RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 SFRP5Q5T4F7 317 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 SIGIRRQ6IA17 410 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 OGFOD3Q6PK18 319 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 TRILQ7L0X0 811 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 ANKRD37Q7Z713 158 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 YRDCQ86U90 279 aaKnown RBP7.5□□□□□ -1.21
CD44-208ENST00000428726 BIVMQ86UB2 503 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 CD163Q86VB7 1156 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 D2HGDHQ8N465 521 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 ZNF680Q8NEM1 530 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 LRRC20Q8TCA0 184 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 ZNF837Q96EG3 531 aaPredicted RBP7.5□□□□□ -1.21
CD44-208ENST00000428726 GUCD1Q96NT3 240 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 GPX7Q96SL4 187 aaPredicted RBP7.5□□□□□ -1.21
CD44-208ENST00000428726 DDOQ99489 341 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 MNTQ99583 582 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 MARVELD1Q9BSK0 173 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 ABHD6Q9BV23 337 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 PTDSS2Q9BVG9 487 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 DEFB126Q9BYW3 111 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 PCED1AQ9H1Q7 454 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 CHRDQ9H2X0 955 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 ZNF160Q9HCG1 818 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 EXOSC3Q9NQT5 275 aaKnown RBP7.5□□□□□ -1.21
CD44-208ENST00000428726 PRR13Q9NZ81 148 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 PPP4R1LQ9P1A2 415 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 MRTO4Q9UKD2 239 aaKnown RBP7.5□□□□□ -1.21
CD44-208ENST00000428726 NPIPA5E9PKD4 350 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 RER1O15258 196 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 UPK3AO75631 287 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 TRAPPC6AO75865 159 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 WDPCPO95876 746 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 TCRBP04435 133 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 ALDOBP05062 364 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 ITGA5P08648 1049 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 PNLIPP16233 465 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 PGCP20142 388 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 DNASE1L1P49184 302 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 EPHA4P54764 986 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 HSF2Q03933 536 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 ESPL1Q14674 2120 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 FNDC7Q5VTL7 733 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 RPL22L1Q6P5R6 122 aaKnown RBP7.5□□□□□ -1.21
CD44-208ENST00000428726 NHLRC1Q6VVB1 395 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 Q6ZTK2 550 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 PPP1R3BQ86XI6 285 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 FTMTQ8N4E7 242 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 CHST4Q8NCG5 386 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 CADM4Q8NFZ8 388 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 LIPHQ8WWY8 451 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 RNF166Q96A37 237 aaPredicted RBP7.5□□□□□ -1.21
CD44-208ENST00000428726 WDR77Q9BQA1 342 aaPredicted RBP7.5□□□□□ -1.21
CD44-208ENST00000428726 ATG5Q9H1Y0 275 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 OR51J1Q9H342 316 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 NPIPA1Q9UND3 350 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 ZNF281Q9Y2X9 895 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 MRPS18BQ9Y676 258 aaKnown RBP7.5□□□□□ -1.21
CD44-208ENST00000428726 CADP27708 2225 aa7.5□□□□□ -1.21
CD44-208ENST00000428726 IGKV3D-11A0A0A0MRZ8 115 aa7.49□□□□□ -1.21
CD44-208ENST00000428726 A0A0G2JMM0 328 aa7.49□□□□□ -1.21
CD44-208ENST00000428726 A0A1W2PPB8 328 aa7.49□□□□□ -1.21
CD44-208ENST00000428726 A0A1W2PRS3 328 aa7.49□□□□□ -1.21
CD44-208ENST00000428726 KIR3DP1A8MWS1 328 aa7.49□□□□□ -1.21
CD44-208ENST00000428726 TSPAN2O60636 221 aa7.49□□□□□ -1.21
CD44-208ENST00000428726 ITGA10O75578 1167 aa7.49□□□□□ -1.21
CD44-208ENST00000428726 FAM157BP0CG42 384 aa7.49□□□□□ -1.21
CD44-208ENST00000428726 ABOP16442 354 aa7.49□□□□□ -1.21
CD44-208ENST00000428726 DNASE1P24855 282 aa7.49□□□□□ -1.21
CD44-208ENST00000428726 STOMP27105 288 aa7.49□□□□□ -1.21
CD44-208ENST00000428726 BTCP35070 178 aa7.49□□□□□ -1.21
CD44-208ENST00000428726 RAD52P43351 418 aa7.49□□□□□ -1.21
CD44-208ENST00000428726 ALKBH1Q13686 389 aaKnown RBP7.49□□□□□ -1.21
CD44-208ENST00000428726 MOGAT2Q3SYC2 334 aa7.49□□□□□ -1.21
CD44-208ENST00000428726 SLC36A2Q495M3 483 aa7.49□□□□□ -1.21
CD44-208ENST00000428726 SCGB2B2Q4G0G5 96 aa7.49□□□□□ -1.21
CD44-208ENST00000428726 GLYATL3Q5SZD4 288 aa7.49□□□□□ -1.21
CD44-208ENST00000428726 RAET1LQ5VY80 246 aa7.49□□□□□ -1.21
CD44-208ENST00000428726 ALKBH2Q6NS38 261 aa7.49□□□□□ -1.21
CD44-208ENST00000428726 ALKAL2Q6UX46 152 aa7.49□□□□□ -1.21
CD44-208ENST00000428726 HIST2H2ABQ8IUE6 130 aaPredicted RBP7.49□□□□□ -1.21
CD44-208ENST00000428726 YIPF5Q969M3 257 aa7.49□□□□□ -1.21
CD44-208ENST00000428726 SLC25A38Q96DW6 304 aa7.49□□□□□ -1.21
CD44-208ENST00000428726 MVB12AQ96EY5 273 aa7.49□□□□□ -1.21
CD44-208ENST00000428726 NMNAT2Q9BZQ4 307 aa7.49□□□□□ -1.21
CD44-208ENST00000428726 CHST6Q9GZX3 395 aa7.49□□□□□ -1.21
CD44-208ENST00000428726 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.49□□□□□ -1.21
CD44-208ENST00000428726 PTGES2Q9H7Z7 377 aa7.49□□□□□ -1.21
CD44-208ENST00000428726 ING4Q9UNL4 249 aa7.49□□□□□ -1.21
CD44-208ENST00000428726 B3GALT1Q9Y5Z6 326 aa7.49□□□□□ -1.21
CD44-208ENST00000428726 V9GY05 133 aa7.49□□□□□ -1.21
CD44-208ENST00000428726 CACNA1DQ01668 2161 aa7.49□□□□□ -1.21
CD44-208ENST00000428726 CSMD1Q96PZ7 3565 aa7.49□□□□□ -1.21
CD44-208ENST00000428726 PRSS37A4D1T9 235 aa7.49□□□□□ -1.21
CD44-208ENST00000428726 FRG2CA6NGY1 282 aa7.49□□□□□ -1.21
CD44-208ENST00000428726 TMEM200CA6NKL6 621 aa7.49□□□□□ -1.21
CD44-208ENST00000428726 IFITM5A6NNB3 132 aa7.49□□□□□ -1.21
CD44-208ENST00000428726 F5H5K5 113 aa7.49□□□□□ -1.21
CD44-208ENST00000428726 MPC2O95563 127 aa7.49□□□□□ -1.21
CD44-208ENST00000428726 DHFRP00374 187 aa7.49□□□□□ -1.21
CD44-208ENST00000428726 PRKACBP22694 351 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms