RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 DCKP27707 260 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 OTX1P32242 354 aaPredicted RBP1.72□□□□□ -2.13
CD44-238ENST00000534296 CEACAM3P40198 252 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 NSG1P42857 185 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 CSNK1A1P48729 337 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 NCBP2P52298 156 aaKnown RBP eCLIP1.72□□□□□ -2.13
CD44-238ENST00000534296 PRMT2P55345 433 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 CUL2Q13617 745 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 FBXW9Q5XUX1 488 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 REEP3Q6NUK4 255 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 PP632Q6XCG6 107 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 CERS6Q6ZMG9 384 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 ZFP2Q6ZN57 461 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 MBOAT1Q6ZNC8 495 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 FAM92BQ6ZTR7 304 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 SSX9Q7RTT3 188 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 SAXO1Q8IYX7 474 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 IQCKQ8N0W5 287 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 PGAM4Q8N0Y7 254 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 CBR4Q8N4T8 237 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 METTL13Q8N6R0 699 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 SNX31Q8N9S9 440 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 OR2A1Q8NGT9 310 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 RAB3IL1Q8TBN0 382 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 ZNF596Q8TC21 504 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 ABHD3Q8WU67 409 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 TMEM230Q96A57 120 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 CLSTN2Q9H4D0 955 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 UGT1A7Q9HAW7 530 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 UGT1A10Q9HAW8 530 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 UGT1A8Q9HAW9 530 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 FGF20Q9NP95 211 aaPredicted RBP1.72□□□□□ -2.13
CD44-238ENST00000534296 CCNB1IP1Q9NPC3 277 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 MRPL22Q9NWU5 206 aaKnown RBP1.72□□□□□ -2.13
CD44-238ENST00000534296 LYARQ9NX58 379 aaKnown RBP1.72□□□□□ -2.13
CD44-238ENST00000534296 CCDC59Q9P031 241 aaKnown RBP1.72□□□□□ -2.13
CD44-238ENST00000534296 GCNT4Q9P109 453 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 LGALS13Q9UHV8 139 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 MRPS18BQ9Y676 258 aaKnown RBP1.72□□□□□ -2.13
CD44-238ENST00000534296 SAR1BQ9Y6B6 198 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 CARMIL3Q8ND23 1372 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 CEMIPQ8WUJ3 1361 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 LTBP1Q14766 1721 aa1.71□□□□□ -2.13
CD44-238ENST00000534296 A0A1W2PQ67 120 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 SYCE1LA8MT33 242 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 CASQ2O14958 399 aaPredicted RBP1.71□□□□□ -2.14
CD44-238ENST00000534296 CD5LO43866 347 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 SRP72O76094 671 aaKnown RBP1.71□□□□□ -2.14
CD44-238ENST00000534296 WISP3O95389 354 aaPredicted RBP1.71□□□□□ -2.14
CD44-238ENST00000534296 ARG1P05089 322 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 CT62P0C5K7 136 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 ERGP11308 486 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 FOLR1P15328 257 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 GGT1P19440 569 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 UQCRFS1P47985 274 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 MRPL19P49406 292 aaKnown RBP1.71□□□□□ -2.14
CD44-238ENST00000534296 P2RX1P51575 399 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 ZNF136P52737 540 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 LINC00315P59091 139 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 RPS15P62841 145 aaKnown RBP1.71□□□□□ -2.14
CD44-238ENST00000534296 BEX3Q00994 111 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 CDH17Q12864 832 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 ART3Q13508 389 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 IL18Q14116 193 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 PON3Q15166 354 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 IRF4Q15306 451 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 RGNQ15493 299 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 OR7A5Q15622 319 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 POU2AF1Q16633 256 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 ORMDL2Q53FV1 153 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 LCE1CQ5T751 118 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 LCE1BQ5T7P3 118 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 ARL9Q6T311 187 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 METAP1DQ6UB28 335 aaPredicted RBP1.71□□□□□ -2.14
CD44-238ENST00000534296 SASS6Q6UVJ0 657 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 ASCL5Q7RTU5 278 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 BIVMQ86UB2 503 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 JAGN1Q8N5M9 183 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 Q8N976 141 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 TTC29Q8NA56 475 aaPredicted RBP1.71□□□□□ -2.14
CD44-238ENST00000534296 HSD17B11Q8NBQ5 300 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 OR5W2Q8NH69 310 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 LRRC29Q8WV35 223 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 APH1BQ8WW43 257 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 ELMO1Q92556 727 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 CAMK2N2Q96S95 79 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 LZTS2Q9BRK4 669 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 NEUROG2Q9H2A3 272 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 TMEM185BQ9H7F4 350 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 SLC40A1Q9NP59 571 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 C20orf96Q9NUD7 363 aaPredicted RBP1.71□□□□□ -2.14
CD44-238ENST00000534296 DDX19AQ9NUU7 478 aaKnown RBP1.71□□□□□ -2.14
CD44-238ENST00000534296 ENOPH1Q9UHY7 261 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 ZNF222Q9UK12 451 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 TMEM14AQ9Y6G1 99 aa1.71□□□□□ -2.14
CD44-238ENST00000534296 ARHGAP21Q5T5U3 1957 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 PLAC8L1A1L4L8 177 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 ANKRD63C9JTQ0 380 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 MRPS12O15235 138 aaKnown RBP1.7□□□□□ -2.14
CD44-238ENST00000534296 RAD51BO15315 384 aa1.7□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms