RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 NTNG2Q96CW9 530 aa12.26□□□□□ -0.45
COL6A3-209ENST00000472056 SLC35E1Q96K37 410 aa12.26□□□□□ -0.45
COL6A3-209ENST00000472056 DNMT3BQ9UBC3 853 aaKnown RBP12.26□□□□□ -0.45
COL6A3-209ENST00000472056 POLDIP2Q9Y2S7 368 aa12.26□□□□□ -0.45
COL6A3-209ENST00000472056 MMACHCQ9Y4U1 282 aa12.26□□□□□ -0.45
COL6A3-209ENST00000472056 ARL2-SNX15V9GYD0 113 aa12.26□□□□□ -0.45
COL6A3-209ENST00000472056 COL11A1P12107 1806 aaPredicted RBP12.26□□□□□ -0.45
COL6A3-209ENST00000472056 A8MU76 341 aa12.26□□□□□ -0.45
COL6A3-209ENST00000472056 TERTO14746 1132 aaKnown RBP12.26□□□□□ -0.45
COL6A3-209ENST00000472056 DHPSP49366 369 aaPredicted RBP12.26□□□□□ -0.45
COL6A3-209ENST00000472056 POU3F1Q03052 451 aaPredicted RBP12.26□□□□□ -0.45
COL6A3-209ENST00000472056 PRDX1Q06830 199 aaKnown RBP12.26□□□□□ -0.45
COL6A3-209ENST00000472056 SMIM4Q8WVI0 70 aa12.26□□□□□ -0.45
COL6A3-209ENST00000472056 ZNF778Q96MU6 729 aa12.26□□□□□ -0.45
COL6A3-209ENST00000472056 BET1O15155 118 aa12.26□□□□□ -0.45
COL6A3-209ENST00000472056 PTNP21246 168 aa12.26□□□□□ -0.45
COL6A3-209ENST00000472056 AANATQ16613 207 aa12.26□□□□□ -0.45
COL6A3-209ENST00000472056 HEYLQ9NQ87 328 aaPredicted RBP12.26□□□□□ -0.45
COL6A3-209ENST00000472056 DCAF16Q9NXF7 216 aa12.26□□□□□ -0.45
COL6A3-209ENST00000472056 TUSC2O75896 110 aa12.26□□□□□ -0.45
COL6A3-209ENST00000472056 P2RX3P56373 397 aa12.26□□□□□ -0.45
COL6A3-209ENST00000472056 FOXK2Q01167 660 aa12.26□□□□□ -0.45
COL6A3-209ENST00000472056 IKZF1Q13422 519 aa12.26□□□□□ -0.45
COL6A3-209ENST00000472056 OR4F5Q8NH21 305 aa12.26□□□□□ -0.45
COL6A3-209ENST00000472056 OR4F4Q96R69 305 aa12.26□□□□□ -0.45
COL6A3-209ENST00000472056 TSPAN12O95859 305 aa12.26□□□□□ -0.45
COL6A3-209ENST00000472056 TIMP2P16035 220 aa12.26□□□□□ -0.45
COL6A3-209ENST00000472056 CCR6P51684 374 aa12.26□□□□□ -0.45
COL6A3-209ENST00000472056 SPRED3Q2MJR0 410 aa12.26□□□□□ -0.45
COL6A3-209ENST00000472056 PELI3Q8N2H9 469 aa12.26□□□□□ -0.45
COL6A3-209ENST00000472056 OR13C5Q8NGS8 318 aa12.26□□□□□ -0.45
COL6A3-209ENST00000472056 C1QTNF3Q9BXJ4 246 aa12.26□□□□□ -0.45
COL6A3-209ENST00000472056 A0A1W2PQU0 124 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 OR5H8P0DN80 308 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 APEX1P27695 318 aaKnown RBP12.25□□□□□ -0.45
COL6A3-209ENST00000472056 GABREP78334 506 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 HSD17B11Q8NBQ5 300 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 OR5B3Q8NH48 314 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 GALNT9Q9HCQ5 603 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 FBXO34Q9NWN3 711 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 SERPINE3A8MV23 424 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 PLRG1O43660 514 aaKnown RBP12.25□□□□□ -0.45
COL6A3-209ENST00000472056 RPL12P30050 165 aaKnown RBP12.25□□□□□ -0.45
COL6A3-209ENST00000472056 BMI1P35226 326 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 PKDCCQ504Y2 493 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 IL20RBQ6UXL0 311 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 WNK3Q9BYP7 1800 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 OPN1MWP04001 364 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 OPN1MW2P0DN77 364 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 OPN1MW3P0DN78 364 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 PIGAP37287 484 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 SEMA3BQ13214 749 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 EXOSC2Q13868 293 aaKnown RBP12.25□□□□□ -0.45
COL6A3-209ENST00000472056 OR51S1Q8NGJ8 323 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 ADAM11O75078 769 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 CD80P33681 288 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 MFAP5Q13361 173 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 THEM4Q5T1C6 240 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 TMEM184AQ6ZMB5 413 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 AKIP1Q9NQ31 210 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 SLCO3A1Q9UIG8 710 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 PRAMEF4O60810 478 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 AMTP48728 403 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 YPEL5P62699 121 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 ZNF626Q68DY1 528 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 LYG2Q86SG7 212 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 ZDHHC22Q8N966 263 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 ZNF391Q9UJN7 358 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 TRAV20A0A0B4J274 112 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 SUSD5O60279 629 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 FCGR2AP12318 317 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 BIDP55957 195 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 FAM74A3Q4VXF1 159 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 LRP10Q7Z4F1 713 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 MUCL1Q96DR8 90 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 TMEM128Q5BJH2 165 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 ELFN2Q5R3F8 820 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 SLC16A14Q7RTX9 510 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 PRSS42Q7Z5A4 293 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 Q8N9G6 341 aaPredicted RBP12.25□□□□□ -0.45
COL6A3-209ENST00000472056 ST8SIA2Q92186 375 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 SLC35B3Q9H1N7 401 aa12.25□□□□□ -0.45
COL6A3-209ENST00000472056 ESRP2Q9H6T0 727 aaKnown RBP12.25□□□□□ -0.45
COL6A3-209ENST00000472056 NCBP2LA6PVI3 153 aaKnown RBP12.24□□□□□ -0.45
COL6A3-209ENST00000472056 SOD1P00441 154 aa12.24□□□□□ -0.45
COL6A3-209ENST00000472056 POU3F2P20265 443 aaPredicted RBP12.24□□□□□ -0.45
COL6A3-209ENST00000472056 Q1RN00 199 aa12.24□□□□□ -0.45
COL6A3-209ENST00000472056 FAM57BQ71RH2 274 aa12.24□□□□□ -0.45
COL6A3-209ENST00000472056 ZNF534Q76KX8 674 aa12.24□□□□□ -0.45
COL6A3-209ENST00000472056 BTAF1O14981 1849 aa12.24□□□□□ -0.45
COL6A3-209ENST00000472056 SORBS2O94875 1100 aaKnown RBP12.24□□□□□ -0.45
COL6A3-209ENST00000472056 YIF1AO95070 293 aa12.24□□□□□ -0.45
COL6A3-209ENST00000472056 STATHP02808 62 aa12.24□□□□□ -0.45
COL6A3-209ENST00000472056 FOXA1P55317 472 aa12.24□□□□□ -0.45
COL6A3-209ENST00000472056 RAB38P57729 211 aa12.24□□□□□ -0.45
COL6A3-209ENST00000472056 MBTPS1Q14703 1052 aa12.24□□□□□ -0.45
COL6A3-209ENST00000472056 FYTTD1Q96QD9 318 aaKnown RBP12.24□□□□□ -0.45
COL6A3-209ENST00000472056 TPPP3Q9BW30 176 aa12.24□□□□□ -0.45
COL6A3-209ENST00000472056 ACOXLQ9NUZ1 547 aa12.24□□□□□ -0.45
COL6A3-209ENST00000472056 FAM24AA6NFZ4 105 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms