RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 OR6K2Q8NGY2 324 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 FAM172AQ8WUF8 416 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 NELFBQ8WX92 580 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 NEUROG1Q92886 237 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 STMN2Q93045 179 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 ITCHQ96J02 903 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 RCHY1Q96PM5 261 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 OR51B5Q9H339 312 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 ARMC7Q9H6L4 198 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 EML4Q9HC35 981 aaKnown RBP3.41□□□□□ -1.86
HMGB1-204ENST00000399489 ZBTB20Q9HC78 741 aaPredicted RBP3.41□□□□□ -1.86
HMGB1-204ENST00000399489 THUMPD1Q9NXG2 353 aaKnown RBP3.41□□□□□ -1.86
HMGB1-204ENST00000399489 CIDEBQ9UHD4 219 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 KCNG2Q9UJ96 466 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 CLEC4EQ9ULY5 219 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 INSL5Q9Y5Q6 135 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 STK36Q9NRP7 1315 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 CNTNAP1P78357 1384 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 ZNF518AQ6AHZ1 1483 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 MLH3Q9UHC1 1453 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 CPS1P31327 1500 aa3.4□□□□□ -1.86
HMGB1-204ENST00000399489 DIP2CQ9Y2E4 1556 aa3.4□□□□□ -1.86
HMGB1-204ENST00000399489 RAPGEF6Q8TEU7 1601 aa3.4□□□□□ -1.86
HMGB1-204ENST00000399489 EVPLQ92817 2033 aa3.4□□□□□ -1.86
HMGB1-204ENST00000399489 IGLV5-45A0A087WSX0 123 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 A0A1B0GW55 424 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 KRTAP9-6A8MVA2 160 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 ERVV-2B6SEH9 535 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 SULT1C2O00338 296 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 SOX15O60248 233 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 CLDN11O75508 207 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 EEDO75530 441 aaKnown RBP3.4□□□□□ -1.87
HMGB1-204ENST00000399489 TDP2O95551 362 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 WNT2P09544 360 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 ACSM4P0C7M7 580 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 DUX4L2P0CJ85 424 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 DUX4L3P0CJ86 424 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 DUX4L4P0CJ87 422 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 DUX4L5P0CJ88 424 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 DUX4L6P0CJ89 424 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 DUX4L7P0CJ90 424 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 TGFBR2P37173 567 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 DDOSTP39656 456 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 LIM2P55344 173 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 PEX3P56589 373 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 HILS1P60008 231 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 RND3P61587 244 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 C2orf54Q08AI8 447 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 MGAT3Q09327 533 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 Q0VFX4 171 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 SMCO1Q147U7 214 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 P2RY6Q15077 328 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 PON3Q15166 354 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 GUK1Q16774 197 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 SLC36A2Q495M3 483 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 COX19Q49B96 90 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 METTL21CQ5VZV1 264 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 DUPD1Q68J44 220 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 DUX4L9Q6RFH8 374 aaPredicted RBP3.4□□□□□ -1.87
HMGB1-204ENST00000399489 STOX1Q6ZVD7 989 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 COX15Q7KZN9 410 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 SSX7Q7RTT5 188 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 ABHD12Q8N2K0 398 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 LRRC52Q8N7C0 313 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 ZNF441Q8N8Z8 693 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 OR4D10Q8NGI6 311 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 OR9A4Q8NGU2 314 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 ITFG1Q8TB96 612 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 FNDC8Q8TC99 324 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 RNASEH2CQ8TDP1 164 aaKnown RBP3.4□□□□□ -1.87
HMGB1-204ENST00000399489 ZNRF4Q8WWF5 429 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 AP3S1Q92572 193 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 DGCR14Q96DF8 476 aaKnown RBP3.4□□□□□ -1.87
HMGB1-204ENST00000399489 WDR34Q96EX3 536 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 MBOAT7Q96N66 472 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 MS4A4EQ96PG1 132 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 TBX15Q96SF7 602 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 RBBP8Q99708 897 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 TRIM51Q9BSJ1 452 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 CABLES2Q9BTV7 478 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 TMEM59Q9BXS4 323 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 CWH43Q9H720 699 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 FKRPQ9H9S5 495 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 ISYNA1Q9NPH2 558 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 NLE1Q9NVX2 485 aaPredicted RBP3.4□□□□□ -1.87
HMGB1-204ENST00000399489 MCUBQ9NWR8 336 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 CLN6Q9NWW5 311 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 CMTM6Q9NX76 183 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 TAS2R16Q9NYV7 291 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 DUX4Q9UBX2 424 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 KLK11Q9UBX7 282 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 ENOPH1Q9UHY7 261 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 PPP1R3CQ9UQK1 317 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 SLC22A13Q9Y226 551 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 CSNK1G3Q9Y6M4 447 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 MAP3K5Q99683 1374 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 PTPRKQ15262 1439 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 SHANK2Q9UPX8 1470 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 SAMD9Q5K651 1589 aa3.4□□□□□ -1.87
HMGB1-204ENST00000399489 IGHV4-61A0A0C4DH41 118 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms