RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 EIF4E3Q8N5X7 224 aaKnown RBP8.49□□□□□ -1.05
COL28A1-201ENST00000399429 PIK3IP1Q96FE7 263 aa8.49□□□□□ -1.05
COL28A1-201ENST00000399429 PELI2Q9HAT8 420 aa8.49□□□□□ -1.05
COL28A1-201ENST00000399429 ICKQ9UPZ9 632 aa8.49□□□□□ -1.05
COL28A1-201ENST00000399429 CSTBP04080 98 aaKnown RBP8.49□□□□□ -1.05
COL28A1-201ENST00000399429 CALCRP30988 508 aa8.49□□□□□ -1.05
COL28A1-201ENST00000399429 DHPSP49366 369 aaPredicted RBP8.49□□□□□ -1.05
COL28A1-201ENST00000399429 DIO1P49895 249 aa8.49□□□□□ -1.05
COL28A1-201ENST00000399429 RAB11AP62491 216 aa8.49□□□□□ -1.05
COL28A1-201ENST00000399429 RPL23AP62750 156 aaKnown RBP8.49□□□□□ -1.05
COL28A1-201ENST00000399429 PMPCAQ10713 525 aa8.49□□□□□ -1.05
COL28A1-201ENST00000399429 DUSP5Q16690 384 aa8.49□□□□□ -1.05
COL28A1-201ENST00000399429 LY6G5CQ5SRR4 150 aa8.49□□□□□ -1.05
COL28A1-201ENST00000399429 NSUN5P2Q63ZY6 315 aa8.49□□□□□ -1.05
COL28A1-201ENST00000399429 JMJD6Q6NYC1 403 aaPredicted RBP8.49□□□□□ -1.05
COL28A1-201ENST00000399429 MRPL10Q7Z7H8 261 aaKnown RBP8.49□□□□□ -1.05
COL28A1-201ENST00000399429 TMEM25Q86YD3 366 aa8.49□□□□□ -1.05
COL28A1-201ENST00000399429 BSCL2Q96G97 398 aaPredicted RBP8.49□□□□□ -1.05
COL28A1-201ENST00000399429 ZDHHC4Q9NPG8 344 aa8.49□□□□□ -1.05
COL28A1-201ENST00000399429 PRR13Q9NZ81 148 aa8.49□□□□□ -1.05
COL28A1-201ENST00000399429 HCSTQ9UBK5 93 aa8.49□□□□□ -1.05
COL28A1-201ENST00000399429 COL14A1Q05707 1796 aaKnown RBP8.49□□□□□ -1.05
COL28A1-201ENST00000399429 A0A0U1RQK1 487 aa8.49□□□□□ -1.05
COL28A1-201ENST00000399429 CPED1A4D0V7 1026 aa8.49□□□□□ -1.05
COL28A1-201ENST00000399429 OR2W5A6NFC9 320 aa8.49□□□□□ -1.05
COL28A1-201ENST00000399429 CBY3A6NI87 242 aa8.49□□□□□ -1.05
COL28A1-201ENST00000399429 OR52A4PA6NMU1 304 aa8.49□□□□□ -1.05
COL28A1-201ENST00000399429 SDCBPO00560 298 aaPredicted RBP8.49□□□□□ -1.05
COL28A1-201ENST00000399429 GPR37O15354 613 aa8.49□□□□□ -1.05
COL28A1-201ENST00000399429 SLC31A1O15431 190 aa8.49□□□□□ -1.05
COL28A1-201ENST00000399429 SLC31A2O15432 143 aa8.49□□□□□ -1.05
COL28A1-201ENST00000399429 SYT7O43581 403 aa8.49□□□□□ -1.05
COL28A1-201ENST00000399429 SLC16A7O60669 478 aa8.49□□□□□ -1.05
COL28A1-201ENST00000399429 CLEC3AO75596 197 aa8.49□□□□□ -1.05
COL28A1-201ENST00000399429 CTAG2O75638 210 aa8.49□□□□□ -1.05
COL28A1-201ENST00000399429 ADAP1O75689 374 aa8.49□□□□□ -1.05
COL28A1-201ENST00000399429 THBS1P07996 1170 aa8.49□□□□□ -1.05
COL28A1-201ENST00000399429 ATPAF1Q5TC12 328 aaPredicted RBP8.49□□□□□ -1.05
COL28A1-201ENST00000399429 TMEFF1Q8IYR6 380 aa8.49□□□□□ -1.05
COL28A1-201ENST00000399429 CDRT4Q8N9R6 151 aa8.49□□□□□ -1.05
COL28A1-201ENST00000399429 NECAP1Q8NC96 275 aa8.49□□□□□ -1.05
COL28A1-201ENST00000399429 SCGB1C1Q8TD33 95 aa8.49□□□□□ -1.05
COL28A1-201ENST00000399429 CMTM3Q96MX0 182 aa8.49□□□□□ -1.05
COL28A1-201ENST00000399429 NPTNQ9Y639 398 aa8.49□□□□□ -1.05
COL28A1-201ENST00000399429 A0A1W2PR48 441 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 MYADML2A6NDP7 307 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 NFKBIEO00221 500 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 SCDO00767 359 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 LILRB5O75023 590 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 ITGB2P05107 769 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 GNRHRP30968 328 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 PPA1Q15181 289 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 TMPPEQ6ZT21 453 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 ADGRE4PQ86SQ3 457 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 FIBINQ8TAL6 211 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 PACRGQ96M98 296 aaPredicted RBP8.48□□□□□ -1.05
COL28A1-201ENST00000399429 SLC5A7Q9GZV3 580 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 DUSP22Q9NRW4 184 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 TINAGQ9UJW2 476 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 SLC22A13Q9Y226 551 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 ADAMTSL1Q8N6G6 1762 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 SCN4AP35499 1836 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 ALOX12BO75342 701 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 IFNA5P01569 189 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 HEXBP07686 556 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 NDUFB7P17568 137 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 THBS2P35442 1172 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 BSGP35613 385 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 SLC26A5P58743 744 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 HERV-K104P61576 105 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 OR8G1Q15617 311 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 ZNF528Q3MIS6 628 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 CST9LP1Q5W188 147 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 LRP11Q86VZ4 500 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 DTD2Q96FN9 168 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 ATG101Q9BSB4 218 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 RAB11FIP5Q9BXF6 653 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 KLF16Q9BXK1 252 aaPredicted RBP8.48□□□□□ -1.05
COL28A1-201ENST00000399429 GPR61Q9BZJ8 451 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 METTL1Q9UBP6 276 aaKnown RBP8.48□□□□□ -1.05
COL28A1-201ENST00000399429 WNT6Q9Y6F9 365 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 CACNA1IQ9P0X4 2223 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 C9orf170A2RU37 121 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 LEFTY2O00292 366 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 CLDN4O14493 209 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 HCRTR2O43614 444 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 GLCEO94923 617 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 ZNF888P0CJ79 500 aaPredicted RBP8.48□□□□□ -1.05
COL28A1-201ENST00000399429 CX3CR1P49238 355 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 RAB28P51157 221 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 SRSF3P84103 164 aaKnown RBP8.48□□□□□ -1.05
COL28A1-201ENST00000399429 RAB32Q13637 225 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 GAMTQ14353 236 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 MFSD12Q6NUT3 480 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 NUP54Q7Z3B4 507 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 PRSS58Q8IYP2 241 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 AMER3Q8N944 861 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 OR51T1Q8NGJ9 327 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 ASB17Q8WXJ9 295 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 ZNF558Q96NG5 402 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms