RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 INPP5JQ15735 1006 aaPredicted RBP5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 FAM189A2Q15884 450 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 RHOUQ7L0Q8 258 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 PRSS41Q7RTY9 318 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 OR4N2Q8NGD1 307 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 C16orf52Q8NHV5 167 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 PCNPQ8WW12 178 aaKnown RBP5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 SAT2Q96F10 170 aaPredicted RBP5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 LRRC46Q96FV0 321 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 BMFQ96LC9 184 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 SLC6A17Q9H1V8 727 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 OR10A5Q9H207 317 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 RAB22AQ9UL26 194 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 MMACHCQ9Y4U1 282 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 POMT1Q9Y6A1 747 aa5.17□□□□□ -1.58
CCDC88A-203ENST00000412148 PRSS37A4D1T9 235 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 FITM1A5D6W6 292 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 ZNF736B4DX44 427 aaPredicted RBP5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 H0YIG0 161 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 TGFBR3LH3BV60 316 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 DCTN6O00399 190 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 HSD11B1P28845 292 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 CD34P28906 385 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 CASRP41180 1078 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 QRFPP83859 136 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 MC2RQ01718 297 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 ID2Q02363 134 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 ZP4Q12836 540 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 TSC22D1Q15714 1073 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 NKPD1Q17RQ9 610 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 ZNF260Q3ZCT1 412 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 ACTBL2Q562R1 376 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 PSRC1Q6PGN9 363 aaPredicted RBP5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 ZNF704Q6ZNC4 412 aaPredicted RBP5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 OR2W3Q7Z3T1 314 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 CACUL1Q86Y37 369 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 GALNT16Q8N428 558 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 FRMD1Q8N878 549 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 BPIFCQ8NFQ6 507 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 OR5T3Q8NGG3 340 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 OR4C3Q8NH37 302 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 OR14C36Q8NHC7 312 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 STK35Q8TDR2 534 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 SLC46A1Q96NT5 459 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 MOGAT1Q96PD6 335 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 DGAT2Q96PD7 388 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 CCDC3Q9BQI4 270 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 SEC11CQ9BY50 192 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 TTTY10Q9BZA0 68 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 RNF122Q9H9V4 155 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 TMEM138Q9NPI0 162 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 CPNE7Q9UBL6 633 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 GMEB2Q9UKD1 530 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 B9D1Q9UPM9 204 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 KIF26BQ2KJY2 2108 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 ARHGEF17Q96PE2 2063 aaPredicted RBP5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 ADAMTS20P59510 1910 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 TCRBV16S1A1N1A0A5B0 115 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 LINC01553A4QN01 128 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 POM121BA6NF01 834 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 LGALS8O00214 317 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 MAS1P04201 325 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 IFNA4P05014 189 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 PROS1P07225 676 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 CRABP1P29762 137 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 ACTR1BP42025 376 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 STARP49675 285 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 ACTR1AP61163 376 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 RPL27P61353 136 aaKnown RBP5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 PMPCAQ10713 525 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 PLA2G7Q13093 441 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 NR0B2Q15466 257 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 ARHGAP40Q5TG30 622 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 TMEM244Q5VVB8 128 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 YOD1Q5VVQ6 348 aaPredicted RBP5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 C11orf88Q6PI97 169 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 PAPD4Q6PIY7 484 aaKnown RBP5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 RAB11FIP2Q7L804 512 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 OOSP2Q86WS3 158 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 SPAG16Q8N0X2 631 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 TMEM185AQ8NFB2 350 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 DUSP19Q8WTR2 217 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 ZBTB8AQ96BR9 441 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 ARSGQ96EG1 525 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 PIK3IP1Q96FE7 263 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 CDCA3Q99618 268 aaPredicted RBP5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 PHB2Q99623 299 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 NUDT9Q9BW91 350 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 C1QTNF6Q9BXI9 259 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 CHST6Q9GZX3 395 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 CHRDQ9H2X0 955 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 TXNIPQ9H3M7 391 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 MMP26Q9NRE1 261 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 PRTFDC1Q9NRG1 225 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 HPF1Q9NWY4 346 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 TAS2R3Q9NYW6 316 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 LRIT1Q9P2V4 623 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 DNAJB11Q9UBS4 358 aa5.16□□□□□ -1.58
CCDC88A-203ENST00000412148 HHLA2Q9UM44 414 aa5.16□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms