RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 PRAMEF19Q5SWL8 479 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 ZNF678Q5SXM1 525 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 C11orf87Q6NUJ2 197 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 SFXN4Q6P4A7 337 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 SLC25A34Q6PIV7 304 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 OGFOD3Q6PK18 319 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 ABHD15Q6UXT9 468 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 LYG2Q86SG7 212 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 ADGRG5Q8IZF4 528 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 PNKDQ8N490 385 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 TMEM229BQ8NBD8 167 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 DNERQ8NFT8 737 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 C2orf15Q8WU43 125 aaKnown RBP3.3□□□□□ -1.88
USP53-205ENST00000509769 SOCS4Q8WXH5 440 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 OVCA2Q8WZ82 227 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 HAS1Q92839 578 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 GPR137Q96N19 417 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 SLC25A33Q9BSK2 321 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 ALKBH7Q9BT30 221 aaPredicted RBP3.3□□□□□ -1.88
USP53-205ENST00000509769 SSBP4Q9BWG4 385 aaPredicted RBP3.3□□□□□ -1.88
USP53-205ENST00000509769 RIOX1Q9H6W3 641 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 TUBA4BQ9H853 241 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 MARCH5Q9NX47 278 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 OR1A1Q9P1Q5 309 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 DNMT3BQ9UBC3 853 aaKnown RBP3.3□□□□□ -1.88
USP53-205ENST00000509769 PIN4Q9Y237 131 aaKnown RBP3.3□□□□□ -1.88
USP53-205ENST00000509769 FCF1Q9Y324 198 aaKnown RBP3.3□□□□□ -1.88
USP53-205ENST00000509769 WIPI2Q9Y4P8 454 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 SNX11Q9Y5W9 270 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 BACE2Q9Y5Z0 518 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 TEX264Q9Y6I9 313 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 A0A1B0GTI1 187 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 KBTBD11-OT1A0A1B0GTJ5 212 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 A0A1B0GVG6 124 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 ANKRD61A6NGH8 418 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 SLC15A5A6NIM6 579 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 FIGNL2A6NMB9 653 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 IFITM10A6NMD0 228 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 LACTBL1A8MY62 500 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 ANKRD66B4E2M5 251 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 M0R082 166 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 FFAR2O15552 330 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 VNN1O95497 513 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 ZNF728P0DKX0 622 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 POU3F2P20265 443 aaPredicted RBP3.3□□□□□ -1.88
USP53-205ENST00000509769 IGFBP4P22692 258 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 IL3RAP26951 378 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 RPL12P30050 165 aaKnown RBP3.3□□□□□ -1.88
USP53-205ENST00000509769 LIPAP38571 399 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 AKR1C3P42330 323 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 SUOXP51687 545 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 SELENOWP63302 87 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 UBE2L3P68036 154 aaKnown RBP3.3□□□□□ -1.88
USP53-205ENST00000509769 SHC2P98077 582 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 BEX3Q00994 111 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 SURF2Q15527 256 aaPredicted RBP3.3□□□□□ -1.88
USP53-205ENST00000509769 LTC4SQ16873 150 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 MPV17LQ2QL34 196 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 Q499Y3 187 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 UNC50Q53HI1 259 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 LDLRAD1Q5T700 205 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 SUSD4Q5VX71 490 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 ZFAND6Q6FIF0 208 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 GLDNQ6ZMI3 551 aaPredicted RBP3.3□□□□□ -1.88
USP53-205ENST00000509769 DPY19L2P2Q6ZN68 376 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 TCF23Q7RTU1 214 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 B3GNT8Q7Z7M8 397 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 ZNF100Q8IYN0 542 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 ARRDC1Q8N5I2 433 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 SDR9C7Q8NEX9 313 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 OR2AK2Q8NG84 335 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 OR8D4Q8NGM9 314 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 WFIKKN2Q8TEU8 576 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 PGAM5Q96HS1 289 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 ADTRPQ96IZ2 230 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 SDF2Q99470 211 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 DDOQ99489 341 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 P2RX4Q99571 388 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 GABRG3Q99928 467 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 NDUFAF3Q9BU61 184 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 CD244Q9BZW8 370 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 CHST6Q9GZX3 395 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 EGLN3Q9H6Z9 239 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 KIR3DX1Q9H7L2 352 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 UQCC1Q9NVA1 299 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 FLRT3Q9NZU0 649 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 KDM3BQ7LBC6 1761 aa3.3□□□□□ -1.88
USP53-205ENST00000509769 PDE4DIPQ5VU43 2346 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 ZC3H12DA2A288 527 aaKnown RBP3.29□□□□□ -1.88
USP53-205ENST00000509769 CD8B2A6NJW9 211 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 TMEM150CB9EJG8 249 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 C9JVG2 144 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 PEX12O00623 359 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 TNFSF11O14788 317 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 VEGFDO43915 354 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 ZNF354AO60765 605 aaPredicted RBP3.29□□□□□ -1.88
USP53-205ENST00000509769 XYLBO75191 536 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 PTHP01270 115 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 OR5AL1P0C617 328 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 EPXP11678 715 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms