RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 NOX3Q9HBY0 568 aa13.06□□□□□ -0.32
NUP54-213ENST00000513352 AASSQ9UDR5 926 aa13.06□□□□□ -0.32
NUP54-213ENST00000513352 COMMD3-BMI1R4GMX3 469 aa13.06□□□□□ -0.32
NUP54-213ENST00000513352 E9PQ18 207 aa13.05□□□□□ -0.32
NUP54-213ENST00000513352 MPZL2O60487 215 aa13.05□□□□□ -0.32
NUP54-213ENST00000513352 TFP02787 698 aa13.05□□□□□ -0.32
NUP54-213ENST00000513352 MRPL3P09001 348 aaKnown RBP13.05□□□□□ -0.32
NUP54-213ENST00000513352 ZNF32P17041 273 aa13.05□□□□□ -0.32
NUP54-213ENST00000513352 SLC2A5P22732 501 aa13.05□□□□□ -0.32
NUP54-213ENST00000513352 ARR3P36575 388 aa13.05□□□□□ -0.32
NUP54-213ENST00000513352 NAA10P41227 235 aaPredicted RBP13.05□□□□□ -0.32
NUP54-213ENST00000513352 HSPA13P48723 471 aa13.05□□□□□ -0.32
NUP54-213ENST00000513352 LSM6P62312 80 aaKnown RBP13.05□□□□□ -0.32
NUP54-213ENST00000513352 ADARB1P78563 741 aaKnown RBP13.05□□□□□ -0.32
NUP54-213ENST00000513352 PLP2Q04941 152 aa13.05□□□□□ -0.32
NUP54-213ENST00000513352 AQP6Q13520 282 aa13.05□□□□□ -0.32
NUP54-213ENST00000513352 HIST2H2BCQ6DN03 193 aa13.05□□□□□ -0.32
NUP54-213ENST00000513352 CORO6Q6QEF8 472 aa13.05□□□□□ -0.32
NUP54-213ENST00000513352 MEPCEQ7L2J0 689 aaKnown RBP13.05□□□□□ -0.32
NUP54-213ENST00000513352 ENTHD1Q8IYW4 607 aa13.05□□□□□ -0.32
NUP54-213ENST00000513352 C8orf59Q8N0T1 100 aaPredicted RBP13.05□□□□□ -0.32
NUP54-213ENST00000513352 AKR7LQ8NHP1 331 aa13.05□□□□□ -0.32
NUP54-213ENST00000513352 TRUB1Q8WWH5 349 aaKnown RBP13.05□□□□□ -0.32
NUP54-213ENST00000513352 PIK3IP1Q96FE7 263 aa13.05□□□□□ -0.32
NUP54-213ENST00000513352 ZNF582Q96NG8 517 aaPredicted RBP13.05□□□□□ -0.32
NUP54-213ENST00000513352 INTS14Q96SY0 518 aa13.05□□□□□ -0.32
NUP54-213ENST00000513352 KCNS3Q9BQ31 491 aa13.05□□□□□ -0.32
NUP54-213ENST00000513352 HEATR1Q9H583 2144 aaKnown RBP13.05□□□□□ -0.32
NUP54-213ENST00000513352 WDR76Q9H967 626 aa13.05□□□□□ -0.32
NUP54-213ENST00000513352 MRPL22Q9NWU5 206 aaKnown RBP13.05□□□□□ -0.32
NUP54-213ENST00000513352 CLN6Q9NWW5 311 aa13.05□□□□□ -0.32
NUP54-213ENST00000513352 ZNF224Q9NZL3 707 aa13.05□□□□□ -0.32
NUP54-213ENST00000513352 NPAP1Q9NZP6 1156 aa13.05□□□□□ -0.32
NUP54-213ENST00000513352 ASH2LQ9UBL3 628 aa13.05□□□□□ -0.32
NUP54-213ENST00000513352 IQCMA0A1B0GVH7 501 aa13.04□□□□□ -0.32
NUP54-213ENST00000513352 CCDC182A6NF36 153 aa13.04□□□□□ -0.32
NUP54-213ENST00000513352 SLC22A31A6NKX4 558 aa13.04□□□□□ -0.32
NUP54-213ENST00000513352 H0YAE9 185 aa13.04□□□□□ -0.32
NUP54-213ENST00000513352 H0YJX3 145 aa13.04□□□□□ -0.32
NUP54-213ENST00000513352 SELENOFO60613 162 aa13.04□□□□□ -0.32
NUP54-213ENST00000513352 TMCC2O75069 709 aa13.04□□□□□ -0.32
NUP54-213ENST00000513352 HRGP04196 525 aa13.04□□□□□ -0.32
NUP54-213ENST00000513352 CBR1P16152 277 aa13.04□□□□□ -0.32
NUP54-213ENST00000513352 CRYGSP22914 178 aa13.04□□□□□ -0.32
NUP54-213ENST00000513352 RPS27P42677 84 aaKnown RBP13.04□□□□□ -0.32
NUP54-213ENST00000513352 ENTPD1P49961 510 aa13.04□□□□□ -0.32
NUP54-213ENST00000513352 SNRPGP62308 76 aaKnown RBP13.04□□□□□ -0.32
NUP54-213ENST00000513352 EFNB1P98172 346 aa13.04□□□□□ -0.32
NUP54-213ENST00000513352 SCRN3Q0VDG4 424 aa13.04□□□□□ -0.32
NUP54-213ENST00000513352 RAB39AQ14964 217 aa13.04□□□□□ -0.32
NUP54-213ENST00000513352 KCNMB1Q16558 191 aa13.04□□□□□ -0.32
NUP54-213ENST00000513352 PABPC1L2AQ5JQF8 200 aa13.04□□□□□ -0.32
NUP54-213ENST00000513352 LINC01590Q5TEZ4 76 aa13.04□□□□□ -0.32
NUP54-213ENST00000513352 AADACL4Q5VUY2 407 aa13.04□□□□□ -0.32
NUP54-213ENST00000513352 ZNF691Q5VV52 312 aa13.04□□□□□ -0.32
NUP54-213ENST00000513352 TMEM154Q6P9G4 183 aa13.04□□□□□ -0.32
NUP54-213ENST00000513352 RFKQ969G6 155 aa13.04□□□□□ -0.32
NUP54-213ENST00000513352 PLPPR2Q96GM1 343 aa13.04□□□□□ -0.32
NUP54-213ENST00000513352 MOV10Q9HCE1 1003 aaKnown RBP13.04□□□□□ -0.32
NUP54-213ENST00000513352 KCNN3Q9UGI6 736 aa13.04□□□□□ -0.32
NUP54-213ENST00000513352 KCNG2Q9UJ96 466 aa13.04□□□□□ -0.32
NUP54-213ENST00000513352 TIMM10BQ9Y5J6 103 aa13.04□□□□□ -0.32
NUP54-213ENST00000513352 UTP20O75691 2785 aaKnown RBP13.03□□□□□ -0.32
NUP54-213ENST00000513352 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.03□□□□□ -0.32
NUP54-213ENST00000513352 ZNF593O00488 134 aaPredicted RBP13.03□□□□□ -0.32
NUP54-213ENST00000513352 DOK2O60496 412 aa13.03□□□□□ -0.32
NUP54-213ENST00000513352 ENTPD6O75354 484 aa13.03□□□□□ -0.32
NUP54-213ENST00000513352 CELA3BP08861 270 aa13.03□□□□□ -0.32
NUP54-213ENST00000513352 GNAO1P09471 354 aa13.03□□□□□ -0.32
NUP54-213ENST00000513352 PAX7P23759 505 aa13.03□□□□□ -0.32
NUP54-213ENST00000513352 ATP6V1E1P36543 226 aa13.03□□□□□ -0.32
NUP54-213ENST00000513352 IL18R1Q13478 541 aa13.03□□□□□ -0.32
NUP54-213ENST00000513352 BEX5Q5H9J7 111 aa13.03□□□□□ -0.32
NUP54-213ENST00000513352 C1QTNF12Q5T7M4 302 aa13.03□□□□□ -0.32
NUP54-213ENST00000513352 MEDAGQ5VYS4 303 aa13.03□□□□□ -0.32
NUP54-213ENST00000513352 TMEM108Q6UXF1 575 aa13.03□□□□□ -0.32
NUP54-213ENST00000513352 MS4A3Q96HJ5 214 aa13.03□□□□□ -0.32
NUP54-213ENST00000513352 CNN2Q99439 309 aaKnown RBP13.03□□□□□ -0.32
NUP54-213ENST00000513352 TEAD3Q99594 435 aa13.03□□□□□ -0.32
NUP54-213ENST00000513352 OR2H1Q9GZK4 316 aa13.03□□□□□ -0.32
NUP54-213ENST00000513352 ESRP2Q9H6T0 727 aaKnown RBP13.03□□□□□ -0.32
NUP54-213ENST00000513352 B3GNT2Q9NY97 397 aa13.03□□□□□ -0.32
NUP54-213ENST00000513352 PLEK2Q9NYT0 353 aa13.03□□□□□ -0.32
NUP54-213ENST00000513352 FBXL3Q9UKT7 428 aa13.03□□□□□ -0.32
NUP54-213ENST00000513352 LHFPL6Q9Y693 200 aa13.03□□□□□ -0.32
NUP54-213ENST00000513352 IGHV1-18A0A0C4DH31 117 aa13.02□□□□□ -0.33
NUP54-213ENST00000513352 SNTNA6NMZ2 147 aa13.02□□□□□ -0.33
NUP54-213ENST00000513352 A6NNC1 897 aa13.02□□□□□ -0.33
NUP54-213ENST00000513352 RER1O15258 196 aa13.02□□□□□ -0.33
NUP54-213ENST00000513352 SGCEO43556 437 aa13.02□□□□□ -0.33
NUP54-213ENST00000513352 APOL3O95236 402 aa13.02□□□□□ -0.33
NUP54-213ENST00000513352 PTHP01270 115 aa13.02□□□□□ -0.33
NUP54-213ENST00000513352 MMP7P09237 267 aaPredicted RBP13.02□□□□□ -0.33
NUP54-213ENST00000513352 CECR9P0C854 216 aa13.02□□□□□ -0.33
NUP54-213ENST00000513352 APEX1P27695 318 aaKnown RBP13.02□□□□□ -0.33
NUP54-213ENST00000513352 HTR1FP30939 366 aa13.02□□□□□ -0.33
NUP54-213ENST00000513352 APLNRP35414 380 aa13.02□□□□□ -0.33
NUP54-213ENST00000513352 HTR5AP47898 357 aa13.02□□□□□ -0.33
NUP54-213ENST00000513352 NUDT6P53370 316 aa13.02□□□□□ -0.33
NUP54-213ENST00000513352 PSG4Q00888 419 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms