RNA–Protein interactions for RNA: ENST00000515420.1

CLCN3-210, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 3

Gene CLCN3, Length 735 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-210ENST00000515420 ZNF416Q9BWM5 594 aa11□□□□□ -0.65
CLCN3-210ENST00000515420 MRPL37Q9BZE1 423 aaKnown RBP11□□□□□ -0.65
CLCN3-210ENST00000515420 MS4A5Q9H3V2 200 aa11□□□□□ -0.65
CLCN3-210ENST00000515420 REEP1Q9H902 201 aa11□□□□□ -0.65
CLCN3-210ENST00000515420 DYNLRB1Q9NP97 96 aa11□□□□□ -0.65
CLCN3-210ENST00000515420 IL20Q9NYY1 176 aa11□□□□□ -0.65
CLCN3-210ENST00000515420 ATPIF1Q9UII2 106 aa11□□□□□ -0.65
CLCN3-210ENST00000515420 NDRG4Q9ULP0 352 aaKnown RBP11□□□□□ -0.65
CLCN3-210ENST00000515420 SAMHD1Q9Y3Z3 626 aaKnown RBP11□□□□□ -0.65
CLCN3-210ENST00000515420 CDH10Q9Y6N8 788 aa11□□□□□ -0.65
CLCN3-210ENST00000515420 SETD2Q9BYW2 2564 aaPredicted RBP11□□□□□ -0.65
CLCN3-210ENST00000515420 CSPG4Q6UVK1 2322 aa11□□□□□ -0.65
CLCN3-210ENST00000515420 TLN2Q9Y4G6 2542 aa10.99□□□□□ -0.65
CLCN3-210ENST00000515420 IGLV3-9A0A075B6K5 115 aa10.99□□□□□ -0.65
CLCN3-210ENST00000515420 DHRS12A0PJE2 317 aa10.99□□□□□ -0.65
CLCN3-210ENST00000515420 ARRDC5A6NEK1 342 aa10.99□□□□□ -0.65
CLCN3-210ENST00000515420 RNF223E7ERA6 249 aa10.99□□□□□ -0.65
CLCN3-210ENST00000515420 H3BSA7 217 aa10.99□□□□□ -0.65
CLCN3-210ENST00000515420 M0R233 179 aa10.99□□□□□ -0.65
CLCN3-210ENST00000515420 SMAD7O15105 426 aaKnown RBP10.99□□□□□ -0.65
CLCN3-210ENST00000515420 SLC16A7O60669 478 aa10.99□□□□□ -0.65
CLCN3-210ENST00000515420 PPP1R3DO95685 299 aa10.99□□□□□ -0.65
CLCN3-210ENST00000515420 RENP00797 406 aa10.99□□□□□ -0.65
CLCN3-210ENST00000515420 ZNF250P15622 560 aa10.99□□□□□ -0.65
CLCN3-210ENST00000515420 GSTM3P21266 225 aa10.99□□□□□ -0.65
CLCN3-210ENST00000515420 NOS3P29474 1203 aa10.99□□□□□ -0.65
CLCN3-210ENST00000515420 CDKN2AP42771 156 aaKnown RBP10.99□□□□□ -0.65
CLCN3-210ENST00000515420 GDI2P50395 445 aaKnown RBP10.99□□□□□ -0.65
CLCN3-210ENST00000515420 PDLIM4P50479 330 aa10.99□□□□□ -0.65
CLCN3-210ENST00000515420 RASSF2P50749 326 aa10.99□□□□□ -0.65
CLCN3-210ENST00000515420 UCP2P55851 309 aa10.99□□□□□ -0.65
CLCN3-210ENST00000515420 SELENOVP59797 346 aa10.99□□□□□ -0.65
CLCN3-210ENST00000515420 BNIP1Q12981 228 aa10.99□□□□□ -0.65
CLCN3-210ENST00000515420 AQP6Q13520 282 aa10.99□□□□□ -0.65
CLCN3-210ENST00000515420 FLOT2Q14254 428 aa10.99□□□□□ -0.65
CLCN3-210ENST00000515420 MSMPQ1L6U9 139 aa10.99□□□□□ -0.65
CLCN3-210ENST00000515420 MICAQ29983 383 aa10.99□□□□□ -0.65
CLCN3-210ENST00000515420 ADGRG5Q8IZF4 528 aa10.99□□□□□ -0.65
CLCN3-210ENST00000515420 PAQR4Q8N4S7 273 aaPredicted RBP10.99□□□□□ -0.65
CLCN3-210ENST00000515420 OR9Q2Q8NGE9 314 aa10.99□□□□□ -0.65
CLCN3-210ENST00000515420 C10orf105Q8TEF2 133 aa10.99□□□□□ -0.65
CLCN3-210ENST00000515420 SAMD8Q96LT4 415 aa10.99□□□□□ -0.65
CLCN3-210ENST00000515420 SMR3AQ99954 134 aa10.99□□□□□ -0.65
CLCN3-210ENST00000515420 VRK1Q99986 396 aaPredicted RBP10.99□□□□□ -0.65
CLCN3-210ENST00000515420 DGCR6LQ9BY27 220 aa10.99□□□□□ -0.65
CLCN3-210ENST00000515420 NUAK2Q9H093 628 aa10.99□□□□□ -0.65
CLCN3-210ENST00000515420 RACGAP1Q9H0H5 632 aa10.99□□□□□ -0.65
CLCN3-210ENST00000515420 WNT5BQ9H1J7 359 aa10.99□□□□□ -0.65
CLCN3-210ENST00000515420 EIF3KQ9UBQ5 218 aaKnown RBP10.99□□□□□ -0.65
CLCN3-210ENST00000515420 GPR160Q9UJ42 338 aa10.99□□□□□ -0.65
CLCN3-210ENST00000515420 IGHV4-30-2A0A087WSY4 118 aa10.98□□□□□ -0.65
CLCN3-210ENST00000515420 A0A096LNT2 108 aa10.98□□□□□ -0.65
CLCN3-210ENST00000515420 LOC390937A0A1W2PQ73 354 aa10.98□□□□□ -0.65
CLCN3-210ENST00000515420 ATP5HO75947 161 aa10.98□□□□□ -0.65
CLCN3-210ENST00000515420 LY6G6DO95868 133 aa10.98□□□□□ -0.65
CLCN3-210ENST00000515420 CST1P01037 141 aa10.98□□□□□ -0.65
CLCN3-210ENST00000515420 FAM157BP0CG42 384 aa10.98□□□□□ -0.65
CLCN3-210ENST00000515420 CCL2P13500 99 aa10.98□□□□□ -0.65
CLCN3-210ENST00000515420 HIST1H1CP16403 213 aaKnown RBP10.98□□□□□ -0.65
CLCN3-210ENST00000515420 TUBG1P23258 451 aa10.98□□□□□ -0.65
CLCN3-210ENST00000515420 KLF3P57682 345 aaPredicted RBP10.98□□□□□ -0.65
CLCN3-210ENST00000515420 GLO1Q04760 184 aa10.98□□□□□ -0.65
CLCN3-210ENST00000515420 LOXL1Q08397 574 aaPredicted RBP10.98□□□□□ -0.65
CLCN3-210ENST00000515420 MOGQ16653 247 aa10.98□□□□□ -0.65
CLCN3-210ENST00000515420 LEG1Q6P5S2 330 aa10.98□□□□□ -0.65
CLCN3-210ENST00000515420 ARL9Q6T311 187 aa10.98□□□□□ -0.65
CLCN3-210ENST00000515420 CD300LDQ6UXZ3 194 aa10.98□□□□□ -0.65
CLCN3-210ENST00000515420 ZBTB46Q86UZ6 589 aa10.98□□□□□ -0.65
CLCN3-210ENST00000515420 AKR7LQ8NHP1 331 aa10.98□□□□□ -0.65
CLCN3-210ENST00000515420 CANT1Q8WVQ1 401 aa10.98□□□□□ -0.65
CLCN3-210ENST00000515420 C11orf40Q8WZ69 217 aa10.98□□□□□ -0.65
CLCN3-210ENST00000515420 CHID1Q9BWS9 393 aa10.98□□□□□ -0.65
CLCN3-210ENST00000515420 YY1AP1Q9H869 796 aa10.98□□□□□ -0.65
CLCN3-210ENST00000515420 TUBG2Q9NRH3 451 aa10.98□□□□□ -0.65
CLCN3-210ENST00000515420 SLCO1C1Q9NYB5 712 aa10.98□□□□□ -0.65
CLCN3-210ENST00000515420 BAIAP2Q9UQB8 552 aa10.98□□□□□ -0.65
CLCN3-210ENST00000515420 COA3Q9Y2R0 106 aaPredicted RBP10.98□□□□□ -0.65
CLCN3-210ENST00000515420 ABCA1O95477 2261 aa10.98□□□□□ -0.65
CLCN3-210ENST00000515420 HIVEP2P31629 2446 aa10.98□□□□□ -0.65
CLCN3-210ENST00000515420 YLPM1P49750 1951 aaKnown RBP10.97□□□□□ -0.65
CLCN3-210ENST00000515420 NIPBLQ6KC79 2804 aaeCLIP10.97□□□□□ -0.65
CLCN3-210ENST00000515420 LOC100509620A0A075B734 347 aa10.97□□□□□ -0.65
CLCN3-210ENST00000515420 IGLV1-36A0A0B4J1U3 117 aa10.97□□□□□ -0.65
CLCN3-210ENST00000515420 TCRBV3S1A0A5B6 114 aa10.97□□□□□ -0.65
CLCN3-210ENST00000515420 C5orf49A4QMS7 147 aa10.97□□□□□ -0.65
CLCN3-210ENST00000515420 VWC2LB2RUY7 222 aa10.97□□□□□ -0.65
CLCN3-210ENST00000515420 J3QW42 95 aa10.97□□□□□ -0.65
CLCN3-210ENST00000515420 BHLHE40O14503 412 aa10.97□□□□□ -0.65
CLCN3-210ENST00000515420 SGCEO43556 437 aa10.97□□□□□ -0.65
CLCN3-210ENST00000515420 GASTP01350 101 aa10.97□□□□□ -0.65
CLCN3-210ENST00000515420 SCG5P05408 212 aa10.97□□□□□ -0.65
CLCN3-210ENST00000515420 LCKP06239 509 aa10.97□□□□□ -0.65
CLCN3-210ENST00000515420 IGFBP1P08833 259 aaPredicted RBP10.97□□□□□ -0.65
CLCN3-210ENST00000515420 ADRA2AP08913 450 aa10.97□□□□□ -0.65
CLCN3-210ENST00000515420 COX10Q12887 443 aa10.97□□□□□ -0.65
CLCN3-210ENST00000515420 LNX2Q8N448 690 aa10.97□□□□□ -0.65
CLCN3-210ENST00000515420 AQP11Q8NBQ7 271 aa10.97□□□□□ -0.65
CLCN3-210ENST00000515420 ZNF540Q8NDQ6 660 aa10.97□□□□□ -0.65
CLCN3-210ENST00000515420 SYNPRQ8TBG9 265 aa10.97□□□□□ -0.65
CLCN3-210ENST00000515420 IPCEF1Q8WWN9 437 aaPredicted RBP10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms