RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 GPR35Q9HC97 309 aa19.1■□□□□ 0.65
SMC4-221ENST00000489573 SLCO1C1Q9NYB5 712 aa19.1■□□□□ 0.65
SMC4-221ENST00000489573 STUB1Q9UNE7 303 aa19.1■□□□□ 0.65
SMC4-221ENST00000489573 LAMA5O15230 3695 aa19.1■□□□□ 0.65
SMC4-221ENST00000489573 SS18L1O75177 396 aaPredicted RBP19.1■□□□□ 0.65
SMC4-221ENST00000489573 EDNRAP25101 427 aa19.1■□□□□ 0.65
SMC4-221ENST00000489573 GABRA5P31644 462 aa19.1■□□□□ 0.65
SMC4-221ENST00000489573 LSM3P62310 102 aaKnown RBP19.1■□□□□ 0.65
SMC4-221ENST00000489573 LSM6P62312 80 aaKnown RBP19.1■□□□□ 0.65
SMC4-221ENST00000489573 RPS25P62851 125 aaKnown RBP19.1■□□□□ 0.65
SMC4-221ENST00000489573 MRPS34P82930 218 aaKnown RBP19.1■□□□□ 0.65
SMC4-221ENST00000489573 AQP6Q13520 282 aa19.1■□□□□ 0.65
SMC4-221ENST00000489573 SF3B4Q15427 424 aaKnown RBP eCLIP19.1■□□□□ 0.655e-8■■■■□ 22.8
SMC4-221ENST00000489573 RPTNQ6XPR3 784 aa19.1■□□□□ 0.65
SMC4-221ENST00000489573 LINGO2Q7L985 606 aa19.1■□□□□ 0.65
SMC4-221ENST00000489573 ZNF679Q8IYX0 411 aa19.1■□□□□ 0.65
SMC4-221ENST00000489573 TEX19Q8NA77 164 aa19.1■□□□□ 0.65
SMC4-221ENST00000489573 ST7LQ8TDW4 575 aa19.1■□□□□ 0.65
SMC4-221ENST00000489573 HTRA1Q92743 480 aa19.1■□□□□ 0.65
SMC4-221ENST00000489573 WNT2BQ93097 391 aa19.1■□□□□ 0.65
SMC4-221ENST00000489573 NABP1Q96AH0 204 aa19.1■□□□□ 0.65
SMC4-221ENST00000489573 ZNF837Q96EG3 531 aaPredicted RBP19.1■□□□□ 0.65
SMC4-221ENST00000489573 CHCHD6Q9BRQ6 235 aa19.1■□□□□ 0.65
SMC4-221ENST00000489573 ST6GALNAC2Q9UJ37 374 aa19.1■□□□□ 0.65
SMC4-221ENST00000489573 SF3B6Q9Y3B4 125 aaKnown RBP19.1■□□□□ 0.65
SMC4-221ENST00000489573 LHFPL6Q9Y693 200 aa19.1■□□□□ 0.65
SMC4-221ENST00000489573 CACNA1GO43497 2377 aa19.09■□□□□ 0.65
SMC4-221ENST00000489573 LOC100506127A0A0U1RQW1 187 aa19.09■□□□□ 0.65
SMC4-221ENST00000489573 TRIM64BA6NI03 449 aa19.09■□□□□ 0.65
SMC4-221ENST00000489573 SLC22A1O15245 554 aa19.09■□□□□ 0.65
SMC4-221ENST00000489573 PSMB10P40306 273 aa19.09■□□□□ 0.65
SMC4-221ENST00000489573 TGM4P49221 684 aa19.09■□□□□ 0.65
SMC4-221ENST00000489573 SIRPAP78324 504 aa19.09■□□□□ 0.65
SMC4-221ENST00000489573 ROR2Q01974 943 aaKnown RBP19.09■□□□□ 0.65
SMC4-221ENST00000489573 CEACAM16Q2WEN9 425 aa19.09■□□□□ 0.65
SMC4-221ENST00000489573 CCDC58Q4VC31 144 aa19.09■□□□□ 0.65
SMC4-221ENST00000489573 LIPNQ5VXI9 398 aa19.09■□□□□ 0.65
SMC4-221ENST00000489573 ZNF585AQ6P3V2 769 aa19.09■□□□□ 0.65
SMC4-221ENST00000489573 CORO6Q6QEF8 472 aa19.09■□□□□ 0.65
SMC4-221ENST00000489573 ARL9Q6T311 187 aa19.09■□□□□ 0.65
SMC4-221ENST00000489573 LRRN1Q6UXK5 716 aa19.09■□□□□ 0.65
SMC4-221ENST00000489573 NUFIP2Q7Z417 695 aaKnown RBP19.09■□□□□ 0.65
SMC4-221ENST00000489573 KRT77Q7Z794 578 aa19.09■□□□□ 0.65
SMC4-221ENST00000489573 ZNF100Q8IYN0 542 aa19.09■□□□□ 0.65
SMC4-221ENST00000489573 OR2AJ1Q8NGZ0 328 aa19.09■□□□□ 0.65
SMC4-221ENST00000489573 MROQ9BYG7 248 aa19.09■□□□□ 0.65
SMC4-221ENST00000489573 C1orf198Q9H425 327 aa19.09■□□□□ 0.65
SMC4-221ENST00000489573 ELOVL3Q9HB03 270 aa19.09■□□□□ 0.65
SMC4-221ENST00000489573 SLC7A10Q9NS82 523 aa19.09■□□□□ 0.65
SMC4-221ENST00000489573 ANKRD11Q6UB99 2663 aaPredicted RBP19.08■□□□□ 0.65
SMC4-221ENST00000489573 OGG1O15527 345 aa19.08■□□□□ 0.65
SMC4-221ENST00000489573 PLPP2O43688 288 aa19.08■□□□□ 0.65
SMC4-221ENST00000489573 GPX5O75715 221 aa19.08■□□□□ 0.65
SMC4-221ENST00000489573 WNT11O96014 354 aa19.08■□□□□ 0.65
SMC4-221ENST00000489573 CD53P19397 219 aa19.08■□□□□ 0.65
SMC4-221ENST00000489573 NPR2P20594 1047 aa19.08■□□□□ 0.65
SMC4-221ENST00000489573 VBP1P61758 197 aa19.08■□□□□ 0.65
SMC4-221ENST00000489573 NCS1P62166 190 aa19.08■□□□□ 0.65
SMC4-221ENST00000489573 CDK5R1Q15078 307 aa19.08■□□□□ 0.65
SMC4-221ENST00000489573 STK11Q15831 433 aa19.08■□□□□ 0.65
SMC4-221ENST00000489573 DMKNQ6E0U4 476 aaPredicted RBP19.08■□□□□ 0.65
SMC4-221ENST00000489573 RPL22L1Q6P5R6 122 aaKnown RBP19.08■□□□□ 0.65
SMC4-221ENST00000489573 GDPGP1Q6ZNW5 385 aa19.08■□□□□ 0.65
SMC4-221ENST00000489573 SPATC1Q76KD6 591 aa19.08■□□□□ 0.65
SMC4-221ENST00000489573 TMEM203Q969S6 136 aa19.08■□□□□ 0.65
SMC4-221ENST00000489573 EXOSC4Q9NPD3 245 aaKnown RBP19.08■□□□□ 0.65
SMC4-221ENST00000489573 TMEM38BQ9NVV0 291 aa19.08■□□□□ 0.65
SMC4-221ENST00000489573 GDF2Q9UK05 429 aaPredicted RBP19.08■□□□□ 0.65
SMC4-221ENST00000489573 CD8B2A6NJW9 211 aa19.07■□□□□ 0.64
SMC4-221ENST00000489573 LRRTM2O43300 516 aa19.07■□□□□ 0.64
SMC4-221ENST00000489573 RPP14O95059 124 aaKnown RBP19.07■□□□□ 0.64
SMC4-221ENST00000489573 IGHV3-9P01782 118 aa19.07■□□□□ 0.64
SMC4-221ENST00000489573 GABRA1P14867 456 aa19.07■□□□□ 0.64
SMC4-221ENST00000489573 CRYBB2P43320 205 aa19.07■□□□□ 0.64
SMC4-221ENST00000489573 TDGF1P3P51864 188 aa19.07■□□□□ 0.64
SMC4-221ENST00000489573 SPCS2Q15005 226 aa19.07■□□□□ 0.64
SMC4-221ENST00000489573 NSUN5P2Q63ZY6 315 aa19.07■□□□□ 0.64
SMC4-221ENST00000489573 SMIM19Q96E16 107 aa19.07■□□□□ 0.64
SMC4-221ENST00000489573 MAP6Q96JE9 813 aa19.07■□□□□ 0.64
SMC4-221ENST00000489573 FOXB1Q99853 325 aa19.07■□□□□ 0.64
SMC4-221ENST00000489573 TMED9Q9BVK6 235 aa19.07■□□□□ 0.64
SMC4-221ENST00000489573 ZNF416Q9BWM5 594 aa19.07■□□□□ 0.64
SMC4-221ENST00000489573 PTTG2Q9NZH5 202 aa19.07■□□□□ 0.64
SMC4-221ENST00000489573 ASH2LQ9UBL3 628 aa19.07■□□□□ 0.64
SMC4-221ENST00000489573 SSR3Q9UNL2 185 aa19.07■□□□□ 0.64
SMC4-221ENST00000489573 A0A1W2PPW3 197 aa19.06■□□□□ 0.64
SMC4-221ENST00000489573 ZNF587BE7ETH6 402 aa19.06■□□□□ 0.64
SMC4-221ENST00000489573 RPL36A-HNRNPH2H7BZ11 118 aa19.06■□□□□ 0.64
SMC4-221ENST00000489573 WDR1O75083 606 aa19.06■□□□□ 0.64
SMC4-221ENST00000489573 TPOP07202 933 aa19.06■□□□□ 0.64
SMC4-221ENST00000489573 PTGER4P35408 488 aa19.06■□□□□ 0.64
SMC4-221ENST00000489573 RIDAP52758 137 aaKnown RBP19.06■□□□□ 0.64
SMC4-221ENST00000489573 ENDOGQ14249 297 aaKnown RBP19.06■□□□□ 0.64
SMC4-221ENST00000489573 ALDH16A1Q8IZ83 802 aa19.06■□□□□ 0.64
SMC4-221ENST00000489573 C9orf106Q8NAJ2 232 aa19.06■□□□□ 0.64
SMC4-221ENST00000489573 RNF133Q8WVZ7 376 aa19.06■□□□□ 0.64
SMC4-221ENST00000489573 RNF166Q96A37 237 aaPredicted RBP19.06■□□□□ 0.64
SMC4-221ENST00000489573 SLAMF6Q96DU3 332 aa19.06■□□□□ 0.64
SMC4-221ENST00000489573 TM9SF2Q99805 663 aa19.06■□□□□ 0.64
SMC4-221ENST00000489573 SLX1AQ9BQ83 275 aa19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms