RNA–Protein interactions for RNA: ENST00000489142.5

VTI1A-206, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-206	ENST00000489142	NDUFB2	O95178	105 aa		11.98	□□□□□ -0.49
VTI1A-206	ENST00000489142	MPZL1	O95297	269 aa		11.98	□□□□□ -0.49
VTI1A-206	ENST00000489142	TGFA	P01135	160 aa		11.98	□□□□□ -0.49
VTI1A-206	ENST00000489142	SEMG1	P04279	462 aa		11.98	□□□□□ -0.49
VTI1A-206	ENST00000489142	CST2	P09228	141 aa		11.98	□□□□□ -0.49
VTI1A-206	ENST00000489142	HSD17B1	P14061	328 aa		11.98	□□□□□ -0.49
VTI1A-206	ENST00000489142	MSR1	P21757	451 aa		11.98	□□□□□ -0.49
VTI1A-206	ENST00000489142	GUCA1A	P43080	201 aa	Predicted RBP	11.98	□□□□□ -0.49
VTI1A-206	ENST00000489142	CHN2	P52757	468 aa		11.98	□□□□□ -0.49
VTI1A-206	ENST00000489142	CCL8	P80075	99 aa		11.98	□□□□□ -0.49
VTI1A-206	ENST00000489142	HNRNPA0	Q13151	305 aa	Known RBP	11.98	□□□□□ -0.49
VTI1A-206	ENST00000489142	KRT72	Q14CN4	511 aa		11.98	□□□□□ -0.49
VTI1A-206	ENST00000489142	TST	Q16762	297 aa	Known RBP	11.98	□□□□□ -0.49
VTI1A-206	ENST00000489142	PIGW	Q7Z7B1	504 aa		11.98	□□□□□ -0.49
VTI1A-206	ENST00000489142	DEFB107A	Q8IZN7	70 aa		11.98	□□□□□ -0.49
VTI1A-206	ENST00000489142	ABHD4	Q8TB40	342 aa		11.98	□□□□□ -0.49
VTI1A-206	ENST00000489142	SNX33	Q8WV41	574 aa		11.98	□□□□□ -0.49
VTI1A-206	ENST00000489142	IPCEF1	Q8WWN9	437 aa	Predicted RBP	11.98	□□□□□ -0.49
VTI1A-206	ENST00000489142	PYURF	Q96I23	114 aa		11.98	□□□□□ -0.49
VTI1A-206	ENST00000489142	LRRC37B	Q96QE4	947 aa		11.98	□□□□□ -0.49
VTI1A-206	ENST00000489142	FUZ	Q9BT04	418 aa		11.98	□□□□□ -0.49
VTI1A-206	ENST00000489142	BCL2L14	Q9BZR8	327 aa		11.98	□□□□□ -0.49
VTI1A-206	ENST00000489142	SHARPIN	Q9H0F6	387 aa		11.98	□□□□□ -0.49
VTI1A-206	ENST00000489142	SYT4	Q9H2B2	425 aa		11.98	□□□□□ -0.49
VTI1A-206	ENST00000489142	GORASP2	Q9H8Y8	452 aa		11.98	□□□□□ -0.49
VTI1A-206	ENST00000489142	HINT3	Q9NQE9	182 aa	Known RBP	11.98	□□□□□ -0.49
VTI1A-206	ENST00000489142	ZNF275	Q9NSD4	429 aa	Predicted RBP	11.98	□□□□□ -0.49
VTI1A-206	ENST00000489142	CD300A	Q9UGN4	299 aa		11.98	□□□□□ -0.49
VTI1A-206	ENST00000489142	MAGEL2	Q9UJ55	1249 aa		11.98	□□□□□ -0.49
VTI1A-206	ENST00000489142	CDC42EP3	Q9UKI2	254 aa		11.98	□□□□□ -0.49
VTI1A-206	ENST00000489142	AURKC	Q9UQB9	309 aa		11.98	□□□□□ -0.49
VTI1A-206	ENST00000489142	IER3IP1	Q9Y5U9	82 aa		11.98	□□□□□ -0.49
VTI1A-206	ENST00000489142	ATR	Q13535	2644 aa		11.97	□□□□□ -0.49
VTI1A-206	ENST00000489142	IGLV3-9	A0A075B6K5	115 aa		11.97	□□□□□ -0.49
VTI1A-206	ENST00000489142	PRSS37	A4D1T9	235 aa		11.97	□□□□□ -0.49
VTI1A-206	ENST00000489142	C17orf100	A8MU93	164 aa		11.97	□□□□□ -0.49
VTI1A-206	ENST00000489142	SLC16A7	O60669	478 aa		11.97	□□□□□ -0.49
VTI1A-206	ENST00000489142	GADD45G	O95257	159 aa		11.97	□□□□□ -0.49
VTI1A-206	ENST00000489142	PPP1R3D	O95685	299 aa		11.97	□□□□□ -0.49
VTI1A-206	ENST00000489142	GPANK1	O95872	356 aa		11.97	□□□□□ -0.49
VTI1A-206	ENST00000489142	NGF	P01138	241 aa		11.97	□□□□□ -0.49
VTI1A-206	ENST00000489142	TACSTD2	P09758	323 aa		11.97	□□□□□ -0.49
VTI1A-206	ENST00000489142	SELENOV	P59797	346 aa		11.97	□□□□□ -0.49
VTI1A-206	ENST00000489142	SAMD4B	Q5PRF9	694 aa	Known RBP	11.97	□□□□□ -0.49
VTI1A-206	ENST00000489142	FAM120AOS	Q5T036	256 aa		11.97	□□□□□ -0.49
VTI1A-206	ENST00000489142	TMEM154	Q6P9G4	183 aa		11.97	□□□□□ -0.49
VTI1A-206	ENST00000489142	PTCHD4	Q6ZW05	846 aa		11.97	□□□□□ -0.49
VTI1A-206	ENST00000489142	ZSCAN2	Q7Z7L9	614 aa	Predicted RBP	11.97	□□□□□ -0.49
VTI1A-206	ENST00000489142	SLC25A40	Q8TBP6	338 aa		11.97	□□□□□ -0.49
VTI1A-206	ENST00000489142	FANK1	Q8TC84	345 aa		11.97	□□□□□ -0.49
VTI1A-206	ENST00000489142	FNDC8	Q8TC99	324 aa		11.97	□□□□□ -0.49
VTI1A-206	ENST00000489142	RDH5	Q92781	318 aa		11.97	□□□□□ -0.49
VTI1A-206	ENST00000489142	DHRS1	Q96LJ7	313 aa		11.97	□□□□□ -0.49
VTI1A-206	ENST00000489142	NSMCE2	Q96MF7	247 aa		11.97	□□□□□ -0.49
VTI1A-206	ENST00000489142	OR2J1	Q9GZK6	312 aa		11.97	□□□□□ -0.49
VTI1A-206	ENST00000489142	EIF3K	Q9UBQ5	218 aa	Known RBP	11.97	□□□□□ -0.49
VTI1A-206	ENST00000489142	TIMM10B	Q9Y5J6	103 aa		11.97	□□□□□ -0.49
VTI1A-206	ENST00000489142	C12orf71	A8MTZ7	269 aa		11.96	□□□□□ -0.49
VTI1A-206	ENST00000489142	TPD52L2	O43399	206 aa	Known RBP	11.96	□□□□□ -0.49
VTI1A-206	ENST00000489142	PPIH	O43447	177 aa	Known RBP	11.96	□□□□□ -0.49
VTI1A-206	ENST00000489142	DOK2	O60496	412 aa		11.96	□□□□□ -0.49
VTI1A-206	ENST00000489142	DCTN3	O75935	186 aa		11.96	□□□□□ -0.49
VTI1A-206	ENST00000489142	FAM157C	P0CG43	387 aa		11.96	□□□□□ -0.49
VTI1A-206	ENST00000489142	ACHE	P22303	614 aa		11.96	□□□□□ -0.49
VTI1A-206	ENST00000489142	SDHA	P31040	664 aa		11.96	□□□□□ -0.49
VTI1A-206	ENST00000489142	RRM2	P31350	389 aa		11.96	□□□□□ -0.49
VTI1A-206	ENST00000489142	RBMX	P38159	391 aa	Known RBP	11.96	□□□□□ -0.49
VTI1A-206	ENST00000489142	GPR6	P46095	362 aa	Predicted RBP	11.96	□□□□□ -0.49
VTI1A-206	ENST00000489142	SRSF2	Q01130	221 aa	Known RBP	11.96	□□□□□ -0.49
VTI1A-206	ENST00000489142	CYP2R1	Q6VVX0	501 aa		11.96	□□□□□ -0.49
VTI1A-206	ENST00000489142	SLC7A6	Q92536	515 aa		11.96	□□□□□ -0.49
VTI1A-206	ENST00000489142	MARS2	Q96GW9	593 aa	Known RBP	11.96	□□□□□ -0.49
VTI1A-206	ENST00000489142	TSSK2	Q96PF2	358 aa		11.96	□□□□□ -0.49
VTI1A-206	ENST00000489142	NDEL1	Q9GZM8	345 aa		11.96	□□□□□ -0.49
VTI1A-206	ENST00000489142	POFUT1	Q9H488	388 aa		11.96	□□□□□ -0.49
VTI1A-206	ENST00000489142	NRIP3	Q9NQ35	241 aa		11.96	□□□□□ -0.49
VTI1A-206	ENST00000489142	TMEM160	Q9NX00	188 aa		11.96	□□□□□ -0.49
VTI1A-206	ENST00000489142	SLCO1C1	Q9NYB5	712 aa		11.96	□□□□□ -0.49
VTI1A-206	ENST00000489142	TREM2	Q9NZC2	230 aa		11.96	□□□□□ -0.49
VTI1A-206	ENST00000489142	COA3	Q9Y2R0	106 aa	Predicted RBP	11.96	□□□□□ -0.49
VTI1A-206	ENST00000489142	CACNG2	Q9Y698	323 aa		11.96	□□□□□ -0.49
VTI1A-206	ENST00000489142	MXRA5	Q9NR99	2828 aa		11.96	□□□□□ -0.5
VTI1A-206	ENST00000489142	SPRY3	O43610	288 aa		11.95	□□□□□ -0.5
VTI1A-206	ENST00000489142	RP2	O75695	350 aa		11.95	□□□□□ -0.5
VTI1A-206	ENST00000489142	IGHV3-13	P01766	116 aa		11.95	□□□□□ -0.5
VTI1A-206	ENST00000489142	FABP3	P05413	133 aa		11.95	□□□□□ -0.5
VTI1A-206	ENST00000489142	ITGA2	P17301	1181 aa		11.95	□□□□□ -0.5
VTI1A-206	ENST00000489142	ATP6V1B2	P21281	511 aa		11.95	□□□□□ -0.5
VTI1A-206	ENST00000489142	GCH1	P30793	250 aa		11.95	□□□□□ -0.5
VTI1A-206	ENST00000489142	CDKN2A	P42771	156 aa	Known RBP	11.95	□□□□□ -0.5
VTI1A-206	ENST00000489142	HTR5A	P47898	357 aa		11.95	□□□□□ -0.5
VTI1A-206	ENST00000489142	CENPA	P49450	140 aa		11.95	□□□□□ -0.5
VTI1A-206	ENST00000489142	PCBD1	P61457	104 aa		11.95	□□□□□ -0.5
VTI1A-206	ENST00000489142	PPP1CB	P62140	327 aa		11.95	□□□□□ -0.5
VTI1A-206	ENST00000489142	MEP1B	Q16820	701 aa		11.95	□□□□□ -0.5
VTI1A-206	ENST00000489142	CR1L	Q2VPA4	569 aa		11.95	□□□□□ -0.5
VTI1A-206	ENST00000489142	ZNF718	Q3SXZ3	478 aa		11.95	□□□□□ -0.5
VTI1A-206	ENST00000489142	AVPI1	Q5T686	147 aa		11.95	□□□□□ -0.5
VTI1A-206	ENST00000489142	SMARCD3	Q6STE5	483 aa		11.95	□□□□□ -0.5
VTI1A-206	ENST00000489142	C16orf89	Q6UX73	402 aa		11.95	□□□□□ -0.5

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