RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 CD79AP11912 226 aa10.7□□□□□ -0.7
SDC1-206ENST00000482879 CCKARP32238 428 aa10.7□□□□□ -0.7
SDC1-206ENST00000482879 NAA10P41227 235 aaPredicted RBP10.7□□□□□ -0.7
SDC1-206ENST00000482879 PCBD1P61457 104 aa10.7□□□□□ -0.7
SDC1-206ENST00000482879 ZNF91Q05481 1191 aa10.7□□□□□ -0.7
SDC1-206ENST00000482879 PIGFQ07326 219 aa10.7□□□□□ -0.7
SDC1-206ENST00000482879 POU4F2Q12837 409 aa10.7□□□□□ -0.7
SDC1-206ENST00000482879 GGTLC2Q14390 218 aa10.7□□□□□ -0.7
SDC1-206ENST00000482879 SLC36A2Q495M3 483 aa10.7□□□□□ -0.7
SDC1-206ENST00000482879 TIMM23BQ5SRD1 257 aa10.7□□□□□ -0.7
SDC1-206ENST00000482879 CORO6Q6QEF8 472 aa10.7□□□□□ -0.7
SDC1-206ENST00000482879 SLC16A9Q7RTY1 509 aa10.7□□□□□ -0.7
SDC1-206ENST00000482879 DPPA2Q7Z7J5 298 aa10.7□□□□□ -0.7
SDC1-206ENST00000482879 P2RY8Q86VZ1 359 aa10.7□□□□□ -0.7
SDC1-206ENST00000482879 LINC00346Q8IVM7 164 aa10.7□□□□□ -0.7
SDC1-206ENST00000482879 OR2AJ1Q8NGZ0 328 aa10.7□□□□□ -0.7
SDC1-206ENST00000482879 OR52N5Q8NH56 324 aa10.7□□□□□ -0.7
SDC1-206ENST00000482879 FGFBP3Q8TAT2 258 aa10.7□□□□□ -0.7
SDC1-206ENST00000482879 NANOS1Q8WY41 292 aaKnown RBP10.7□□□□□ -0.7
SDC1-206ENST00000482879 MUCL1Q96DR8 90 aa10.7□□□□□ -0.7
SDC1-206ENST00000482879 FBXO17Q96EF6 278 aa10.7□□□□□ -0.7
SDC1-206ENST00000482879 CNN2Q99439 309 aaKnown RBP10.7□□□□□ -0.7
SDC1-206ENST00000482879 OR10A4Q9H209 315 aa10.7□□□□□ -0.7
SDC1-206ENST00000482879 ADGRL4Q9HBW9 690 aa10.7□□□□□ -0.7
SDC1-206ENST00000482879 CCNB1IP1Q9NPC3 277 aa10.7□□□□□ -0.7
SDC1-206ENST00000482879 UBAP1Q9NZ09 502 aa10.7□□□□□ -0.7
SDC1-206ENST00000482879 KCNG2Q9UJ96 466 aa10.7□□□□□ -0.7
SDC1-206ENST00000482879 PCDHGB5Q9Y5G0 923 aa10.7□□□□□ -0.7
SDC1-206ENST00000482879 CADP27708 2225 aa10.69□□□□□ -0.7
SDC1-206ENST00000482879 HELZ2Q9BYK8 2649 aaKnown RBP10.69□□□□□ -0.7
SDC1-206ENST00000482879 ARPC4-TTLL3A0A0A6YYG9 625 aa10.69□□□□□ -0.7
SDC1-206ENST00000482879 CLEC18AA5D8T8 446 aa10.69□□□□□ -0.7
SDC1-206ENST00000482879 XPNPEP2O43895 674 aa10.69□□□□□ -0.7
SDC1-206ENST00000482879 FAM20BO75063 409 aa10.69□□□□□ -0.7
SDC1-206ENST00000482879 UBL3O95164 117 aa10.69□□□□□ -0.7
SDC1-206ENST00000482879 WNT11O96014 354 aa10.69□□□□□ -0.7
SDC1-206ENST00000482879 SBK2P0C263 348 aa10.69□□□□□ -0.7
SDC1-206ENST00000482879 PPP3CBP16298 524 aa10.69□□□□□ -0.7
SDC1-206ENST00000482879 ZNF32P17041 273 aa10.69□□□□□ -0.7
SDC1-206ENST00000482879 RPS27P42677 84 aaKnown RBP10.69□□□□□ -0.7
SDC1-206ENST00000482879 HCCSP53701 268 aa10.69□□□□□ -0.7
SDC1-206ENST00000482879 CXCR4P61073 352 aa10.69□□□□□ -0.7
SDC1-206ENST00000482879 CSNK2BP67870 215 aa10.69□□□□□ -0.7
SDC1-206ENST00000482879 SORDQ00796 357 aa10.69□□□□□ -0.7
SDC1-206ENST00000482879 AQP6Q13520 282 aa10.69□□□□□ -0.7
SDC1-206ENST00000482879 SNTB1Q13884 538 aaKnown RBP10.69□□□□□ -0.7
SDC1-206ENST00000482879 TAB1Q15750 504 aa10.69□□□□□ -0.7
SDC1-206ENST00000482879 KLHL22Q53GT1 634 aa10.69□□□□□ -0.7
SDC1-206ENST00000482879 TEX30Q5JUR7 227 aa10.69□□□□□ -0.7
SDC1-206ENST00000482879 ALKBH2Q6NS38 261 aa10.69□□□□□ -0.7
SDC1-206ENST00000482879 TMEM53Q6P2H8 277 aa10.69□□□□□ -0.7
SDC1-206ENST00000482879 CLEC18BQ6UXF7 455 aa10.69□□□□□ -0.7
SDC1-206ENST00000482879 SHFQ7M4L6 423 aa10.69□□□□□ -0.7
SDC1-206ENST00000482879 DPY19L4Q7Z388 723 aa10.69□□□□□ -0.7
SDC1-206ENST00000482879 SYT9Q86SS6 491 aa10.69□□□□□ -0.7
SDC1-206ENST00000482879 ZNF786Q8N393 782 aa10.69□□□□□ -0.7
SDC1-206ENST00000482879 CLEC18CQ8NCF0 446 aa10.69□□□□□ -0.7
SDC1-206ENST00000482879 OR4F15Q8NGB8 312 aa10.69□□□□□ -0.7
SDC1-206ENST00000482879 SMAP2Q8WU79 429 aaPredicted RBP10.69□□□□□ -0.7
SDC1-206ENST00000482879 HSD17B8Q92506 261 aa10.69□□□□□ -0.7
SDC1-206ENST00000482879 LGALS12Q96DT0 336 aa10.69□□□□□ -0.7
SDC1-206ENST00000482879 WACQ9BTA9 647 aa10.69□□□□□ -0.7
SDC1-206ENST00000482879 YIPF3Q9GZM5 350 aa10.69□□□□□ -0.7
SDC1-206ENST00000482879 OBP2BQ9NPH6 170 aa10.69□□□□□ -0.7
SDC1-206ENST00000482879 NPDC1Q9NQX5 325 aaPredicted RBP10.69□□□□□ -0.7
SDC1-206ENST00000482879 PLCXD1Q9NUJ7 323 aa10.69□□□□□ -0.7
SDC1-206ENST00000482879 SCN3BQ9NY72 215 aa10.69□□□□□ -0.7
SDC1-206ENST00000482879 ZNF224Q9NZL3 707 aa10.69□□□□□ -0.7
SDC1-206ENST00000482879 ASH2LQ9UBL3 628 aa10.69□□□□□ -0.7
SDC1-206ENST00000482879 NDRG3Q9UGV2 375 aa10.69□□□□□ -0.7
SDC1-206ENST00000482879 CYB5R1Q9UHQ9 305 aa10.69□□□□□ -0.7
SDC1-206ENST00000482879 AMDHD2Q9Y303 409 aa10.69□□□□□ -0.7
SDC1-206ENST00000482879 TIMM10BQ9Y5J6 103 aa10.69□□□□□ -0.7
SDC1-206ENST00000482879 LHFPL6Q9Y693 200 aa10.69□□□□□ -0.7
SDC1-206ENST00000482879 ICE1Q9Y2F5 2266 aa10.69□□□□□ -0.7
SDC1-206ENST00000482879 LRRK2Q5S007 2527 aa10.68□□□□□ -0.7
SDC1-206ENST00000482879 ZNF503-AS2A6NEH8 195 aa10.68□□□□□ -0.7
SDC1-206ENST00000482879 SLC1A7O00341 560 aa10.68□□□□□ -0.7
SDC1-206ENST00000482879 MMP7P09237 267 aaPredicted RBP10.68□□□□□ -0.7
SDC1-206ENST00000482879 PSKH1P11801 424 aa10.68□□□□□ -0.7
SDC1-206ENST00000482879 ARR3P36575 388 aa10.68□□□□□ -0.7
SDC1-206ENST00000482879 SLC15A1P46059 708 aa10.68□□□□□ -0.7
SDC1-206ENST00000482879 RAB1AP62820 205 aa10.68□□□□□ -0.7
SDC1-206ENST00000482879 RAB40BQ12829 278 aa10.68□□□□□ -0.7
SDC1-206ENST00000482879 EIF2B1Q14232 305 aaKnown RBP10.68□□□□□ -0.7
SDC1-206ENST00000482879 PPA1Q15181 289 aa10.68□□□□□ -0.7
SDC1-206ENST00000482879 PCK2Q16822 640 aa10.68□□□□□ -0.7
SDC1-206ENST00000482879 GSG1Q2KHT4 349 aa10.68□□□□□ -0.7
SDC1-206ENST00000482879 SLC18B1Q6NT16 456 aa10.68□□□□□ -0.7
SDC1-206ENST00000482879 TMEM154Q6P9G4 183 aa10.68□□□□□ -0.7
SDC1-206ENST00000482879 MDP1Q86V88 176 aa10.68□□□□□ -0.7
SDC1-206ENST00000482879 CDC20BQ86Y33 519 aa10.68□□□□□ -0.7
SDC1-206ENST00000482879 SLC35F2Q8IXU6 374 aa10.68□□□□□ -0.7
SDC1-206ENST00000482879 GJC3Q8NFK1 279 aa10.68□□□□□ -0.7
SDC1-206ENST00000482879 OR10H4Q8NGA5 316 aa10.68□□□□□ -0.7
SDC1-206ENST00000482879 LINC01560Q8TB33 94 aa10.68□□□□□ -0.7
SDC1-206ENST00000482879 THEM6Q8WUY1 208 aa10.68□□□□□ -0.7
SDC1-206ENST00000482879 GGHQ92820 318 aa10.68□□□□□ -0.7
SDC1-206ENST00000482879 ZC3HAV1LQ96H79 300 aaKnown RBP10.68□□□□□ -0.7
SDC1-206ENST00000482879 WFIKKN1Q96NZ8 548 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms