RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 SPCS2Q15005 226 aa18.56■□□□□ 0.56
VPS28-208ENST00000527797 SF3B4Q15427 424 aaKnown RBP eCLIP18.56■□□□□ 0.566e-8■■■■■ 27
VPS28-208ENST00000527797 LIPNQ5VXI9 398 aa18.56■□□□□ 0.56
VPS28-208ENST00000527797 DMKNQ6E0U4 476 aaPredicted RBP18.56■□□□□ 0.56
VPS28-208ENST00000527797 ZC3HAV1Q7Z2W4 902 aaKnown RBP18.56■□□□□ 0.56
VPS28-208ENST00000527797 Q8NA96 180 aa18.56■□□□□ 0.56
VPS28-208ENST00000527797 ST7LQ8TDW4 575 aa18.56■□□□□ 0.56
VPS28-208ENST00000527797 APH1AQ96BI3 265 aa18.56■□□□□ 0.56
VPS28-208ENST00000527797 GMPPAQ96IJ6 420 aaPredicted RBP18.56■□□□□ 0.56
VPS28-208ENST00000527797 ALKBH3Q96Q83 286 aaPredicted RBP18.56■□□□□ 0.56
VPS28-208ENST00000527797 ELOVL3Q9HB03 270 aa18.56■□□□□ 0.56
VPS28-208ENST00000527797 GPR35Q9HC97 309 aa18.56■□□□□ 0.56
VPS28-208ENST00000527797 ST6GALNAC2Q9UJ37 374 aa18.56■□□□□ 0.56
VPS28-208ENST00000527797 A0A1W2PPW3 197 aa18.55■□□□□ 0.56
VPS28-208ENST00000527797 RPP14O95059 124 aaKnown RBP18.55■□□□□ 0.56
VPS28-208ENST00000527797 PCSK6P29122 969 aa18.55■□□□□ 0.56
VPS28-208ENST00000527797 TGM4P49221 684 aa18.55■□□□□ 0.56
VPS28-208ENST00000527797 NFATC3Q12968 1075 aa18.55■□□□□ 0.56
VPS28-208ENST00000527797 CDK5R1Q15078 307 aa18.55■□□□□ 0.56
VPS28-208ENST00000527797 TSPO2Q5TGU0 170 aa18.55■□□□□ 0.56
VPS28-208ENST00000527797 ZNF324BQ6AW86 544 aaPredicted RBP18.55■□□□□ 0.56
VPS28-208ENST00000527797 CORO6Q6QEF8 472 aa18.55■□□□□ 0.56
VPS28-208ENST00000527797 LRRN1Q6UXK5 716 aa18.55■□□□□ 0.56
VPS28-208ENST00000527797 SPATC1Q76KD6 591 aa18.55■□□□□ 0.56
VPS28-208ENST00000527797 ZNF100Q8IYN0 542 aa18.55■□□□□ 0.56
VPS28-208ENST00000527797 ZNF837Q96EG3 531 aaPredicted RBP18.55■□□□□ 0.56
VPS28-208ENST00000527797 DCUN1D5Q9BTE7 237 aa18.55■□□□□ 0.56
VPS28-208ENST00000527797 CENPOQ9BU64 300 aa18.55■□□□□ 0.56
VPS28-208ENST00000527797 TMED9Q9BVK6 235 aa18.55■□□□□ 0.56
VPS28-208ENST00000527797 C1orf198Q9H425 327 aa18.55■□□□□ 0.56
VPS28-208ENST00000527797 LRRTM2O43300 516 aa18.54■□□□□ 0.56
VPS28-208ENST00000527797 HLA-DPB1P04440 258 aa18.54■□□□□ 0.56
VPS28-208ENST00000527797 NPR2P20594 1047 aa18.54■□□□□ 0.56
VPS28-208ENST00000527797 ROR2Q01974 943 aaKnown RBP18.54■□□□□ 0.56
VPS28-208ENST00000527797 SLC3A1Q07837 685 aa18.54■□□□□ 0.56
VPS28-208ENST00000527797 CEACAM16Q2WEN9 425 aa18.54■□□□□ 0.56
VPS28-208ENST00000527797 ZNF585AQ6P3V2 769 aa18.54■□□□□ 0.56
VPS28-208ENST00000527797 NUFIP2Q7Z417 695 aaKnown RBP18.54■□□□□ 0.56
VPS28-208ENST00000527797 FGD2Q7Z6J4 655 aa18.54■□□□□ 0.56
VPS28-208ENST00000527797 CISD2Q8N5K1 135 aaKnown RBP18.54■□□□□ 0.56
VPS28-208ENST00000527797 HTRA1Q92743 480 aa18.54■□□□□ 0.56
VPS28-208ENST00000527797 WNT2BQ93097 391 aa18.54■□□□□ 0.56
VPS28-208ENST00000527797 NABP1Q96AH0 204 aa18.54■□□□□ 0.56
VPS28-208ENST00000527797 TM9SF2Q99805 663 aa18.54■□□□□ 0.56
VPS28-208ENST00000527797 SLC7A10Q9NS82 523 aa18.54■□□□□ 0.56
VPS28-208ENST00000527797 GDF2Q9UK05 429 aaPredicted RBP18.54■□□□□ 0.56
VPS28-208ENST00000527797 LHFPL6Q9Y693 200 aa18.54■□□□□ 0.56
VPS28-208ENST00000527797 TRBV2A0A0J9YWF9 115 aa18.53■□□□□ 0.56
VPS28-208ENST00000527797 ZNF254O75437 659 aa18.53■□□□□ 0.56
VPS28-208ENST00000527797 CD1AP06126 327 aa18.53■□□□□ 0.56
VPS28-208ENST00000527797 AGTR1P30556 359 aa18.53■□□□□ 0.56
VPS28-208ENST00000527797 RIDAP52758 137 aaKnown RBP18.53■□□□□ 0.56
VPS28-208ENST00000527797 TRAM1Q15629 374 aa18.53■□□□□ 0.56
VPS28-208ENST00000527797 ACSF3Q4G176 576 aaPredicted RBP18.53■□□□□ 0.56
VPS28-208ENST00000527797 SOWAHCQ53LP3 525 aaPredicted RBP18.53■□□□□ 0.56
VPS28-208ENST00000527797 DEGS2Q6QHC5 323 aa18.53■□□□□ 0.56
VPS28-208ENST00000527797 LINGO2Q7L985 606 aa18.53■□□□□ 0.56
VPS28-208ENST00000527797 TEX19Q8NA77 164 aa18.53■□□□□ 0.56
VPS28-208ENST00000527797 NDNFQ8TB73 568 aa18.53■□□□□ 0.56
VPS28-208ENST00000527797 SMIM19Q96E16 107 aa18.53■□□□□ 0.56
VPS28-208ENST00000527797 COQ7Q99807 217 aa18.53■□□□□ 0.56
VPS28-208ENST00000527797 ZNF416Q9BWM5 594 aa18.53■□□□□ 0.56
VPS28-208ENST00000527797 SIAEQ9HAT2 523 aa18.53■□□□□ 0.56
VPS28-208ENST00000527797 TRDV1A0A1B0GX56 115 aa18.52■□□□□ 0.56
VPS28-208ENST00000527797 SS18L1O75177 396 aaPredicted RBP18.52■□□□□ 0.56
VPS28-208ENST00000527797 IGHV3-9P01782 118 aa18.52■□□□□ 0.56
VPS28-208ENST00000527797 TGFBR1P36897 503 aa18.52■□□□□ 0.56
VPS28-208ENST00000527797 FABP5Q01469 135 aa18.52■□□□□ 0.56
VPS28-208ENST00000527797 STK11Q15831 433 aa18.52■□□□□ 0.56
VPS28-208ENST00000527797 FAM27BQ5VT28 67 aa18.52■□□□□ 0.56
VPS28-208ENST00000527797 CD200R1LQ6Q8B3 271 aa18.52■□□□□ 0.56
VPS28-208ENST00000527797 USP43Q70EL4 1123 aa18.52■□□□□ 0.56
VPS28-208ENST00000527797 KBTBD8Q8NFY9 601 aa18.52■□□□□ 0.56
VPS28-208ENST00000527797 RNF133Q8WVZ7 376 aa18.52■□□□□ 0.56
VPS28-208ENST00000527797 GHSRQ92847 366 aa18.52■□□□□ 0.56
VPS28-208ENST00000527797 SLAMF6Q96DU3 332 aa18.52■□□□□ 0.56
VPS28-208ENST00000527797 MAP6Q96JE9 813 aa18.52■□□□□ 0.56
VPS28-208ENST00000527797 FOXB1Q99853 325 aa18.52■□□□□ 0.56
VPS28-208ENST00000527797 CENPMQ9NSP4 180 aa18.52■□□□□ 0.56
VPS28-208ENST00000527797 TMEM38BQ9NVV0 291 aa18.52■□□□□ 0.56
VPS28-208ENST00000527797 ASH2LQ9UBL3 628 aa18.52■□□□□ 0.56
VPS28-208ENST00000527797 UPB1Q9UBR1 384 aa18.52■□□□□ 0.56
VPS28-208ENST00000527797 ZFHX4Q86UP3 3567 aa18.52■□□□□ 0.56
VPS28-208ENST00000527797 DNAJC13O75165 2243 aa18.52■□□□□ 0.56
VPS28-208ENST00000527797 WNT11O96014 354 aa18.52■□□□□ 0.55
VPS28-208ENST00000527797 H2BFMP0C1H6 154 aa18.52■□□□□ 0.55
VPS28-208ENST00000527797 GABRA1P14867 456 aa18.52■□□□□ 0.55
VPS28-208ENST00000527797 ZNF182P17025 639 aaPredicted RBP18.52■□□□□ 0.55
VPS28-208ENST00000527797 GALP22466 123 aa18.52■□□□□ 0.55
VPS28-208ENST00000527797 HOXD11P31277 338 aaPredicted RBP18.52■□□□□ 0.55
VPS28-208ENST00000527797 UGT2B10P36537 528 aa18.52■□□□□ 0.55
VPS28-208ENST00000527797 GDI2P50395 445 aaKnown RBP18.52■□□□□ 0.55
VPS28-208ENST00000527797 ALKBH1Q13686 389 aaKnown RBP18.52■□□□□ 0.55
VPS28-208ENST00000527797 NSUN5P2Q63ZY6 315 aa18.52■□□□□ 0.55
VPS28-208ENST00000527797 OR7E24Q6IFN5 339 aa18.52■□□□□ 0.55
VPS28-208ENST00000527797 HIST2H2ABQ8IUE6 130 aaPredicted RBP18.52■□□□□ 0.55
VPS28-208ENST00000527797 MS4A15Q8N5U1 240 aa18.52■□□□□ 0.55
VPS28-208ENST00000527797 RNF166Q96A37 237 aaPredicted RBP18.52■□□□□ 0.55
VPS28-208ENST00000527797 PGLYRP3Q96LB9 341 aa18.52■□□□□ 0.55
VPS28-208ENST00000527797 RNF167Q9H6Y7 350 aa18.52■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms