RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 CRYBG3Q68DQ2 2970 aa12.88□□□□□ -0.35
COL9A3-209ENST00000469852 DEFB108AA8MXU0 73 aa12.87□□□□□ -0.35
COL9A3-209ENST00000469852 H0YJX3 145 aa12.87□□□□□ -0.35
COL9A3-209ENST00000469852 PRODHO43272 600 aa12.87□□□□□ -0.35
COL9A3-209ENST00000469852 SELENOFO60613 162 aa12.87□□□□□ -0.35
COL9A3-209ENST00000469852 ENTPD6O75354 484 aa12.87□□□□□ -0.35
COL9A3-209ENST00000469852 CRYGSP22914 178 aa12.87□□□□□ -0.35
COL9A3-209ENST00000469852 LOXP28300 417 aaPredicted RBP12.87□□□□□ -0.35
COL9A3-209ENST00000469852 GSTT1P30711 240 aa12.87□□□□□ -0.35
COL9A3-209ENST00000469852 FMO3P31513 532 aa12.87□□□□□ -0.35
COL9A3-209ENST00000469852 VHLP40337 213 aa12.87□□□□□ -0.35
COL9A3-209ENST00000469852 RPS7P62081 194 aaKnown RBP12.87□□□□□ -0.35
COL9A3-209ENST00000469852 SNRPGP62308 76 aaKnown RBP12.87□□□□□ -0.35
COL9A3-209ENST00000469852 RAB1AP62820 205 aa12.87□□□□□ -0.35
COL9A3-209ENST00000469852 GSG1Q2KHT4 349 aa12.87□□□□□ -0.35
COL9A3-209ENST00000469852 NXNL2Q5VZ03 156 aa12.87□□□□□ -0.35
COL9A3-209ENST00000469852 TTC23Q5W5X9 447 aa12.87□□□□□ -0.35
COL9A3-209ENST00000469852 ZNF787Q6DD87 383 aa12.87□□□□□ -0.35
COL9A3-209ENST00000469852 CORO6Q6QEF8 472 aa12.87□□□□□ -0.35
COL9A3-209ENST00000469852 USP51Q70EK9 711 aa12.87□□□□□ -0.35
COL9A3-209ENST00000469852 ZNF584Q8IVC4 421 aa12.87□□□□□ -0.35
COL9A3-209ENST00000469852 TIGD4Q8IY51 512 aa12.87□□□□□ -0.35
COL9A3-209ENST00000469852 RHOXF1Q8NHV9 184 aa12.87□□□□□ -0.35
COL9A3-209ENST00000469852 FAM222BQ8WU58 562 aa12.87□□□□□ -0.35
COL9A3-209ENST00000469852 TEAD3Q99594 435 aa12.87□□□□□ -0.35
COL9A3-209ENST00000469852 USB1Q9BQ65 265 aaKnown RBP12.87□□□□□ -0.35
COL9A3-209ENST00000469852 WNT5BQ9H1J7 359 aa12.87□□□□□ -0.35
COL9A3-209ENST00000469852 MARCH7Q9H992 704 aa12.87□□□□□ -0.35
COL9A3-209ENST00000469852 OBP2BQ9NPH6 170 aa12.87□□□□□ -0.35
COL9A3-209ENST00000469852 CRNNQ9UBG3 495 aaPredicted RBP12.87□□□□□ -0.35
COL9A3-209ENST00000469852 ASH2LQ9UBL3 628 aa12.87□□□□□ -0.35
COL9A3-209ENST00000469852 MOKQ9UQ07 419 aa12.87□□□□□ -0.35
COL9A3-209ENST00000469852 CACNA1DQ01668 2161 aa12.87□□□□□ -0.35
COL9A3-209ENST00000469852 CENPEQ02224 2701 aa12.87□□□□□ -0.35
COL9A3-209ENST00000469852 CELSR2Q9HCU4 2923 aa12.86□□□□□ -0.35
COL9A3-209ENST00000469852 IGHV1-18A0A0C4DH31 117 aa12.86□□□□□ -0.35
COL9A3-209ENST00000469852 DPRXA6NFQ7 191 aa12.86□□□□□ -0.35
COL9A3-209ENST00000469852 H0YAE9 185 aa12.86□□□□□ -0.35
COL9A3-209ENST00000469852 M0R1B8 84 aa12.86□□□□□ -0.35
COL9A3-209ENST00000469852 UBL3O95164 117 aa12.86□□□□□ -0.35
COL9A3-209ENST00000469852 WNT11O96014 354 aa12.86□□□□□ -0.35
COL9A3-209ENST00000469852 IGKV3-15P01624 115 aa12.86□□□□□ -0.35
COL9A3-209ENST00000469852 HRGP04196 525 aa12.86□□□□□ -0.35
COL9A3-209ENST00000469852 MRPL3P09001 348 aaKnown RBP12.86□□□□□ -0.35
COL9A3-209ENST00000469852 COX6B1P14854 86 aa12.86□□□□□ -0.35
COL9A3-209ENST00000469852 CBR1P16152 277 aa12.86□□□□□ -0.35
COL9A3-209ENST00000469852 PEX19P40855 299 aa12.86□□□□□ -0.35
COL9A3-209ENST00000469852 NAA10P41227 235 aaPredicted RBP12.86□□□□□ -0.35
COL9A3-209ENST00000469852 GUCA1AP43080 201 aaPredicted RBP12.86□□□□□ -0.35
COL9A3-209ENST00000469852 IDH3GP51553 393 aaPredicted RBP12.86□□□□□ -0.35
COL9A3-209ENST00000469852 LSM6P62312 80 aaKnown RBP12.86□□□□□ -0.35
COL9A3-209ENST00000469852 ADAM8P78325 824 aa12.86□□□□□ -0.35
COL9A3-209ENST00000469852 PSG4Q00888 419 aa12.86□□□□□ -0.35
COL9A3-209ENST00000469852 SPOCK1Q08629 439 aa12.86□□□□□ -0.35
COL9A3-209ENST00000469852 RAB39AQ14964 217 aa12.86□□□□□ -0.35
COL9A3-209ENST00000469852 SLC35D3Q5M8T2 416 aa12.86□□□□□ -0.35
COL9A3-209ENST00000469852 MEPCEQ7L2J0 689 aaKnown RBP12.86□□□□□ -0.35
COL9A3-209ENST00000469852 ERI1Q8IV48 349 aaKnown RBP12.86□□□□□ -0.35
COL9A3-209ENST00000469852 DEPDC4Q8N2C3 294 aa12.86□□□□□ -0.35
COL9A3-209ENST00000469852 AKR7LQ8NHP1 331 aa12.86□□□□□ -0.35
COL9A3-209ENST00000469852 CNIH3Q8TBE1 160 aa12.86□□□□□ -0.35
COL9A3-209ENST00000469852 TRUB1Q8WWH5 349 aaKnown RBP12.86□□□□□ -0.35
COL9A3-209ENST00000469852 HS3ST6Q96QI5 342 aa12.86□□□□□ -0.35
COL9A3-209ENST00000469852 VCX3BQ9H321 246 aa12.86□□□□□ -0.35
COL9A3-209ENST00000469852 RNF121Q9H920 327 aa12.86□□□□□ -0.35
COL9A3-209ENST00000469852 CADP27708 2225 aa12.85□□□□□ -0.35
COL9A3-209ENST00000469852 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.85□□□□□ -0.35
COL9A3-209ENST00000469852 RER1O15258 196 aa12.85□□□□□ -0.35
COL9A3-209ENST00000469852 WBP4O75554 376 aaKnown RBP12.85□□□□□ -0.35
COL9A3-209ENST00000469852 IGLV1-44P01699 117 aa12.85□□□□□ -0.35
COL9A3-209ENST00000469852 CECR9P0C854 216 aa12.85□□□□□ -0.35
COL9A3-209ENST00000469852 ZNF14P17017 642 aaPredicted RBP12.85□□□□□ -0.35
COL9A3-209ENST00000469852 ENTPD1P49961 510 aa12.85□□□□□ -0.35
COL9A3-209ENST00000469852 HCCSP53701 268 aa12.85□□□□□ -0.35
COL9A3-209ENST00000469852 CDH11P55287 796 aa12.85□□□□□ -0.35
COL9A3-209ENST00000469852 ISL1P61371 349 aa12.85□□□□□ -0.35
COL9A3-209ENST00000469852 HIST1H3AP68431 136 aa12.85□□□□□ -0.35
COL9A3-209ENST00000469852 IL5RAQ01344 420 aa12.85□□□□□ -0.35
COL9A3-209ENST00000469852 AQP6Q13520 282 aa12.85□□□□□ -0.35
COL9A3-209ENST00000469852 MAD2L1BPQ15013 274 aaPredicted RBP12.85□□□□□ -0.35
COL9A3-209ENST00000469852 SNCBQ16143 134 aa12.85□□□□□ -0.35
COL9A3-209ENST00000469852 OCLNQ16625 522 aa12.85□□□□□ -0.35
COL9A3-209ENST00000469852 SMN1Q16637 294 aaKnown RBP12.85□□□□□ -0.35
COL9A3-209ENST00000469852 SLC36A2Q495M3 483 aa12.85□□□□□ -0.35
COL9A3-209ENST00000469852 CCDC92Q53HC0 331 aaPredicted RBP12.85□□□□□ -0.35
COL9A3-209ENST00000469852 PABPC1L2AQ5JQF8 200 aa12.85□□□□□ -0.35
COL9A3-209ENST00000469852 SLC25A30Q5SVS4 291 aa12.85□□□□□ -0.35
COL9A3-209ENST00000469852 HIST2H3PS2Q5TEC6 136 aa12.85□□□□□ -0.35
COL9A3-209ENST00000469852 SLC18B1Q6NT16 456 aa12.85□□□□□ -0.35
COL9A3-209ENST00000469852 ZNF774Q6NX45 483 aa12.85□□□□□ -0.35
COL9A3-209ENST00000469852 CFAP77Q6ZQR2 320 aa12.85□□□□□ -0.35
COL9A3-209ENST00000469852 HIST2H3AQ71DI3 136 aa12.85□□□□□ -0.35
COL9A3-209ENST00000469852 CCDC36Q8IYA8 594 aa12.85□□□□□ -0.35
COL9A3-209ENST00000469852 ZNF295-AS1Q8N0V1 137 aa12.85□□□□□ -0.35
COL9A3-209ENST00000469852 CPEB3Q8NE35 698 aaKnown RBP12.85□□□□□ -0.35
COL9A3-209ENST00000469852 OR10H5Q8NGA6 315 aa12.85□□□□□ -0.35
COL9A3-209ENST00000469852 OR10S1Q8NGN2 331 aa12.85□□□□□ -0.35
COL9A3-209ENST00000469852 NANOS1Q8WY41 292 aaKnown RBP12.85□□□□□ -0.35
COL9A3-209ENST00000469852 PLPPR2Q96GM1 343 aa12.85□□□□□ -0.35
COL9A3-209ENST00000469852 OR2H1Q9GZK4 316 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms