RNA–Protein interactions for RNA: ENST00000425436.7

SHOX2-202, Transcript of short stature homeobox 2, humanhuman

TSL 5 BASIC

Gene SHOX2, Length 1,513 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-202ENST00000425436 PRRG4Q9BZD6 226 aa13.86□□□□□ -0.19
SHOX2-202ENST00000425436 VSX1Q9NZR4 365 aaPredicted RBP13.86□□□□□ -0.19
SHOX2-202ENST00000425436 CLCF1Q9UBD9 225 aa13.86□□□□□ -0.19
SHOX2-202ENST00000425436 HDGFL3Q9Y3E1 203 aa13.86□□□□□ -0.19
SHOX2-202ENST00000425436 COL12A1Q99715 3063 aa13.86□□□□□ -0.19
SHOX2-202ENST00000425436 ARPC4-TTLL3A0A0A6YYG9 625 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 PRSS37A4D1T9 235 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 SLC35F4A4IF30 521 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 CD8B2A6NJW9 211 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 GPRIN2O60269 458 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 SERPINI2O75830 405 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 AQP8O94778 261 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 TFP02787 698 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 ENPP1P22413 925 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 TGM4P49221 684 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 ADORA2A-AS1P86434 159 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 OR7A5Q15622 319 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 ACKR1Q16570 336 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 TMEM211Q6ICI0 200 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 CCDC190Q86UF4 302 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 OR51L1Q8NGJ5 315 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 ZNF417Q8TAU3 575 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 ZNF519Q8TB69 540 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 UCN2Q96RP3 112 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 ZNF587Q96SQ5 575 aaPredicted RBP13.85□□□□□ -0.19
SHOX2-202ENST00000425436 KCNS3Q9BQ31 491 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 SLC30A2Q9BRI3 323 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 MARCH7Q9H992 704 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 SMURF1Q9HCE7 757 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 SRA1Q9HD15 236 aaKnown RBP13.85□□□□□ -0.19
SHOX2-202ENST00000425436 CHST11Q9NPF2 352 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 TIGARQ9NQ88 270 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 A0A0G2JNJ9 132 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 C11orf98E9PRG8 122 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 ZG16O60844 167 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 GATBO75879 557 aaKnown RBP13.85□□□□□ -0.19
SHOX2-202ENST00000425436 SULT1C4O75897 302 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 SYNGR4O95473 234 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 NAA10P41227 235 aaPredicted RBP13.85□□□□□ -0.19
SHOX2-202ENST00000425436 AGFG1P52594 562 aaKnown RBP13.85□□□□□ -0.19
SHOX2-202ENST00000425436 RAC3P60763 192 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 EGR3Q06889 387 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 MZT2AQ6P582 158 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 DNM1P34Q6PK57 102 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 ARL9Q6T311 187 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 Q6ZNX1 250 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 HDDC2Q7Z4H3 204 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 FAM220AQ7Z4H9 259 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 PXKQ7Z7A4 578 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 OR6V1Q8N148 313 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 NAXEQ8NCW5 288 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 ABHD4Q8TB40 342 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 CHPT1Q8WUD6 406 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 ACOT12Q8WYK0 555 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 WNT2BQ93097 391 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 INTS12Q96CB8 462 aaKnown RBP13.85□□□□□ -0.19
SHOX2-202ENST00000425436 ADAD1Q96M93 576 aaKnown RBP13.85□□□□□ -0.19
SHOX2-202ENST00000425436 BARHL1Q9BZE3 327 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 TPK1Q9H3S4 243 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 RERGLQ9H628 205 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 WDR76Q9H967 626 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 PAQR5Q9NXK6 330 aaPredicted RBP13.85□□□□□ -0.19
SHOX2-202ENST00000425436 Q9UFV3 132 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 MCTS1Q9ULC4 181 aaKnown RBP13.85□□□□□ -0.19
SHOX2-202ENST00000425436 TRAPPC4Q9Y296 219 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 CMAHPQ9Y471 501 aa13.85□□□□□ -0.19
SHOX2-202ENST00000425436 MBD3L4A6NDZ8 208 aaPredicted RBP13.84□□□□□ -0.19
SHOX2-202ENST00000425436 MBD3L3A6NE82 208 aaPredicted RBP13.84□□□□□ -0.19
SHOX2-202ENST00000425436 MBD3L5A6NJ08 208 aaPredicted RBP13.84□□□□□ -0.19
SHOX2-202ENST00000425436 LIPT2A6NK58 231 aa13.84□□□□□ -0.19
SHOX2-202ENST00000425436 ZNF814B7Z6K7 855 aa13.84□□□□□ -0.19
SHOX2-202ENST00000425436 AGFG2O95081 481 aa13.84□□□□□ -0.19
SHOX2-202ENST00000425436 PMS2P2O95744 297 aa13.84□□□□□ -0.19
SHOX2-202ENST00000425436 MYL9P24844 172 aa13.84□□□□□ -0.19
SHOX2-202ENST00000425436 PER3P56645 1201 aa13.84□□□□□ -0.19
SHOX2-202ENST00000425436 CSNK2A1P68400 391 aaPredicted RBP13.84□□□□□ -0.19
SHOX2-202ENST00000425436 FOXF2Q12947 444 aa13.84□□□□□ -0.19
SHOX2-202ENST00000425436 HNRNPA0Q13151 305 aaKnown RBP13.84□□□□□ -0.19
SHOX2-202ENST00000425436 ZNF239Q16600 458 aaKnown RBP13.84□□□□□ -0.19
SHOX2-202ENST00000425436 DDI2Q5TDH0 399 aa13.84□□□□□ -0.19
SHOX2-202ENST00000425436 TMEM91Q6ZNR0 172 aa13.84□□□□□ -0.19
SHOX2-202ENST00000425436 TIGD4Q8IY51 512 aa13.84□□□□□ -0.19
SHOX2-202ENST00000425436 GCNT2Q8N0V5 402 aa13.84□□□□□ -0.19
SHOX2-202ENST00000425436 PARP16Q8N5Y8 322 aa13.84□□□□□ -0.19
SHOX2-202ENST00000425436 MBD3L2Q8NHZ7 208 aaPredicted RBP13.84□□□□□ -0.19
SHOX2-202ENST00000425436 ASB17Q8WXJ9 295 aa13.84□□□□□ -0.19
SHOX2-202ENST00000425436 RND1Q92730 232 aa13.84□□□□□ -0.19
SHOX2-202ENST00000425436 CPNE4Q96A23 557 aaPredicted RBP13.84□□□□□ -0.19
SHOX2-202ENST00000425436 SMIM19Q96E16 107 aa13.84□□□□□ -0.19
SHOX2-202ENST00000425436 PELI1Q96FA3 418 aa13.84□□□□□ -0.19
SHOX2-202ENST00000425436 INTS14Q96SY0 518 aa13.84□□□□□ -0.19
SHOX2-202ENST00000425436 CCDC32Q9BV29 185 aa13.84□□□□□ -0.19
SHOX2-202ENST00000425436 ST6GALNAC2Q9UJ37 374 aa13.84□□□□□ -0.19
SHOX2-202ENST00000425436 CLEC4AQ9UMR7 237 aa13.84□□□□□ -0.19
SHOX2-202ENST00000425436 B9D1Q9UPM9 204 aa13.84□□□□□ -0.19
SHOX2-202ENST00000425436 A0A1W2PNV4 684 aa13.83□□□□□ -0.2
SHOX2-202ENST00000425436 MS4A18H0YCH9 400 aa13.83□□□□□ -0.2
SHOX2-202ENST00000425436 SMAD9O15198 467 aaKnown RBP13.83□□□□□ -0.2
SHOX2-202ENST00000425436 RGS5O15539 181 aa13.83□□□□□ -0.2
SHOX2-202ENST00000425436 SELENOFO60613 162 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms