC-208	ENST00000536710	MRPS30	Q9NP92	439 aa	Known RBP	3.52	□□□□□ -1.85
PRKDC-208	ENST00000536710	ISYNA1	Q9NPH2	558 aa		3.52	□□□□□ -1.85
PRKDC-208	ENST00000536710	CHRAC1	Q9NRG0	131 aa		3.52	□□□□□ -1.85

Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms