RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, human

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-223	ENST00000494123	CRYGS	P22914	178 aa		12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	COL8A1	P27658	744 aa		12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	GSTT1	P30711	240 aa		12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	CDH11	P55287	796 aa		12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	SNRPG	P62308	76 aa	Known RBP	12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	IL18R1	Q13478	541 aa		12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	AQP6	Q13520	282 aa		12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	ENDOG	Q14249	297 aa	Known RBP	12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	LINC01590	Q5TEZ4	76 aa		12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	AADACL4	Q5VUY2	407 aa		12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	LYPD4	Q6UWN0	246 aa		12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	MEPCE	Q7L2J0	689 aa	Known RBP	12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	ERI1	Q8IV48	349 aa	Known RBP	12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	ENTHD1	Q8IYW4	607 aa		12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	OR2AJ1	Q8NGZ0	328 aa		12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	FGFBP3	Q8TAT2	258 aa		12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	RFK	Q969G6	155 aa		12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	FBXO17	Q96EF6	278 aa		12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	WAC	Q9BTA9	647 aa		12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	RASSF4	Q9H2L5	321 aa		12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	MRPL22	Q9NWU5	206 aa	Known RBP	12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	B3GNT2	Q9NY97	397 aa		12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	DNAJC27	Q9NZQ0	273 aa		12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	ASH2L	Q9UBL3	628 aa		12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	KCNN3	Q9UGI6	736 aa		12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	FBXL3	Q9UKT7	428 aa		12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	COMMD3-BMI1	R4GMX3	469 aa		12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	COL12A1	Q99715	3063 aa		12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	SNTN	A6NMZ2	147 aa		12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	TMCC2	O75069	709 aa		12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	CBR1	P16152	277 aa		12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	ZNF32	P17041	273 aa		12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	PLP2	Q04941	152 aa		12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	SCRN3	Q0VDG4	424 aa		12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	C6orf52	Q5T4I8	152 aa		12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	ZNF691	Q5VV52	312 aa		12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	MEDAG	Q5VYS4	303 aa		12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	B3GLCT	Q6Y288	498 aa		12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	SYT9	Q86SS6	491 aa		12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	ZNF582	Q96NG8	517 aa	Predicted RBP	12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	INTS14	Q96SY0	518 aa		12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	TEAD3	Q99594	435 aa		12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	ESRP2	Q9H6T0	727 aa	Known RBP	12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	NOX3	Q9HBY0	568 aa		12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	CLN6	Q9NWW5	311 aa		12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	NPAP1	Q9NZP6	1156 aa		12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	KCNG2	Q9UJ96	466 aa		12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	TIMM10B	Q9Y5J6	103 aa		12.7	□□□□□ -0.38
BRCA1-223	ENST00000494123	ADGRG4	Q8IZF6	3080 aa		12.69	□□□□□ -0.38
BRCA1-223	ENST00000494123	MMP7	P09237	267 aa	Predicted RBP	12.69	□□□□□ -0.38
BRCA1-223	ENST00000494123	SPARC	P09486	303 aa		12.69	□□□□□ -0.38
BRCA1-223	ENST00000494123	ENTPD1	P49961	510 aa		12.69	□□□□□ -0.38
BRCA1-223	ENST00000494123	IDH3G	P51553	393 aa	Predicted RBP	12.69	□□□□□ -0.38
BRCA1-223	ENST00000494123	BEX5	Q5H9J7	111 aa		12.69	□□□□□ -0.38
BRCA1-223	ENST00000494123	TMEM108	Q6UXF1	575 aa		12.69	□□□□□ -0.38
BRCA1-223	ENST00000494123	LINC00346	Q8IVM7	164 aa		12.69	□□□□□ -0.38
BRCA1-223	ENST00000494123	ALDH16A1	Q8IZ83	802 aa		12.69	□□□□□ -0.38
BRCA1-223	ENST00000494123	C8orf59	Q8N0T1	100 aa	Predicted RBP	12.69	□□□□□ -0.38
BRCA1-223	ENST00000494123	OR6N2	Q8NGY6	317 aa		12.69	□□□□□ -0.38
BRCA1-223	ENST00000494123	TFAP2C	Q92754	450 aa		12.69	□□□□□ -0.38
BRCA1-223	ENST00000494123		Q96MT0	163 aa		12.69	□□□□□ -0.38
BRCA1-223	ENST00000494123	WDR76	Q9H967	626 aa		12.69	□□□□□ -0.38
BRCA1-223	ENST00000494123	AKAP8L	Q9ULX6	646 aa	Known RBP eCLIP	12.69	□□□□□ -0.38
BRCA1-223	ENST00000494123	IQCM	A0A1B0GVH7	501 aa		12.68	□□□□□ -0.38
BRCA1-223	ENST00000494123	CCDC182	A6NF36	153 aa		12.68	□□□□□ -0.38
BRCA1-223	ENST00000494123	ZNF593	O00488	134 aa	Predicted RBP	12.68	□□□□□ -0.38
BRCA1-223	ENST00000494123	ENTPD6	O75354	484 aa		12.68	□□□□□ -0.38
BRCA1-223	ENST00000494123	IGKV3-15	P01624	115 aa		12.68	□□□□□ -0.38
BRCA1-223	ENST00000494123	HTR1F	P30939	366 aa		12.68	□□□□□ -0.38
BRCA1-223	ENST00000494123	RAB39A	Q14964	217 aa		12.68	□□□□□ -0.38
BRCA1-223	ENST00000494123	OCLN	Q16625	522 aa		12.68	□□□□□ -0.38
BRCA1-223	ENST00000494123	PABPC1L2A	Q5JQF8	200 aa		12.68	□□□□□ -0.38
BRCA1-223	ENST00000494123	SLC25A30	Q5SVS4	291 aa		12.68	□□□□□ -0.38
BRCA1-223	ENST00000494123	SEZ6L2	Q6UXD5	910 aa		12.68	□□□□□ -0.38
BRCA1-223	ENST00000494123	FAM169B	Q8N8A8	192 aa		12.68	□□□□□ -0.38
BRCA1-223	ENST00000494123	GJC3	Q8NFK1	279 aa		12.68	□□□□□ -0.38
BRCA1-223	ENST00000494123	RHOXF1	Q8NHV9	184 aa		12.68	□□□□□ -0.38
BRCA1-223	ENST00000494123	PIK3IP1	Q96FE7	263 aa		12.68	□□□□□ -0.38
BRCA1-223	ENST00000494123	PLPPR2	Q96GM1	343 aa		12.68	□□□□□ -0.38
BRCA1-223	ENST00000494123	OR2H1	Q9GZK4	316 aa		12.68	□□□□□ -0.38
BRCA1-223	ENST00000494123	AASS	Q9UDR5	926 aa		12.68	□□□□□ -0.38
BRCA1-223	ENST00000494123	WARS2	Q9UGM6	360 aa	Known RBP	12.68	□□□□□ -0.38
BRCA1-223	ENST00000494123	LHFPL6	Q9Y693	200 aa		12.68	□□□□□ -0.38
BRCA1-223	ENST00000494123	HSPE1-MOB4	S4R3N1	261 aa		12.68	□□□□□ -0.38
BRCA1-223	ENST00000494123	MBD3L2B	A0A1B0GVZ6	204 aa	Predicted RBP	12.67	□□□□□ -0.38
BRCA1-223	ENST00000494123	SGCE	O43556	437 aa		12.67	□□□□□ -0.38
BRCA1-223	ENST00000494123	SELENOF	O60613	162 aa		12.67	□□□□□ -0.38
BRCA1-223	ENST00000494123	PTH	P01270	115 aa		12.67	□□□□□ -0.38
BRCA1-223	ENST00000494123	MRPL3	P09001	348 aa	Known RBP	12.67	□□□□□ -0.38
BRCA1-223	ENST00000494123	GNAO1	P09471	354 aa		12.67	□□□□□ -0.38
BRCA1-223	ENST00000494123	GABRB1	P18505	474 aa		12.67	□□□□□ -0.38
BRCA1-223	ENST00000494123	PTAFR	P25105	342 aa		12.67	□□□□□ -0.38
BRCA1-223	ENST00000494123	ATP6V1E1	P36543	226 aa		12.67	□□□□□ -0.38
BRCA1-223	ENST00000494123	NAA10	P41227	235 aa	Predicted RBP	12.67	□□□□□ -0.38
BRCA1-223	ENST00000494123	RPS27	P42677	84 aa	Known RBP	12.67	□□□□□ -0.38
BRCA1-223	ENST00000494123	NR1H2	P55055	460 aa		12.67	□□□□□ -0.38
BRCA1-223	ENST00000494123	PSG4	Q00888	419 aa		12.67	□□□□□ -0.38
BRCA1-223	ENST00000494123	MAD2L1BP	Q15013	274 aa	Predicted RBP	12.67	□□□□□ -0.38
BRCA1-223	ENST00000494123	CORO6	Q6QEF8	472 aa		12.67	□□□□□ -0.38
BRCA1-223	ENST00000494123	AKR7L	Q8NHP1	331 aa		12.67	□□□□□ -0.38

Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms