RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 FOXN4Q96NZ1 517 aa18.77■□□□□ 0.6
CLN3-207ENST00000395653 SRA1Q9HD15 236 aaKnown RBP18.77■□□□□ 0.6
CLN3-207ENST00000395653 KLHL21Q9UJP4 597 aa18.77■□□□□ 0.6
CLN3-207ENST00000395653 VSTM5A8MXK1 200 aa18.76■□□□□ 0.59
CLN3-207ENST00000395653 GAAP10253 952 aa18.76■□□□□ 0.59
CLN3-207ENST00000395653 OSMP13725 252 aa18.76■□□□□ 0.59
CLN3-207ENST00000395653 APLNRP35414 380 aa18.76■□□□□ 0.59
CLN3-207ENST00000395653 GLO1Q04760 184 aa18.76■□□□□ 0.59
CLN3-207ENST00000395653 SCRN3Q0VDG4 424 aa18.76■□□□□ 0.59
CLN3-207ENST00000395653 ADIPOQQ15848 244 aa18.76■□□□□ 0.59
CLN3-207ENST00000395653 SHEQ5VZ18 495 aa18.76■□□□□ 0.59
CLN3-207ENST00000395653 FAHD1Q6P587 224 aa18.76■□□□□ 0.59
CLN3-207ENST00000395653 VHLLQ6RSH7 139 aa18.76■□□□□ 0.59
CLN3-207ENST00000395653 HIPK1Q86Z02 1210 aa18.76■□□□□ 0.59
CLN3-207ENST00000395653 C11orf40Q8WZ69 217 aa18.76■□□□□ 0.59
CLN3-207ENST00000395653 TRMT61AQ96FX7 289 aaKnown RBP18.76■□□□□ 0.59
CLN3-207ENST00000395653 CDH20Q9HBT6 801 aa18.76■□□□□ 0.59
CLN3-207ENST00000395653 MAP1AP78559 2803 aaPredicted RBP18.76■□□□□ 0.59
CLN3-207ENST00000395653 IFNGP01579 166 aa18.75■□□□□ 0.59
CLN3-207ENST00000395653 OR4A8P0C604 315 aa18.75■□□□□ 0.59
CLN3-207ENST00000395653 BMP4P12644 408 aa18.75■□□□□ 0.59
CLN3-207ENST00000395653 STOMP27105 288 aa18.75■□□□□ 0.59
CLN3-207ENST00000395653 APEX1P27695 318 aaKnown RBP18.75■□□□□ 0.59
CLN3-207ENST00000395653 THBS4P35443 961 aa18.75■□□□□ 0.59
CLN3-207ENST00000395653 GLRXP35754 106 aa18.75■□□□□ 0.59
CLN3-207ENST00000395653 SERPINF1P36955 418 aa18.75■□□□□ 0.59
CLN3-207ENST00000395653 CDKN1AP38936 164 aa18.75■□□□□ 0.59
CLN3-207ENST00000395653 AQP6Q13520 282 aa18.75■□□□□ 0.59
CLN3-207ENST00000395653 KPNB1Q14974 876 aaKnown RBP18.75■□□□□ 0.59
CLN3-207ENST00000395653 EFNB3Q15768 340 aa18.75■□□□□ 0.59
CLN3-207ENST00000395653 SWI5Q1ZZU3 235 aa18.75■□□□□ 0.59
CLN3-207ENST00000395653 SLC27A4Q6P1M0 643 aa18.75■□□□□ 0.59
CLN3-207ENST00000395653 KRTAP1-3Q8IUG1 177 aa18.75■□□□□ 0.59
CLN3-207ENST00000395653 SLC37A3Q8NCC5 494 aa18.75■□□□□ 0.59
CLN3-207ENST00000395653 AKR7LQ8NHP1 331 aa18.75■□□□□ 0.59
CLN3-207ENST00000395653 LRTOMTQ8WZ04 291 aa18.75■□□□□ 0.59
CLN3-207ENST00000395653 RAB3IPQ96QF0 476 aaPredicted RBP18.75■□□□□ 0.59
CLN3-207ENST00000395653 WNT5BQ9H1J7 359 aa18.75■□□□□ 0.59
CLN3-207ENST00000395653 FN3KQ9H479 309 aa18.75■□□□□ 0.59
CLN3-207ENST00000395653 KIF17Q9P2E2 1029 aa18.75■□□□□ 0.59
CLN3-207ENST00000395653 CELSR1Q9NYQ6 3014 aa18.75■□□□□ 0.59
CLN3-207ENST00000395653 ITPR3Q14573 2671 aa18.75■□□□□ 0.59
CLN3-207ENST00000395653 B9A039 149 aa18.74■□□□□ 0.59
CLN3-207ENST00000395653 G3V2T6 193 aa18.74■□□□□ 0.59
CLN3-207ENST00000395653 MPZL1O95297 269 aa18.74■□□□□ 0.59
CLN3-207ENST00000395653 CCL2P13500 99 aa18.74■□□□□ 0.59
CLN3-207ENST00000395653 GRK5P34947 590 aa18.74■□□□□ 0.59
CLN3-207ENST00000395653 CENPAP49450 140 aa18.74■□□□□ 0.59
CLN3-207ENST00000395653 ATP5J2P56134 94 aa18.74■□□□□ 0.59
CLN3-207ENST00000395653 RPS23P62266 143 aaKnown RBP18.74■□□□□ 0.59
CLN3-207ENST00000395653 PRSS57Q6UWY2 283 aa18.74■□□□□ 0.59
CLN3-207ENST00000395653 PAQR4Q8N4S7 273 aaPredicted RBP18.74■□□□□ 0.59
CLN3-207ENST00000395653 CYB561A3Q8NBI2 242 aa18.74■□□□□ 0.59
CLN3-207ENST00000395653 SLC26A10Q8NG04 563 aa18.74■□□□□ 0.59
CLN3-207ENST00000395653 OR2T4Q8NH00 348 aa18.74■□□□□ 0.59
CLN3-207ENST00000395653 POM121L2Q96KW2 1035 aa18.74■□□□□ 0.59
CLN3-207ENST00000395653 RBM4Q9BWF3 364 aaKnown RBP18.74■□□□□ 0.59
CLN3-207ENST00000395653 CACNG6Q9BXT2 260 aa18.74■□□□□ 0.59
CLN3-207ENST00000395653 CMC2Q9NRP2 79 aa18.74■□□□□ 0.59
CLN3-207ENST00000395653 ASH2LQ9UBL3 628 aa18.74■□□□□ 0.59
CLN3-207ENST00000395653 RIIAD1A6NNX1 92 aa18.74■□□□□ 0.59
CLN3-207ENST00000395653 COX5BP10606 129 aa18.74■□□□□ 0.59
CLN3-207ENST00000395653 ZNF3P17036 446 aa18.74■□□□□ 0.59
CLN3-207ENST00000395653 ADAM8P78325 824 aa18.74■□□□□ 0.59
CLN3-207ENST00000395653 CRMP1Q14194 572 aa18.74■□□□□ 0.59
CLN3-207ENST00000395653 MST1LQ2TV78 715 aa18.74■□□□□ 0.59
CLN3-207ENST00000395653 Q5PR19 223 aa18.74■□□□□ 0.59
CLN3-207ENST00000395653 ZNF774Q6NX45 483 aa18.74■□□□□ 0.59
CLN3-207ENST00000395653 AMIGO2Q86SJ2 522 aa18.74■□□□□ 0.59
CLN3-207ENST00000395653 ZDHHC13Q8IUH4 622 aa18.74■□□□□ 0.59
CLN3-207ENST00000395653 C10orf67Q8IYJ2 551 aa18.74■□□□□ 0.59
CLN3-207ENST00000395653 IQCF1Q8N6M8 205 aa18.74■□□□□ 0.59
CLN3-207ENST00000395653 PYDC1Q8WXC3 89 aa18.74■□□□□ 0.59
CLN3-207ENST00000395653 GABARAPL1Q9H0R8 117 aa18.74■□□□□ 0.59
CLN3-207ENST00000395653 PAPOLBQ9NRJ5 636 aaKnown RBP18.74■□□□□ 0.59
CLN3-207ENST00000395653 ARID1AO14497 2285 aa18.73■□□□□ 0.59
CLN3-207ENST00000395653 USF3Q68DE3 2245 aa18.73■□□□□ 0.59
CLN3-207ENST00000395653 H7C417 338 aa18.73■□□□□ 0.59
CLN3-207ENST00000395653 GPANK1O95872 356 aa18.73■□□□□ 0.59
CLN3-207ENST00000395653 ZNF23P17027 643 aa18.73■□□□□ 0.59
CLN3-207ENST00000395653 POU1F1P28069 291 aa18.73■□□□□ 0.59
CLN3-207ENST00000395653 PCSK6P29122 969 aa18.73■□□□□ 0.59
CLN3-207ENST00000395653 GDI2P50395 445 aaKnown RBP18.73■□□□□ 0.59
CLN3-207ENST00000395653 DAPP51397 102 aa18.73■□□□□ 0.59
CLN3-207ENST00000395653 SNRPD2P62316 118 aaKnown RBP18.73■□□□□ 0.59
CLN3-207ENST00000395653 ZFP1Q6P2D0 407 aa18.73■□□□□ 0.59
CLN3-207ENST00000395653 PARP8Q8N3A8 854 aa18.73■□□□□ 0.59
CLN3-207ENST00000395653 SVOPLQ8N434 492 aa18.73■□□□□ 0.59
CLN3-207ENST00000395653 CENPNQ96H22 339 aaPredicted RBP18.73■□□□□ 0.59
CLN3-207ENST00000395653 NMNAT2Q9BZQ4 307 aa18.73■□□□□ 0.59
CLN3-207ENST00000395653 FBXO9Q9UK97 447 aaPredicted RBP18.73■□□□□ 0.59
CLN3-207ENST00000395653 NDRG4Q9ULP0 352 aaKnown RBP18.73■□□□□ 0.59
CLN3-207ENST00000395653 POLR1DQ9Y2S0 133 aa18.73■□□□□ 0.59
CLN3-207ENST00000395653 CMAHPQ9Y471 501 aa18.73■□□□□ 0.59
CLN3-207ENST00000395653 PMF1-BGLAPU3KQ54 211 aa18.73■□□□□ 0.59
CLN3-207ENST00000395653 LOC100509620A0A075B734 347 aa18.72■□□□□ 0.59
CLN3-207ENST00000395653 SGCEO43556 437 aa18.72■□□□□ 0.59
CLN3-207ENST00000395653 GPRIN2O60269 458 aa18.72■□□□□ 0.59
CLN3-207ENST00000395653 TFP02787 698 aa18.72■□□□□ 0.59
CLN3-207ENST00000395653 SLC25A1P53007 311 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms