RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 FBXL2Q9UKC9 423 aa12.02□□□□□ -0.49
VPS54-203ENST00000409558 LOC107986453A0A1B0GWG9 222 aa12.01□□□□□ -0.49
VPS54-203ENST00000409558 ZSCAN5BA6NJL1 495 aa12.01□□□□□ -0.49
VPS54-203ENST00000409558 ZNF35P13682 527 aa12.01□□□□□ -0.49
VPS54-203ENST00000409558 MAPK3P27361 379 aaPredicted RBP12.01□□□□□ -0.49
VPS54-203ENST00000409558 ZNF680Q8NEM1 530 aa12.01□□□□□ -0.49
VPS54-203ENST00000409558 MAFIPQ8WZ33 124 aa12.01□□□□□ -0.49
VPS54-203ENST00000409558 RNF166Q96A37 237 aaPredicted RBP12.01□□□□□ -0.49
VPS54-203ENST00000409558 ZNF436Q9C0F3 470 aaPredicted RBP12.01□□□□□ -0.49
VPS54-203ENST00000409558 OCIAD1Q9NX40 245 aa12.01□□□□□ -0.49
VPS54-203ENST00000409558 GABARAPH6UMI1 98 aa12.01□□□□□ -0.49
VPS54-203ENST00000409558 M0R233 179 aa12.01□□□□□ -0.49
VPS54-203ENST00000409558 NUPL2O15504 423 aaKnown RBP12.01□□□□□ -0.49
VPS54-203ENST00000409558 GLB1P16278 677 aa12.01□□□□□ -0.49
VPS54-203ENST00000409558 VAMP1P23763 118 aa12.01□□□□□ -0.49
VPS54-203ENST00000409558 MYO7BQ6PIF6 2116 aa12.01□□□□□ -0.49
VPS54-203ENST00000409558 COX15Q7KZN9 410 aa12.01□□□□□ -0.49
VPS54-203ENST00000409558 BIVMQ86UB2 503 aa12.01□□□□□ -0.49
VPS54-203ENST00000409558 GALNT6Q8NCL4 622 aa12.01□□□□□ -0.49
VPS54-203ENST00000409558 OR1J4Q8NGS1 313 aa12.01□□□□□ -0.49
VPS54-203ENST00000409558 NUDCD2Q8WVJ2 157 aa12.01□□□□□ -0.49
VPS54-203ENST00000409558 PTGES2Q9H7Z7 377 aa12.01□□□□□ -0.49
VPS54-203ENST00000409558 RIF1Q5UIP0 2472 aaKnown RBP12.01□□□□□ -0.49
VPS54-203ENST00000409558 ALG1L2C9J202 215 aa12.01□□□□□ -0.49
VPS54-203ENST00000409558 ZNF501Q96CX3 271 aaPredicted RBP12.01□□□□□ -0.49
VPS54-203ENST00000409558 OR2M2Q96R28 347 aa12.01□□□□□ -0.49
VPS54-203ENST00000409558 GPER1Q99527 375 aa12.01□□□□□ -0.49
VPS54-203ENST00000409558 PELOQ9BRX2 385 aaKnown RBP12.01□□□□□ -0.49
VPS54-203ENST00000409558 GON7Q9BXV9 100 aa12.01□□□□□ -0.49
VPS54-203ENST00000409558 BANF2Q9H503 90 aa12.01□□□□□ -0.49
VPS54-203ENST00000409558 STEAP1Q9UHE8 339 aa12.01□□□□□ -0.49
VPS54-203ENST00000409558 MRPS17Q9Y2R5 130 aaKnown RBP12.01□□□□□ -0.49
VPS54-203ENST00000409558 MRPS18BQ9Y676 258 aaKnown RBP12.01□□□□□ -0.49
VPS54-203ENST00000409558 TMEM14AQ9Y6G1 99 aa12.01□□□□□ -0.49
VPS54-203ENST00000409558 L7N2F9 121 aa12□□□□□ -0.49
VPS54-203ENST00000409558 ACOT7O00154 380 aa12□□□□□ -0.49
VPS54-203ENST00000409558 ALX3O95076 343 aa12□□□□□ -0.49
VPS54-203ENST00000409558 ZNF250P15622 560 aa12□□□□□ -0.49
VPS54-203ENST00000409558 PRSS3P35030 304 aa12□□□□□ -0.49
VPS54-203ENST00000409558 GGTLC2Q14390 218 aa12□□□□□ -0.49
VPS54-203ENST00000409558 KCTD18Q6PI47 426 aaPredicted RBP12□□□□□ -0.49
VPS54-203ENST00000409558 GALNTL5Q7Z4T8 443 aa12□□□□□ -0.49
VPS54-203ENST00000409558 ZNF679Q8IYX0 411 aa12□□□□□ -0.49
VPS54-203ENST00000409558 HAVCR1Q96D42 359 aa12□□□□□ -0.49
VPS54-203ENST00000409558 GNRHR2Q96P88 292 aa12□□□□□ -0.49
VPS54-203ENST00000409558 OR8B4Q96RC9 309 aa12□□□□□ -0.49
VPS54-203ENST00000409558 NIPAL2Q9H841 368 aa12□□□□□ -0.49
VPS54-203ENST00000409558 EPHA6Q9UF33 1036 aa12□□□□□ -0.49
VPS54-203ENST00000409558 MOKQ9UQ07 419 aa12□□□□□ -0.49
VPS54-203ENST00000409558 PLEKHA6Q9Y2H5 1048 aa12□□□□□ -0.49
VPS54-203ENST00000409558 PLPP3O14495 311 aa12□□□□□ -0.49
VPS54-203ENST00000409558 SIGLEC6O43699 453 aa12□□□□□ -0.49
VPS54-203ENST00000409558 CREBL2O60519 120 aaPredicted RBP12□□□□□ -0.49
VPS54-203ENST00000409558 TSPAN2O60636 221 aa12□□□□□ -0.49
VPS54-203ENST00000409558 ABHD16AO95870 558 aa12□□□□□ -0.49
VPS54-203ENST00000409558 ABOP16442 354 aa12□□□□□ -0.49
VPS54-203ENST00000409558 PI3P19957 117 aa12□□□□□ -0.49
VPS54-203ENST00000409558 GALP22466 123 aa12□□□□□ -0.49
VPS54-203ENST00000409558 OR3A3P47888 321 aa12□□□□□ -0.49
VPS54-203ENST00000409558 ZNF41P51814 821 aaPredicted RBP12□□□□□ -0.49
VPS54-203ENST00000409558 EXOSC2Q13868 293 aaKnown RBP12□□□□□ -0.49
VPS54-203ENST00000409558 KCTD9Q7L273 389 aa12□□□□□ -0.49
VPS54-203ENST00000409558 LRRTM1Q86UE6 522 aa12□□□□□ -0.49
VPS54-203ENST00000409558 SLC41A2Q96JW4 573 aa12□□□□□ -0.49
VPS54-203ENST00000409558 SLC6A7Q99884 636 aa12□□□□□ -0.49
VPS54-203ENST00000409558 PDCD10Q9BUL8 212 aa12□□□□□ -0.49
VPS54-203ENST00000409558 SLC19A3Q9BZV2 496 aa12□□□□□ -0.49
VPS54-203ENST00000409558 ARL6Q9H0F7 186 aa12□□□□□ -0.49
VPS54-203ENST00000409558 PRR13Q9NZ81 148 aa12□□□□□ -0.49
VPS54-203ENST00000409558 TMEM212A6NML5 194 aa12□□□□□ -0.49
VPS54-203ENST00000409558 F5H5K5 113 aa12□□□□□ -0.49
VPS54-203ENST00000409558 SPDEFO95238 335 aa12□□□□□ -0.49
VPS54-203ENST00000409558 SLC6A8P48029 635 aa12□□□□□ -0.49
VPS54-203ENST00000409558 ARHGDIBP52566 201 aa12□□□□□ -0.49
VPS54-203ENST00000409558 AP3S2P59780 193 aa12□□□□□ -0.49
VPS54-203ENST00000409558 CDNFQ49AH0 187 aa12□□□□□ -0.49
VPS54-203ENST00000409558 GRINAQ7Z429 371 aa12□□□□□ -0.49
VPS54-203ENST00000409558 MIB2Q96AX9 1013 aa12□□□□□ -0.49
VPS54-203ENST00000409558 DEFB126Q9BYW3 111 aa12□□□□□ -0.49
VPS54-203ENST00000409558 MMACHCQ9Y4U1 282 aa12□□□□□ -0.49
VPS54-203ENST00000409558 CACNA1HO95180 2353 aa12□□□□□ -0.49
VPS54-203ENST00000409558 VSTM2BA6NLU5 285 aa12□□□□□ -0.49
VPS54-203ENST00000409558 CTAG2O75638 210 aa12□□□□□ -0.49
VPS54-203ENST00000409558 BTG1P62324 171 aa12□□□□□ -0.49
VPS54-203ENST00000409558 SGCBQ16585 318 aa12□□□□□ -0.49
VPS54-203ENST00000409558 GPR139Q6DWJ6 353 aa12□□□□□ -0.49
VPS54-203ENST00000409558 PLXDC2Q6UX71 529 aa12□□□□□ -0.49
VPS54-203ENST00000409558 PMM1Q92871 262 aa12□□□□□ -0.49
VPS54-203ENST00000409558 MR1Q95460 341 aa12□□□□□ -0.49
VPS54-203ENST00000409558 ADAM19Q9H013 955 aa12□□□□□ -0.49
VPS54-203ENST00000409558 TNRC18O15417 2968 aaPredicted RBP11.99□□□□□ -0.49
VPS54-203ENST00000409558 UBE2QL1A1L167 161 aa11.99□□□□□ -0.49
VPS54-203ENST00000409558 GGT3PA6NGU5 568 aa11.99□□□□□ -0.49
VPS54-203ENST00000409558 CLRN1P58418 232 aa11.99□□□□□ -0.49
VPS54-203ENST00000409558 GPR85P60893 370 aa11.99□□□□□ -0.49
VPS54-203ENST00000409558 ABHD12BQ7Z5M8 362 aaPredicted RBP11.99□□□□□ -0.49
VPS54-203ENST00000409558 CDH24Q86UP0 819 aa11.99□□□□□ -0.49
VPS54-203ENST00000409558 OR51E1Q8TCB6 317 aa11.99□□□□□ -0.49
VPS54-203ENST00000409558 WDR77Q9BQA1 342 aaPredicted RBP11.99□□□□□ -0.49
VPS54-203ENST00000409558 TXNIPQ9H3M7 391 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms