RNA–Protein interactions for RNA: ENST00000506630.1

TCOF1-209, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 897 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-209ENST00000506630 EMC7Q9NPA0 242 aa11.33□□□□□ -0.6
TCOF1-209ENST00000506630 POLE4Q9NR33 117 aa11.33□□□□□ -0.6
TCOF1-209ENST00000506630 PDP1Q9P0J1 537 aaPredicted RBP11.33□□□□□ -0.6
TCOF1-209ENST00000506630 SPEF1Q9Y4P9 236 aa11.33□□□□□ -0.6
TCOF1-209ENST00000506630 ZANQ9Y493 2812 aa11.32□□□□□ -0.6
TCOF1-209ENST00000506630 CR1P17927 2039 aa11.32□□□□□ -0.6
TCOF1-209ENST00000506630 ARPC3O15145 178 aa11.32□□□□□ -0.6
TCOF1-209ENST00000506630 TLX2O43763 284 aaPredicted RBP11.32□□□□□ -0.6
TCOF1-209ENST00000506630 KHDRBS3O75525 346 aaKnown RBP11.32□□□□□ -0.6
TCOF1-209ENST00000506630 TIPRLO75663 272 aa11.32□□□□□ -0.6
TCOF1-209ENST00000506630 PTHP01270 115 aa11.32□□□□□ -0.6
TCOF1-209ENST00000506630 CST2P09228 141 aa11.32□□□□□ -0.6
TCOF1-209ENST00000506630 OR4A8P0C604 315 aa11.32□□□□□ -0.6
TCOF1-209ENST00000506630 CCL2P13500 99 aa11.32□□□□□ -0.6
TCOF1-209ENST00000506630 ZNF35P13682 527 aa11.32□□□□□ -0.6
TCOF1-209ENST00000506630 GSTM3P21266 225 aa11.32□□□□□ -0.6
TCOF1-209ENST00000506630 APLNRP35414 380 aa11.32□□□□□ -0.6
TCOF1-209ENST00000506630 THBS4P35443 961 aa11.32□□□□□ -0.6
TCOF1-209ENST00000506630 CENPAP49450 140 aa11.32□□□□□ -0.6
TCOF1-209ENST00000506630 SNRPD2P62316 118 aaKnown RBP11.32□□□□□ -0.6
TCOF1-209ENST00000506630 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.32□□□□□ -0.6
TCOF1-209ENST00000506630 ADIPOQQ15848 244 aa11.32□□□□□ -0.6
TCOF1-209ENST00000506630 PABPC1L2AQ5JQF8 200 aa11.32□□□□□ -0.6
TCOF1-209ENST00000506630 FAM27BQ5VT28 67 aa11.32□□□□□ -0.6
TCOF1-209ENST00000506630 TMEM179BQ7Z7N9 219 aa11.32□□□□□ -0.6
TCOF1-209ENST00000506630 HIPK1Q86Z02 1210 aa11.32□□□□□ -0.6
TCOF1-209ENST00000506630 MAPK1IP1LQ8NDC0 245 aa11.32□□□□□ -0.6
TCOF1-209ENST00000506630 SDR9C7Q8NEX9 313 aa11.32□□□□□ -0.6
TCOF1-209ENST00000506630 OR52E2Q8NGJ4 325 aa11.32□□□□□ -0.6
TCOF1-209ENST00000506630 OR8D4Q8NGM9 314 aa11.32□□□□□ -0.6
TCOF1-209ENST00000506630 SLCO4A1Q96BD0 722 aa11.32□□□□□ -0.6
TCOF1-209ENST00000506630 TSSK2Q96PF2 358 aa11.32□□□□□ -0.6
TCOF1-209ENST00000506630 NMNAT3Q96T66 252 aa11.32□□□□□ -0.6
TCOF1-209ENST00000506630 NIPSNAP1Q9BPW8 284 aa11.32□□□□□ -0.6
TCOF1-209ENST00000506630 ZNF416Q9BWM5 594 aa11.32□□□□□ -0.6
TCOF1-209ENST00000506630 GRIP2Q9C0E4 1043 aa11.32□□□□□ -0.6
TCOF1-209ENST00000506630 OR51B6Q9H340 312 aa11.32□□□□□ -0.6
TCOF1-209ENST00000506630 ZNF442Q9H7R0 627 aa11.32□□□□□ -0.6
TCOF1-209ENST00000506630 RPRD1BQ9NQG5 326 aaKnown RBP11.32□□□□□ -0.6
TCOF1-209ENST00000506630 ARMC1Q9NVT9 282 aa11.32□□□□□ -0.6
TCOF1-209ENST00000506630 GDF2Q9UK05 429 aaPredicted RBP11.32□□□□□ -0.6
TCOF1-209ENST00000506630 COA3Q9Y2R0 106 aaPredicted RBP11.32□□□□□ -0.6
TCOF1-209ENST00000506630 MXRA5Q9NR99 2828 aa11.31□□□□□ -0.6
TCOF1-209ENST00000506630 C12orf71A8MTZ7 269 aa11.31□□□□□ -0.6
TCOF1-209ENST00000506630 VSTM5A8MXK1 200 aa11.31□□□□□ -0.6
TCOF1-209ENST00000506630 IDH3BO43837 385 aa11.31□□□□□ -0.6
TCOF1-209ENST00000506630 GPRIN2O60269 458 aa11.31□□□□□ -0.6
TCOF1-209ENST00000506630 NDUFS7O75251 213 aa11.31□□□□□ -0.6
TCOF1-209ENST00000506630 SCG5P05408 212 aa11.31□□□□□ -0.6
TCOF1-209ENST00000506630 IGFBP1P08833 259 aaPredicted RBP11.31□□□□□ -0.6
TCOF1-209ENST00000506630 BMP4P12644 408 aa11.31□□□□□ -0.6
TCOF1-209ENST00000506630 CCNOP22674 350 aa11.31□□□□□ -0.6
TCOF1-209ENST00000506630 NR4A1P22736 598 aa11.31□□□□□ -0.6
TCOF1-209ENST00000506630 APEX1P27695 318 aaKnown RBP11.31□□□□□ -0.6
TCOF1-209ENST00000506630 CRABP1P29762 137 aa11.31□□□□□ -0.6
TCOF1-209ENST00000506630 SERPINF1P36955 418 aa11.31□□□□□ -0.6
TCOF1-209ENST00000506630 PCBD1P61457 104 aa11.31□□□□□ -0.6
TCOF1-209ENST00000506630 RPS23P62266 143 aaKnown RBP11.31□□□□□ -0.6
TCOF1-209ENST00000506630 ENDOGQ14249 297 aaKnown RBP11.31□□□□□ -0.6
TCOF1-209ENST00000506630 OTPQ5XKR4 325 aa11.31□□□□□ -0.6
TCOF1-209ENST00000506630 UGT2A3Q6UWM9 527 aa11.31□□□□□ -0.6
TCOF1-209ENST00000506630 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.31□□□□□ -0.6
TCOF1-209ENST00000506630 GLB1L2Q8IW92 636 aa11.31□□□□□ -0.6
TCOF1-209ENST00000506630 PAPD5Q8NDF8 572 aaKnown RBP11.31□□□□□ -0.6
TCOF1-209ENST00000506630 OR1J2Q8NGS2 313 aa11.31□□□□□ -0.6
TCOF1-209ENST00000506630 AKR7LQ8NHP1 331 aa11.31□□□□□ -0.6
TCOF1-209ENST00000506630 SNX18Q96RF0 628 aa11.31□□□□□ -0.6
TCOF1-209ENST00000506630 FEVQ99581 238 aa11.31□□□□□ -0.6
TCOF1-209ENST00000506630 TSSK6Q9BXA6 273 aa11.31□□□□□ -0.6
TCOF1-209ENST00000506630 REG4Q9BYZ8 158 aa11.31□□□□□ -0.6
TCOF1-209ENST00000506630 FN3KQ9H479 309 aa11.31□□□□□ -0.6
TCOF1-209ENST00000506630 PLK3Q9H4B4 646 aa11.31□□□□□ -0.6
TCOF1-209ENST00000506630 SRA1Q9HD15 236 aaKnown RBP11.31□□□□□ -0.6
TCOF1-209ENST00000506630 YAE1D1Q9NRH1 226 aa11.31□□□□□ -0.6
TCOF1-209ENST00000506630 IL20Q9NYY1 176 aa11.31□□□□□ -0.6
TCOF1-209ENST00000506630 DNAJB9Q9UBS3 223 aa11.31□□□□□ -0.6
TCOF1-209ENST00000506630 POLR1DQ9Y2S0 133 aa11.31□□□□□ -0.6
TCOF1-209ENST00000506630 CMAHPQ9Y471 501 aa11.31□□□□□ -0.6
TCOF1-209ENST00000506630 PMF1-BGLAPU3KQ54 211 aa11.31□□□□□ -0.6
TCOF1-209ENST00000506630 CUBNO60494 3623 aa11.3□□□□□ -0.6
TCOF1-209ENST00000506630 ARRDC5A6NEK1 342 aa11.3□□□□□ -0.6
TCOF1-209ENST00000506630 B9A039 149 aa11.3□□□□□ -0.6
TCOF1-209ENST00000506630 H3BN98 237 aa11.3□□□□□ -0.6
TCOF1-209ENST00000506630 DCTN6O00399 190 aa11.3□□□□□ -0.6
TCOF1-209ENST00000506630 EBAG9O00559 213 aa11.3□□□□□ -0.6
TCOF1-209ENST00000506630 BHLHE40O14503 412 aa11.3□□□□□ -0.6
TCOF1-209ENST00000506630 DEAF1O75398 565 aaPredicted RBP11.3□□□□□ -0.6
TCOF1-209ENST00000506630 GPANK1O95872 356 aa11.3□□□□□ -0.6
TCOF1-209ENST00000506630 F12P00748 615 aaPredicted RBP11.3□□□□□ -0.6
TCOF1-209ENST00000506630 IGHV4-39P01824 125 aa11.3□□□□□ -0.6
TCOF1-209ENST00000506630 FAM157BP0CG42 384 aa11.3□□□□□ -0.6
TCOF1-209ENST00000506630 STOMP27105 288 aa11.3□□□□□ -0.6
TCOF1-209ENST00000506630 GLRXP35754 106 aa11.3□□□□□ -0.6
TCOF1-209ENST00000506630 ARHGDIAP52565 204 aa11.3□□□□□ -0.6
TCOF1-209ENST00000506630 PSG4Q00888 419 aa11.3□□□□□ -0.6
TCOF1-209ENST00000506630 SCRN3Q0VDG4 424 aa11.3□□□□□ -0.6
TCOF1-209ENST00000506630 DBPQ10586 325 aaPredicted RBP11.3□□□□□ -0.6
TCOF1-209ENST00000506630 RAB35Q15286 201 aa11.3□□□□□ -0.6
TCOF1-209ENST00000506630 SWI5Q1ZZU3 235 aa11.3□□□□□ -0.6
TCOF1-209ENST00000506630 CHRFAM7AQ494W8 412 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms