RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 SEMA7AO75326 666 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 LY86O95711 162 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 TNFP01375 233 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 PGCP20142 388 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 ALOX5APP20292 161 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 HOXC8P31273 242 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 ZP2Q05996 745 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 FABP9Q0Z7S8 132 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 PPA1Q15181 289 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 EOGTQ5NDL2 527 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 ZNF626Q68DY1 528 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 RNF165Q6ZSG1 346 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 EID2Q8N6I1 236 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 NDRG3Q9UGV2 375 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 MMP24Q9Y5R2 645 aa12.31□□□□□ -0.44
USP42-206ENST00000479544 CALCBP10092 127 aa12.3□□□□□ -0.44
USP42-206ENST00000479544 GNB3P16520 340 aa12.3□□□□□ -0.44
USP42-206ENST00000479544 UBE2KP61086 200 aa12.3□□□□□ -0.44
USP42-206ENST00000479544 HHEXQ03014 270 aa12.3□□□□□ -0.44
USP42-206ENST00000479544 GUCA2BQ16661 112 aa12.3□□□□□ -0.44
USP42-206ENST00000479544 CLEC12BQ2HXU8 276 aa12.3□□□□□ -0.44
USP42-206ENST00000479544 MED25Q71SY5 747 aa12.3□□□□□ -0.44
USP42-206ENST00000479544 RAB3CQ96E17 227 aa12.3□□□□□ -0.44
USP42-206ENST00000479544 PITHD1Q9GZP4 211 aaPredicted RBP12.3□□□□□ -0.44
USP42-206ENST00000479544 ZNF442Q9H7R0 627 aa12.3□□□□□ -0.44
USP42-206ENST00000479544 TBC1D29Q9UFV1 150 aa12.3□□□□□ -0.44
USP42-206ENST00000479544 RFPL4AA6NLU0 287 aa12.3□□□□□ -0.44
USP42-206ENST00000479544 RFPL4AL1F8VTS6 287 aa12.3□□□□□ -0.44
USP42-206ENST00000479544 LRP3O75074 770 aa12.3□□□□□ -0.44
USP42-206ENST00000479544 KLF8O95600 359 aaPredicted RBP12.3□□□□□ -0.44
USP42-206ENST00000479544 PNMTP11086 282 aa12.3□□□□□ -0.44
USP42-206ENST00000479544 DUSP8Q13202 625 aa12.3□□□□□ -0.44
USP42-206ENST00000479544 RUNX2Q13950 521 aa12.3□□□□□ -0.44
USP42-206ENST00000479544 PRAMEF8Q5VWM4 474 aa12.3□□□□□ -0.44
USP42-206ENST00000479544 PRAMEF7Q5VXH5 474 aa12.3□□□□□ -0.44
USP42-206ENST00000479544 PWWP2BQ6NUJ5 590 aa12.3□□□□□ -0.44
USP42-206ENST00000479544 SYS1Q8N2H4 156 aa12.3□□□□□ -0.44
USP42-206ENST00000479544 TMEM217Q8N7C4 229 aa12.3□□□□□ -0.44
USP42-206ENST00000479544 SLCO1C1Q9NYB5 712 aa12.3□□□□□ -0.44
USP42-206ENST00000479544 LRFN1Q9P244 771 aa12.3□□□□□ -0.44
USP42-206ENST00000479544 SPTA1P02549 2419 aa12.3□□□□□ -0.44
USP42-206ENST00000479544 NFYBP25208 207 aa12.3□□□□□ -0.44
USP42-206ENST00000479544 Q6ZNB5 142 aa12.3□□□□□ -0.44
USP42-206ENST00000479544 BEND4Q6ZU67 534 aa12.3□□□□□ -0.44
USP42-206ENST00000479544 Q7L0L9 218 aa12.3□□□□□ -0.44
USP42-206ENST00000479544 SLC16A9Q7RTY1 509 aa12.3□□□□□ -0.44
USP42-206ENST00000479544 PRSS41Q7RTY9 318 aa12.3□□□□□ -0.44
USP42-206ENST00000479544 OR5D14Q8NGL3 314 aa12.3□□□□□ -0.44
USP42-206ENST00000479544 METTL7AQ9H8H3 244 aa12.3□□□□□ -0.44
USP42-206ENST00000479544 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.29□□□□□ -0.44
USP42-206ENST00000479544 HOXD4P09016 255 aaPredicted RBP12.29□□□□□ -0.44
USP42-206ENST00000479544 SPP1P10451 314 aa12.29□□□□□ -0.44
USP42-206ENST00000479544 KLF9Q13886 244 aaPredicted RBP12.29□□□□□ -0.44
USP42-206ENST00000479544 ARHGAP11BQ3KRB8 267 aa12.29□□□□□ -0.44
USP42-206ENST00000479544 WBP2NLQ6ICG8 309 aa12.29□□□□□ -0.44
USP42-206ENST00000479544 SLC2A12Q8TD20 617 aa12.29□□□□□ -0.44
USP42-206ENST00000479544 GIMAP5Q96F15 307 aa12.29□□□□□ -0.44
USP42-206ENST00000479544 PIGQQ9BRB3 760 aa12.29□□□□□ -0.44
USP42-206ENST00000479544 TCEAL7Q9BRU2 100 aa12.29□□□□□ -0.44
USP42-206ENST00000479544 EPHX3Q9H6B9 360 aa12.29□□□□□ -0.44
USP42-206ENST00000479544 RHOFQ9HBH0 211 aa12.29□□□□□ -0.44
USP42-206ENST00000479544 PRDM7Q9NQW5 492 aa12.29□□□□□ -0.44
USP42-206ENST00000479544 EXOGQ9Y2C4 368 aaKnown RBP12.29□□□□□ -0.44
USP42-206ENST00000479544 COA3Q9Y2R0 106 aaPredicted RBP12.29□□□□□ -0.44
USP42-206ENST00000479544 PCYT1BQ9Y5K3 369 aaPredicted RBP12.29□□□□□ -0.44
USP42-206ENST00000479544 A0A0U1RQK1 487 aa12.29□□□□□ -0.44
USP42-206ENST00000479544 RUNX3Q13761 415 aa12.29□□□□□ -0.44
USP42-206ENST00000479544 UBXN2BQ14CS0 331 aa12.29□□□□□ -0.44
USP42-206ENST00000479544 TMEM244Q5VVB8 128 aa12.29□□□□□ -0.44
USP42-206ENST00000479544 C11orf87Q6NUJ2 197 aa12.29□□□□□ -0.44
USP42-206ENST00000479544 GVQW1Q8N7I0 195 aa12.29□□□□□ -0.44
USP42-206ENST00000479544 MRPL43Q8N983 215 aaKnown RBP12.29□□□□□ -0.44
USP42-206ENST00000479544 LMX1AQ8TE12 382 aa12.29□□□□□ -0.44
USP42-206ENST00000479544 RNF215Q9Y6U7 377 aa12.29□□□□□ -0.44
USP42-206ENST00000479544 A0A0A6YYD5 115 aa12.29□□□□□ -0.44
USP42-206ENST00000479544 PHYHO14832 338 aa12.29□□□□□ -0.44
USP42-206ENST00000479544 XRCC3O43542 346 aa12.29□□□□□ -0.44
USP42-206ENST00000479544 NUDT21O43809 227 aaKnown RBP12.29□□□□□ -0.44
USP42-206ENST00000479544 GLSO94925 669 aaPredicted RBP12.29□□□□□ -0.44
USP42-206ENST00000479544 CRYBA1P05813 215 aa12.29□□□□□ -0.44
USP42-206ENST00000479544 BLVRBP30043 206 aaPredicted RBP12.29□□□□□ -0.44
USP42-206ENST00000479544 AFF3P51826 1226 aaKnown RBP12.29□□□□□ -0.44
USP42-206ENST00000479544 DOC2BQ14184 412 aa12.29□□□□□ -0.44
USP42-206ENST00000479544 CDKN3Q16667 212 aa12.29□□□□□ -0.44
USP42-206ENST00000479544 CD300LDQ6UXZ3 194 aa12.29□□□□□ -0.44
USP42-206ENST00000479544 HIST2H3AQ71DI3 136 aa12.29□□□□□ -0.44
USP42-206ENST00000479544 OR51Q1Q8NH59 317 aa12.29□□□□□ -0.44
USP42-206ENST00000479544 C19orf53Q9UNZ5 99 aaPredicted RBP12.29□□□□□ -0.44
USP42-206ENST00000479544 ACSM1Q08AH1 577 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 EEF1A1P5Q5VTE0 462 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 DMKNQ6E0U4 476 aaPredicted RBP12.28□□□□□ -0.44
USP42-206ENST00000479544 DCXRQ7Z4W1 244 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 C12orf40Q86WS4 652 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 FAM24BQ8N5W8 94 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 AVL9Q8NBF6 648 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 ARHGDIGQ99819 225 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 LUZP4Q9P127 313 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 MTFP1Q9UDX5 166 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.28□□□□□ -0.44
USP42-206ENST00000479544 CACNA1GO43497 2377 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms