RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 MOSPD2Q8NHP6 518 aa11.26□□□□□ -0.61
HMGB3-204ENST00000448905 PFN4Q8NHR9 129 aa11.26□□□□□ -0.61
HMGB3-204ENST00000448905 TMEM255BQ8WV15 326 aa11.26□□□□□ -0.61
HMGB3-204ENST00000448905 IPCEF1Q8WWN9 437 aaPredicted RBP11.26□□□□□ -0.61
HMGB3-204ENST00000448905 C22orf15Q8WYQ4 148 aa11.26□□□□□ -0.61
HMGB3-204ENST00000448905 GTF3AQ92664 365 aaKnown RBP11.26□□□□□ -0.61
HMGB3-204ENST00000448905 SAMD8Q96LT4 415 aa11.26□□□□□ -0.61
HMGB3-204ENST00000448905 COG8Q96MW5 612 aa11.26□□□□□ -0.61
HMGB3-204ENST00000448905 OR2H1Q9GZK4 316 aa11.26□□□□□ -0.61
HMGB3-204ENST00000448905 EGFL7Q9UHF1 273 aa11.26□□□□□ -0.61
HMGB3-204ENST00000448905 OPN4Q9UHM6 478 aa11.26□□□□□ -0.61
HMGB3-204ENST00000448905 NDRG4Q9ULP0 352 aaKnown RBP11.26□□□□□ -0.61
HMGB3-204ENST00000448905 UGT2A1Q9Y4X1 527 aa11.26□□□□□ -0.61
HMGB3-204ENST00000448905 PPIAL4AQ9Y536 164 aa11.26□□□□□ -0.61
HMGB3-204ENST00000448905 A6NIZ1 184 aa11.25□□□□□ -0.61
HMGB3-204ENST00000448905 ICMTO60725 284 aa11.25□□□□□ -0.61
HMGB3-204ENST00000448905 NPPAP01160 153 aa11.25□□□□□ -0.61
HMGB3-204ENST00000448905 HKR1P10072 659 aa11.25□□□□□ -0.61
HMGB3-204ENST00000448905 CPT2P23786 658 aa11.25□□□□□ -0.61
HMGB3-204ENST00000448905 PRTN3P24158 256 aa11.25□□□□□ -0.61
HMGB3-204ENST00000448905 LAP3P28838 519 aa11.25□□□□□ -0.61
HMGB3-204ENST00000448905 RAP1BP61224 184 aa11.25□□□□□ -0.61
HMGB3-204ENST00000448905 RAP1AP62834 184 aa11.25□□□□□ -0.61
HMGB3-204ENST00000448905 ST3GAL3Q11203 375 aa11.25□□□□□ -0.61
HMGB3-204ENST00000448905 CDK5R2Q13319 367 aa11.25□□□□□ -0.61
HMGB3-204ENST00000448905 ANKDD1AQ495B1 522 aa11.25□□□□□ -0.61
HMGB3-204ENST00000448905 BEND6Q5SZJ8 279 aaPredicted RBP11.25□□□□□ -0.61
HMGB3-204ENST00000448905 NANOGP8Q6NSW7 305 aa11.25□□□□□ -0.61
HMGB3-204ENST00000448905 ERICH5Q6P6B1 374 aa11.25□□□□□ -0.61
HMGB3-204ENST00000448905 SLC25A47Q6Q0C1 308 aa11.25□□□□□ -0.61
HMGB3-204ENST00000448905 NPEPL1Q8NDH3 523 aa11.25□□□□□ -0.61
HMGB3-204ENST00000448905 HDAC2Q92769 488 aaKnown RBP11.25□□□□□ -0.61
HMGB3-204ENST00000448905 SLC25A28Q96A46 364 aa11.25□□□□□ -0.61
HMGB3-204ENST00000448905 NABP1Q96AH0 204 aa11.25□□□□□ -0.61
HMGB3-204ENST00000448905 MAGEB18Q96M61 343 aa11.25□□□□□ -0.61
HMGB3-204ENST00000448905 ZNF696Q9H7X3 374 aa11.25□□□□□ -0.61
HMGB3-204ENST00000448905 MSL2Q9HCI7 577 aa11.25□□□□□ -0.61
HMGB3-204ENST00000448905 C20orf141Q9NUB4 165 aa11.25□□□□□ -0.61
HMGB3-204ENST00000448905 TMEM106BQ9NUM4 274 aa11.25□□□□□ -0.61
HMGB3-204ENST00000448905 INTS9Q9NV88 658 aaKnown RBP11.25□□□□□ -0.61
HMGB3-204ENST00000448905 TBCCD1Q9NVR7 557 aa11.25□□□□□ -0.61
HMGB3-204ENST00000448905 PLEK2Q9NYT0 353 aa11.25□□□□□ -0.61
HMGB3-204ENST00000448905 PURGQ9UJV8 347 aaKnown RBP11.25□□□□□ -0.61
HMGB3-204ENST00000448905 PCDHGB1Q9Y5G3 927 aa11.25□□□□□ -0.61
HMGB3-204ENST00000448905 ZSCAN5BA6NJL1 495 aa11.24□□□□□ -0.61
HMGB3-204ENST00000448905 POM121CA8CG34 1229 aa11.24□□□□□ -0.61
HMGB3-204ENST00000448905 ABHD16AO95870 558 aa11.24□□□□□ -0.61
HMGB3-204ENST00000448905 NGFP01138 241 aa11.24□□□□□ -0.61
HMGB3-204ENST00000448905 TSPAN19P0C672 248 aa11.24□□□□□ -0.61
HMGB3-204ENST00000448905 MSR1P21757 451 aa11.24□□□□□ -0.61
HMGB3-204ENST00000448905 SLC6A9P48067 706 aa11.24□□□□□ -0.61
HMGB3-204ENST00000448905 CTXN1P60606 82 aa11.24□□□□□ -0.61
HMGB3-204ENST00000448905 ZNF154Q13106 437 aa11.24□□□□□ -0.61
HMGB3-204ENST00000448905 BAMBIQ13145 260 aa11.24□□□□□ -0.61
HMGB3-204ENST00000448905 TOP3AQ13472 1001 aaPredicted RBP11.24□□□□□ -0.61
HMGB3-204ENST00000448905 TMEM155Q4W5P6 130 aa11.24□□□□□ -0.61
HMGB3-204ENST00000448905 PRR31Q5SQ13 230 aa11.24□□□□□ -0.61
HMGB3-204ENST00000448905 SLC27A4Q6P1M0 643 aa11.24□□□□□ -0.61
HMGB3-204ENST00000448905 TSPYL5Q86VY4 417 aaPredicted RBP11.24□□□□□ -0.61
HMGB3-204ENST00000448905 LRRC28Q86X40 367 aaPredicted RBP11.24□□□□□ -0.61
HMGB3-204ENST00000448905 SIGLECL1Q8N7X8 197 aa11.24□□□□□ -0.61
HMGB3-204ENST00000448905 LZICQ8WZA0 190 aa11.24□□□□□ -0.61
HMGB3-204ENST00000448905 DVL3Q92997 716 aaPredicted RBP11.24□□□□□ -0.61
HMGB3-204ENST00000448905 BPIFA2Q96DR5 249 aa11.24□□□□□ -0.61
HMGB3-204ENST00000448905 ATP6V1G3Q96LB4 118 aa11.24□□□□□ -0.61
HMGB3-204ENST00000448905 SIKE1Q9BRV8 207 aa11.24□□□□□ -0.61
HMGB3-204ENST00000448905 MS4A7Q9GZW8 240 aaPredicted RBP11.24□□□□□ -0.61
HMGB3-204ENST00000448905 WNT5BQ9H1J7 359 aa11.24□□□□□ -0.61
HMGB3-204ENST00000448905 PATZ1Q9HBE1 687 aaKnown RBP11.24□□□□□ -0.61
HMGB3-204ENST00000448905 ESM1Q9NQ30 184 aa11.24□□□□□ -0.61
HMGB3-204ENST00000448905 IL19Q9UHD0 177 aa11.24□□□□□ -0.61
HMGB3-204ENST00000448905 PPP1R3CQ9UQK1 317 aa11.24□□□□□ -0.61
HMGB3-204ENST00000448905 HIF3AQ9Y2N7 669 aa11.24□□□□□ -0.61
HMGB3-204ENST00000448905 A0A1W2PPL8 197 aa11.23□□□□□ -0.61
HMGB3-204ENST00000448905 IFNL4K9M1U5 179 aa11.23□□□□□ -0.61
HMGB3-204ENST00000448905 KCNAB3O43448 404 aa11.23□□□□□ -0.61
HMGB3-204ENST00000448905 IGHMP01871 453 aa11.23□□□□□ -0.61
HMGB3-204ENST00000448905 COX5BP10606 129 aa11.23□□□□□ -0.61
HMGB3-204ENST00000448905 IFI30P13284 250 aa11.23□□□□□ -0.61
HMGB3-204ENST00000448905 ZFP36P26651 326 aaKnown RBP11.23□□□□□ -0.61
HMGB3-204ENST00000448905 OR1E2P47887 323 aa11.23□□□□□ -0.61
HMGB3-204ENST00000448905 MTNR1AP48039 350 aa11.23□□□□□ -0.61
HMGB3-204ENST00000448905 FMODQ06828 376 aa11.23□□□□□ -0.61
HMGB3-204ENST00000448905 PSG7Q13046 419 aa11.23□□□□□ -0.61
HMGB3-204ENST00000448905 ESCO2Q56NI9 601 aa11.23□□□□□ -0.61
HMGB3-204ENST00000448905 ZNF774Q6NX45 483 aa11.23□□□□□ -0.61
HMGB3-204ENST00000448905 DOK3Q7L591 496 aa11.23□□□□□ -0.61
HMGB3-204ENST00000448905 OAFQ86UD1 273 aa11.23□□□□□ -0.61
HMGB3-204ENST00000448905 OR2Z1Q8NG97 314 aa11.23□□□□□ -0.61
HMGB3-204ENST00000448905 OR8J3Q8NGG0 315 aa11.23□□□□□ -0.61
HMGB3-204ENST00000448905 GEMIN6Q8WXD5 167 aaKnown RBP11.23□□□□□ -0.61
HMGB3-204ENST00000448905 PTP4A1Q93096 173 aa11.23□□□□□ -0.61
HMGB3-204ENST00000448905 NMD3Q96D46 503 aaKnown RBP11.23□□□□□ -0.61
HMGB3-204ENST00000448905 NDEL1Q9GZM8 345 aa11.23□□□□□ -0.61
HMGB3-204ENST00000448905 GRHPRQ9UBQ7 328 aa11.23□□□□□ -0.61
HMGB3-204ENST00000448905 OR5V1Q9UGF6 321 aa11.23□□□□□ -0.61
HMGB3-204ENST00000448905 POLR3KQ9Y2Y1 108 aaPredicted RBP11.23□□□□□ -0.61
HMGB3-204ENST00000448905 IGKV1D-43A0A0B4J1Z2 117 aa11.22□□□□□ -0.61
HMGB3-204ENST00000448905 XKRYO14609 159 aa11.22□□□□□ -0.61
HMGB3-204ENST00000448905 TMPRSS2O15393 492 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms