RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 DAPL1A0PJW8 107 aa12.5□□□□□ -0.41
SF3B1-204ENST00000414963 ZNF670-ZNF695F2Z2N8 137 aa12.5□□□□□ -0.41
SF3B1-204ENST00000414963 DVL2O14641 736 aa12.5□□□□□ -0.41
SF3B1-204ENST00000414963 PHYHO14832 338 aa12.5□□□□□ -0.41
SF3B1-204ENST00000414963 PSKH1P11801 424 aa12.5□□□□□ -0.41
SF3B1-204ENST00000414963 PCMT1P22061 227 aa12.5□□□□□ -0.41
SF3B1-204ENST00000414963 HCCSP53701 268 aa12.5□□□□□ -0.41
SF3B1-204ENST00000414963 ZNF85Q03923 595 aa12.5□□□□□ -0.41
SF3B1-204ENST00000414963 TBCEQ15813 527 aaPredicted RBP12.5□□□□□ -0.41
SF3B1-204ENST00000414963 IGFBP7Q16270 282 aa12.5□□□□□ -0.41
SF3B1-204ENST00000414963 ZNF684Q5T5D7 378 aa12.5□□□□□ -0.41
SF3B1-204ENST00000414963 MTFR2Q6P444 385 aa12.5□□□□□ -0.41
SF3B1-204ENST00000414963 ZNF813Q6ZN06 617 aa12.5□□□□□ -0.41
SF3B1-204ENST00000414963 RHOUQ7L0Q8 258 aa12.5□□□□□ -0.41
SF3B1-204ENST00000414963 DPPA2Q7Z7J5 298 aa12.5□□□□□ -0.41
SF3B1-204ENST00000414963 LIX1LQ8IVB5 337 aa12.5□□□□□ -0.41
SF3B1-204ENST00000414963 CCDC36Q8IYA8 594 aa12.5□□□□□ -0.41
SF3B1-204ENST00000414963 NANOGP1Q8N7R0 232 aa12.5□□□□□ -0.41
SF3B1-204ENST00000414963 ZNF485Q8NCK3 441 aa12.5□□□□□ -0.41
SF3B1-204ENST00000414963 OR1K1Q8NGR3 316 aa12.5□□□□□ -0.41
SF3B1-204ENST00000414963 SMAP2Q8WU79 429 aaPredicted RBP12.5□□□□□ -0.41
SF3B1-204ENST00000414963 ZNF416Q9BWM5 594 aa12.5□□□□□ -0.41
SF3B1-204ENST00000414963 CDADC1Q9BWV3 514 aa12.5□□□□□ -0.41
SF3B1-204ENST00000414963 CCDC90BQ9GZT6 254 aa12.5□□□□□ -0.41
SF3B1-204ENST00000414963 CHCHD3Q9NX63 227 aaKnown RBP12.5□□□□□ -0.41
SF3B1-204ENST00000414963 CLEC2DQ9UHP7 191 aa12.5□□□□□ -0.41
SF3B1-204ENST00000414963 LAMP5Q9UJQ1 280 aa12.5□□□□□ -0.41
SF3B1-204ENST00000414963 COPS3Q9UNS2 423 aa12.5□□□□□ -0.41
SF3B1-204ENST00000414963 ERGIC3Q9Y282 383 aa12.5□□□□□ -0.41
SF3B1-204ENST00000414963 KLHDC2Q9Y2U9 406 aa12.5□□□□□ -0.41
SF3B1-204ENST00000414963 SNX5Q9Y5X3 404 aa12.5□□□□□ -0.41
SF3B1-204ENST00000414963 FARS2O95363 451 aaKnown RBP12.49□□□□□ -0.41
SF3B1-204ENST00000414963 PRB1P04280 392 aa12.49□□□□□ -0.41
SF3B1-204ENST00000414963 SPARCP09486 303 aa12.49□□□□□ -0.41
SF3B1-204ENST00000414963 B4GALT1P15291 398 aa12.49□□□□□ -0.41
SF3B1-204ENST00000414963 BMP5P22003 454 aa12.49□□□□□ -0.41
SF3B1-204ENST00000414963 GNLYP22749 145 aa12.49□□□□□ -0.41
SF3B1-204ENST00000414963 CHRNB4P30926 498 aa12.49□□□□□ -0.41
SF3B1-204ENST00000414963 PCBD1P61457 104 aa12.49□□□□□ -0.41
SF3B1-204ENST00000414963 ROM1Q03395 351 aa12.49□□□□□ -0.41
SF3B1-204ENST00000414963 EMX1Q04741 257 aaPredicted RBP12.49□□□□□ -0.41
SF3B1-204ENST00000414963 EGR3Q06889 387 aa12.49□□□□□ -0.41
SF3B1-204ENST00000414963 AQP6Q13520 282 aa12.49□□□□□ -0.41
SF3B1-204ENST00000414963 GABRA6Q16445 453 aa12.49□□□□□ -0.41
SF3B1-204ENST00000414963 CDONQ4KMG0 1287 aa12.49□□□□□ -0.41
SF3B1-204ENST00000414963 C4orf17Q53FE4 359 aa12.49□□□□□ -0.41
SF3B1-204ENST00000414963 C1QTNF12Q5T7M4 302 aa12.49□□□□□ -0.41
SF3B1-204ENST00000414963 OTPQ5XKR4 325 aa12.49□□□□□ -0.41
SF3B1-204ENST00000414963 OR7E24Q6IFN5 339 aa12.49□□□□□ -0.41
SF3B1-204ENST00000414963 DEGS2Q6QHC5 323 aa12.49□□□□□ -0.41
SF3B1-204ENST00000414963 NCCRP1Q6ZVX7 275 aaPredicted RBP12.49□□□□□ -0.41
SF3B1-204ENST00000414963 KCTD20Q7Z5Y7 419 aa12.49□□□□□ -0.41
SF3B1-204ENST00000414963 LHFPL3Q86UP9 236 aa12.49□□□□□ -0.41
SF3B1-204ENST00000414963 SKA3Q8IX90 412 aa12.49□□□□□ -0.41
SF3B1-204ENST00000414963 OR2AJ1Q8NGZ0 328 aa12.49□□□□□ -0.41
SF3B1-204ENST00000414963 OR52N1Q8NH53 320 aa12.49□□□□□ -0.41
SF3B1-204ENST00000414963 ST7LQ8TDW4 575 aa12.49□□□□□ -0.41
SF3B1-204ENST00000414963 FBXO17Q96EF6 278 aa12.49□□□□□ -0.41
SF3B1-204ENST00000414963 MRPL48Q96GC5 212 aaKnown RBP12.49□□□□□ -0.41
SF3B1-204ENST00000414963 ABHD6Q9BV23 337 aa12.49□□□□□ -0.41
SF3B1-204ENST00000414963 HDHD5Q9BXW7 423 aa12.49□□□□□ -0.41
SF3B1-204ENST00000414963 MRPS26Q9BYN8 205 aaKnown RBP12.49□□□□□ -0.41
SF3B1-204ENST00000414963 ACOT13Q9NPJ3 140 aa12.49□□□□□ -0.41
SF3B1-204ENST00000414963 ELOVL5Q9NYP7 299 aa12.49□□□□□ -0.41
SF3B1-204ENST00000414963 CAB39Q9Y376 341 aaPredicted RBP12.49□□□□□ -0.41
SF3B1-204ENST00000414963 NBASA2RRP1 2371 aa12.48□□□□□ -0.41
SF3B1-204ENST00000414963 FREM1Q5H8C1 2179 aa12.48□□□□□ -0.41
SF3B1-204ENST00000414963 LRRTM2O43300 516 aa12.48□□□□□ -0.41
SF3B1-204ENST00000414963 SULT1C4O75897 302 aa12.48□□□□□ -0.41
SF3B1-204ENST00000414963 MMP7P09237 267 aaPredicted RBP12.48□□□□□ -0.41
SF3B1-204ENST00000414963 JUNBP17275 347 aaPredicted RBP12.48□□□□□ -0.41
SF3B1-204ENST00000414963 PSMB1P20618 241 aaKnown RBP12.48□□□□□ -0.41
SF3B1-204ENST00000414963 CAPZA2P47755 286 aa12.48□□□□□ -0.41
SF3B1-204ENST00000414963 ACTA2P62736 377 aa12.48□□□□□ -0.41
SF3B1-204ENST00000414963 ACTG2P63267 376 aa12.48□□□□□ -0.41
SF3B1-204ENST00000414963 ADORA2A-AS1P86434 159 aa12.48□□□□□ -0.41
SF3B1-204ENST00000414963 SLC25A35Q3KQZ1 300 aa12.48□□□□□ -0.41
SF3B1-204ENST00000414963 SFRP5Q5T4F7 317 aa12.48□□□□□ -0.41
SF3B1-204ENST00000414963 C9orf135Q5VTT2 229 aa12.48□□□□□ -0.41
SF3B1-204ENST00000414963 XAF1Q6GPH4 301 aa12.48□□□□□ -0.41
SF3B1-204ENST00000414963 KLHL24Q6TFL4 600 aa12.48□□□□□ -0.41
SF3B1-204ENST00000414963 ZNF322Q6U7Q0 402 aaPredicted RBP12.48□□□□□ -0.41
SF3B1-204ENST00000414963 TMPRSS11AQ6ZMR5 421 aa12.48□□□□□ -0.41
SF3B1-204ENST00000414963 SSX6Q7RTT6 188 aa12.48□□□□□ -0.41
SF3B1-204ENST00000414963 DCXRQ7Z4W1 244 aa12.48□□□□□ -0.41
SF3B1-204ENST00000414963 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.48□□□□□ -0.41
SF3B1-204ENST00000414963 SYS1Q8N2H4 156 aa12.48□□□□□ -0.41
SF3B1-204ENST00000414963 LRRC18Q8N456 261 aa12.48□□□□□ -0.41
SF3B1-204ENST00000414963 C17orf78Q8N4C9 275 aa12.48□□□□□ -0.41
SF3B1-204ENST00000414963 KLHL36Q8N4N3 616 aa12.48□□□□□ -0.41
SF3B1-204ENST00000414963 RFLNBQ8N5W9 214 aa12.48□□□□□ -0.41
SF3B1-204ENST00000414963 RELL2Q8NC24 303 aaPredicted RBP12.48□□□□□ -0.41
SF3B1-204ENST00000414963 GJC3Q8NFK1 279 aa12.48□□□□□ -0.41
SF3B1-204ENST00000414963 THEM6Q8WUY1 208 aa12.48□□□□□ -0.41
SF3B1-204ENST00000414963 RNF133Q8WVZ7 376 aa12.48□□□□□ -0.41
SF3B1-204ENST00000414963 ASB5Q8WWX0 329 aa12.48□□□□□ -0.41
SF3B1-204ENST00000414963 FCGR1BQ92637 280 aa12.48□□□□□ -0.41
SF3B1-204ENST00000414963 HTRA1Q92743 480 aa12.48□□□□□ -0.41
SF3B1-204ENST00000414963 MAP6Q96JE9 813 aa12.48□□□□□ -0.41
SF3B1-204ENST00000414963 TBX5Q99593 518 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms