RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 IL13RA2Q14627 380 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 RNF151Q2KHN1 245 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 MEX3BQ6ZN04 569 aaKnown RBP6.62□□□□□ -1.35
VPS53-204ENST00000437048 FA2HQ7L5A8 372 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 KLRG1Q96E93 195 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 OR5B2Q96R09 309 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 DICER1Q9UPY3 1922 aaKnown RBP6.62□□□□□ -1.35
VPS53-204ENST00000437048 DUS4LO95620 317 aaKnown RBP6.62□□□□□ -1.35
VPS53-204ENST00000437048 HMGN2P05204 90 aaKnown RBP6.62□□□□□ -1.35
VPS53-204ENST00000437048 EIF4EP06730 217 aaKnown RBP6.62□□□□□ -1.35
VPS53-204ENST00000437048 HNF1BP35680 557 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 CD96P40200 585 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 MDH2P40926 338 aaKnown RBP6.62□□□□□ -1.35
VPS53-204ENST00000437048 OC90Q02509 493 aaPredicted RBP6.62□□□□□ -1.35
VPS53-204ENST00000437048 SLC25A30Q5SVS4 291 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 PSAPL1Q6NUJ1 521 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 NPSR1Q6W5P4 371 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 ST8SIA1Q92185 356 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 NDRG2Q9UN36 371 aaKnown RBP6.62□□□□□ -1.35
VPS53-204ENST00000437048 AGFG1P52594 562 aaKnown RBP6.62□□□□□ -1.35
VPS53-204ENST00000437048 IGFBP7Q16270 282 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 NAGSQ8N159 534 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 LMX1AQ8TE12 382 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 RASL12Q9NYN1 266 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 DOCK8Q8NF50 2099 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 M0R1X1 148 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 CD80P33681 288 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 KIR2DS2P43631 304 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 RPS24P62847 133 aaKnown RBP6.62□□□□□ -1.35
VPS53-204ENST00000437048 C17orf67Q0P5P2 114 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 OR4D1Q15615 310 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 ARSIQ5FYB1 569 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 AADACL3Q5VUY0 350 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 TMEM65Q6PI78 240 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 OGFOD3Q6PK18 319 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 SLC35G3Q8N808 338 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 PTPN18Q99952 460 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 RALYQ9UKM9 306 aaKnown RBP6.62□□□□□ -1.35
VPS53-204ENST00000437048 ZDHHC8Q9ULC8 765 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 NACAE9PAV3 2078 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 NDUFB6O95139 128 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 CLDN1O95832 211 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 CTSAP10619 480 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 PPP1R8Q12972 351 aaKnown RBP6.62□□□□□ -1.35
VPS53-204ENST00000437048 CPEB4Q17RY0 729 aaKnown RBP eCLIP6.62□□□□□ -1.35
VPS53-204ENST00000437048 SYT14P1Q58G82 188 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 OR4F15Q8NGB8 312 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 TAAR9Q96RI9 348 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 TBX21Q9UL17 535 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 A0A0B4J2A0 478 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 DCDC2BA2VCK2 349 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 CNN1P51911 297 aaKnown RBP6.62□□□□□ -1.35
VPS53-204ENST00000437048 PIN1Q13526 163 aaPredicted RBP6.62□□□□□ -1.35
VPS53-204ENST00000437048 SLC5A12Q1EHB4 618 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 SLC35G1Q2M3R5 365 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 THEM4Q5T1C6 240 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 AFMIDQ63HM1 303 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 OVCH2Q7RTZ1 564 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 CLEC4DQ8WXI8 215 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 YIPF6Q96EC8 236 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 WDR34Q96EX3 536 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 OSER1Q9NX31 292 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 SHPKQ9UHJ6 478 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 A0A1B0GUL6 1792 aa6.62□□□□□ -1.35
VPS53-204ENST00000437048 DOCK11Q5JSL3 2073 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 ENPP3O14638 875 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 HOXD11P31277 338 aaPredicted RBP6.61□□□□□ -1.35
VPS53-204ENST00000437048 AGTR2P50052 363 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 RAB38P57729 211 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 CLDN19Q8N6F1 224 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 OR4B1Q8NGF8 309 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 SYT11Q9BT88 431 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 VSX1Q9NZR4 365 aaPredicted RBP6.61□□□□□ -1.35
VPS53-204ENST00000437048 BOKQ9UMX3 212 aaPredicted RBP6.61□□□□□ -1.35
VPS53-204ENST00000437048 CHD5Q8TDI0 1954 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 C7orf72A4D263 438 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 SCO2O43819 266 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 PPP1R3DO95685 299 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 CLDN15P56746 228 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 Q7L0L9 218 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 SH3RF2Q8TEC5 729 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 TOX3O15405 576 aaPredicted RBP6.61□□□□□ -1.35
VPS53-204ENST00000437048 SP3Q02447 781 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 GDPD3Q7L5L3 318 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 PNPLA1Q8N8W4 532 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 ACOT4Q8N9L9 421 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 EXTL1Q92935 676 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 LMF1Q96S06 567 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 DUSP23Q9BVJ7 150 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 AOAHP28039 575 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 PTTG1IPP53801 180 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 SEMG2Q02383 582 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 PIK3IP1Q96FE7 263 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 RHOFQ9HBH0 211 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 GDE1Q9NZC3 331 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 FBXL2Q9UKC9 423 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 AKAP11Q9UKA4 1901 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 PDE6DO43924 150 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 SSTR2P30874 369 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 SUMO3P55854 103 aaPredicted RBP6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms