RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 CCNOP22674 350 aa12.75□□□□□ -0.37
USP4-212ENST00000486549 NR4A1P22736 598 aa12.75□□□□□ -0.37
USP4-212ENST00000486549 POU1F1P28069 291 aa12.75□□□□□ -0.37
USP4-212ENST00000486549 SERPINF1P36955 418 aa12.75□□□□□ -0.37
USP4-212ENST00000486549 ARHGDIAP52565 204 aa12.75□□□□□ -0.37
USP4-212ENST00000486549 PCBD1P61457 104 aa12.75□□□□□ -0.37
USP4-212ENST00000486549 PSG4Q00888 419 aa12.75□□□□□ -0.37
USP4-212ENST00000486549 ADIPOQQ15848 244 aa12.75□□□□□ -0.37
USP4-212ENST00000486549 PAQR4Q8N4S7 273 aaPredicted RBP12.75□□□□□ -0.37
USP4-212ENST00000486549 IQCF1Q8N6M8 205 aa12.75□□□□□ -0.37
USP4-212ENST00000486549 CYB561A3Q8NBI2 242 aa12.75□□□□□ -0.37
USP4-212ENST00000486549 CPEB3Q8NE35 698 aaKnown RBP12.75□□□□□ -0.37
USP4-212ENST00000486549 OR2T33Q8NG76 320 aa12.75□□□□□ -0.37
USP4-212ENST00000486549 OR1J2Q8NGS2 313 aa12.75□□□□□ -0.37
USP4-212ENST00000486549 OR4Q3Q8NH05 313 aa12.75□□□□□ -0.37
USP4-212ENST00000486549 C18orf12Q96KH6 178 aa12.75□□□□□ -0.37
USP4-212ENST00000486549 BDH2Q9BUT1 245 aa12.75□□□□□ -0.37
USP4-212ENST00000486549 WNT5BQ9H1J7 359 aa12.75□□□□□ -0.37
USP4-212ENST00000486549 C1orf198Q9H425 327 aa12.75□□□□□ -0.37
USP4-212ENST00000486549 ZNF556Q9HAH1 456 aa12.75□□□□□ -0.37
USP4-212ENST00000486549 NTN4Q9HB63 628 aa12.75□□□□□ -0.37
USP4-212ENST00000486549 DLL4Q9NR61 685 aa12.75□□□□□ -0.37
USP4-212ENST00000486549 KIF17Q9P2E2 1029 aa12.75□□□□□ -0.37
USP4-212ENST00000486549 GDF2Q9UK05 429 aaPredicted RBP12.75□□□□□ -0.37
USP4-212ENST00000486549 B9D1Q9UPM9 204 aa12.75□□□□□ -0.37
USP4-212ENST00000486549 POLR1DQ9Y2S0 133 aa12.75□□□□□ -0.37
USP4-212ENST00000486549 AP4S1Q9Y587 144 aa12.75□□□□□ -0.37
USP4-212ENST00000486549 TIMM10BQ9Y5J6 103 aa12.75□□□□□ -0.37
USP4-212ENST00000486549 FLNAP21333 2647 aaKnown RBP12.74□□□□□ -0.37
USP4-212ENST00000486549 IGLV1-36A0A0B4J1U3 117 aa12.74□□□□□ -0.37
USP4-212ENST00000486549 PAX1P15863 534 aa12.74□□□□□ -0.37
USP4-212ENST00000486549 STOMP27105 288 aa12.74□□□□□ -0.37
USP4-212ENST00000486549 SNRPD2P62316 118 aaKnown RBP12.74□□□□□ -0.37
USP4-212ENST00000486549 COX10Q12887 443 aa12.74□□□□□ -0.37
USP4-212ENST00000486549 ATP6AP1Q15904 470 aa12.74□□□□□ -0.37
USP4-212ENST00000486549 MEP1BQ16820 701 aa12.74□□□□□ -0.37
USP4-212ENST00000486549 ZNF774Q6NX45 483 aa12.74□□□□□ -0.37
USP4-212ENST00000486549 SHQ1Q6PI26 577 aaKnown RBP12.74□□□□□ -0.37
USP4-212ENST00000486549 CD300LDQ6UXZ3 194 aa12.74□□□□□ -0.37
USP4-212ENST00000486549 OR6V1Q8N148 313 aa12.74□□□□□ -0.37
USP4-212ENST00000486549 LNX2Q8N448 690 aa12.74□□□□□ -0.37
USP4-212ENST00000486549 ATG16L2Q8NAA4 619 aa12.74□□□□□ -0.37
USP4-212ENST00000486549 ICA1LQ8NDH6 482 aa12.74□□□□□ -0.37
USP4-212ENST00000486549 C11orf40Q8WZ69 217 aa12.74□□□□□ -0.37
USP4-212ENST00000486549 SNX18Q96RF0 628 aa12.74□□□□□ -0.37
USP4-212ENST00000486549 GRIP2Q9C0E4 1043 aa12.74□□□□□ -0.37
USP4-212ENST00000486549 RACGAP1Q9H0H5 632 aa12.74□□□□□ -0.37
USP4-212ENST00000486549 ZNF442Q9H7R0 627 aa12.74□□□□□ -0.37
USP4-212ENST00000486549 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.74□□□□□ -0.37
USP4-212ENST00000486549 REV1Q9UBZ9 1251 aa12.74□□□□□ -0.37
USP4-212ENST00000486549 FZR1Q9UM11 496 aa12.74□□□□□ -0.37
USP4-212ENST00000486549 BAIAP2Q9UQB8 552 aa12.74□□□□□ -0.37
USP4-212ENST00000486549 ARFGEF3Q5TH69 2177 aa12.73□□□□□ -0.37
USP4-212ENST00000486549 C5orf49A4QMS7 147 aa12.73□□□□□ -0.37
USP4-212ENST00000486549 VSTM5A8MXK1 200 aa12.73□□□□□ -0.37
USP4-212ENST00000486549 B9A039 149 aa12.73□□□□□ -0.37
USP4-212ENST00000486549 IGHV4-39P01824 125 aa12.73□□□□□ -0.37
USP4-212ENST00000486549 HLA-DQA2P01906 255 aa12.73□□□□□ -0.37
USP4-212ENST00000486549 GAAP10253 952 aa12.73□□□□□ -0.37
USP4-212ENST00000486549 BMP4P12644 408 aa12.73□□□□□ -0.37
USP4-212ENST00000486549 ANXA8P13928 327 aa12.73□□□□□ -0.37
USP4-212ENST00000486549 FASP25445 335 aa12.73□□□□□ -0.37
USP4-212ENST00000486549 GDI2P50395 445 aaKnown RBP12.73□□□□□ -0.37
USP4-212ENST00000486549 RPS23P62266 143 aaKnown RBP12.73□□□□□ -0.37
USP4-212ENST00000486549 SCRN3Q0VDG4 424 aa12.73□□□□□ -0.37
USP4-212ENST00000486549 SWI5Q1ZZU3 235 aa12.73□□□□□ -0.37
USP4-212ENST00000486549 MST1LQ2TV78 715 aa12.73□□□□□ -0.37
USP4-212ENST00000486549 AMIGO2Q86SJ2 522 aa12.73□□□□□ -0.37
USP4-212ENST00000486549 ALDH16A1Q8IZ83 802 aa12.73□□□□□ -0.37
USP4-212ENST00000486549 SVOPLQ8N434 492 aa12.73□□□□□ -0.37
USP4-212ENST00000486549 SLC37A3Q8NCC5 494 aa12.73□□□□□ -0.37
USP4-212ENST00000486549 NPEPL1Q8NDH3 523 aa12.73□□□□□ -0.37
USP4-212ENST00000486549 PROKR2Q8NFJ6 384 aa12.73□□□□□ -0.37
USP4-212ENST00000486549 OR10H5Q8NGA6 315 aa12.73□□□□□ -0.37
USP4-212ENST00000486549 OR9Q1Q8NGQ5 310 aa12.73□□□□□ -0.37
USP4-212ENST00000486549 OR5K1Q8NHB7 308 aa12.73□□□□□ -0.37
USP4-212ENST00000486549 LRTOMTQ8WZ04 291 aa12.73□□□□□ -0.37
USP4-212ENST00000486549 Q96MF0 132 aa12.73□□□□□ -0.37
USP4-212ENST00000486549 PLK3Q9H4B4 646 aa12.73□□□□□ -0.37
USP4-212ENST00000486549 ASH2LQ9UBL3 628 aa12.73□□□□□ -0.37
USP4-212ENST00000486549 KLHL21Q9UJP4 597 aa12.73□□□□□ -0.37
USP4-212ENST00000486549 CMAHPQ9Y471 501 aa12.73□□□□□ -0.37
USP4-212ENST00000486549 FKBP7Q9Y680 259 aa12.73□□□□□ -0.37
USP4-212ENST00000486549 PMF1-BGLAPU3KQ54 211 aa12.73□□□□□ -0.37
USP4-212ENST00000486549 MTORP42345 2549 aa12.73□□□□□ -0.37
USP4-212ENST00000486549 RTTNQ86VV8 2226 aa12.73□□□□□ -0.37
USP4-212ENST00000486549 VPS13CQ709C8 3753 aa12.73□□□□□ -0.37
USP4-212ENST00000486549 LOC100509620A0A075B734 347 aa12.72□□□□□ -0.37
USP4-212ENST00000486549 RIIAD1A6NNX1 92 aa12.72□□□□□ -0.37
USP4-212ENST00000486549 DOK2O60496 412 aa12.72□□□□□ -0.37
USP4-212ENST00000486549 SNAP29O95721 258 aa12.72□□□□□ -0.37
USP4-212ENST00000486549 IFNGP01579 166 aa12.72□□□□□ -0.37
USP4-212ENST00000486549 LCKP06239 509 aa12.72□□□□□ -0.37
USP4-212ENST00000486549 INHBBP09529 407 aa12.72□□□□□ -0.37
USP4-212ENST00000486549 FCGR1AP12314 374 aa12.72□□□□□ -0.37
USP4-212ENST00000486549 PYCR1P32322 319 aa12.72□□□□□ -0.37
USP4-212ENST00000486549 GLRXP35754 106 aa12.72□□□□□ -0.37
USP4-212ENST00000486549 ERVS71-1P61550 626 aa12.72□□□□□ -0.37
USP4-212ENST00000486549 LSM6P62312 80 aaKnown RBP12.72□□□□□ -0.37
USP4-212ENST00000486549 GLO1Q04760 184 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms