RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 ZNF587BE7ETH6 402 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 PLA2G10O15496 165 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 ZNF354AO60765 605 aaPredicted RBP9.26□□□□□ -0.93
COL6A3-205ENST00000392004 CD14P08571 375 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 CCL2P13500 99 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 ARSBP15848 533 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 IL11P20809 199 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 TALDO1P37837 337 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 TAGLNQ01995 201 aaKnown RBP9.26□□□□□ -0.93
COL6A3-205ENST00000392004 ZNF91Q05481 1191 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 TSPAN31Q12999 210 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 CDONQ4KMG0 1287 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 SPATA46Q5T0L3 261 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 ACSM5Q6NUN0 579 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 MRPL14Q6P1L8 145 aaKnown RBP9.26□□□□□ -0.93
COL6A3-205ENST00000392004 KCTD18Q6PI47 426 aaPredicted RBP9.26□□□□□ -0.93
COL6A3-205ENST00000392004 LRRN1Q6UXK5 716 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 ACBD7Q8N6N7 88 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 NANOGP1Q8N7R0 232 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 UXS1Q8NBZ7 420 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 VRK1Q99986 396 aaPredicted RBP9.26□□□□□ -0.93
COL6A3-205ENST00000392004 BCL2L10Q9HD36 194 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 ASF1BQ9NVP2 202 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 GTF3C1Q12789 2109 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 TRBV2A0A0J9YWF9 115 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 PRAMEF27A3QJZ7 478 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 LEUTXA8MZ59 168 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 SHOXO15266 292 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 KHDRBS3O75525 346 aaKnown RBP9.26□□□□□ -0.93
COL6A3-205ENST00000392004 HIST1H1CP16403 213 aaKnown RBP9.26□□□□□ -0.93
COL6A3-205ENST00000392004 S1PR1P21453 382 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 COX10Q12887 443 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 MRPL49Q13405 166 aaKnown RBP9.26□□□□□ -0.93
COL6A3-205ENST00000392004 ZSWIM7Q19AV6 140 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 OR2G6Q5TZ20 316 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 JMJD6Q6NYC1 403 aaPredicted RBP9.26□□□□□ -0.93
COL6A3-205ENST00000392004 ANKRD16Q6P6B7 361 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 HDDC2Q7Z4H3 204 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 GLCCI1Q86VQ1 547 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 MIXL1Q9H2W2 232 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 TINAGQ9UJW2 476 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 LAMA1P25391 3075 aa9.25□□□□□ -0.93
COL6A3-205ENST00000392004 ZNF593O00488 134 aaPredicted RBP9.25□□□□□ -0.93
COL6A3-205ENST00000392004 GPR171O14626 319 aa9.25□□□□□ -0.93
COL6A3-205ENST00000392004 EIF1BO60739 113 aaKnown RBP9.25□□□□□ -0.93
COL6A3-205ENST00000392004 TACSTD2P09758 323 aa9.25□□□□□ -0.93
COL6A3-205ENST00000392004 APLNRP35414 380 aa9.25□□□□□ -0.93
COL6A3-205ENST00000392004 LIMK1P53667 647 aa9.25□□□□□ -0.93
COL6A3-205ENST00000392004 SNRPGP62308 76 aaKnown RBP9.25□□□□□ -0.93
COL6A3-205ENST00000392004 FOXK2Q01167 660 aa9.25□□□□□ -0.93
COL6A3-205ENST00000392004 CLN3Q13286 438 aa9.25□□□□□ -0.93
COL6A3-205ENST00000392004 SLC22A25Q6T423 547 aa9.25□□□□□ -0.93
COL6A3-205ENST00000392004 OR5AS1Q8N127 324 aa9.25□□□□□ -0.93
COL6A3-205ENST00000392004 NR4A3Q92570 626 aa9.25□□□□□ -0.93
COL6A3-205ENST00000392004 CNN2Q99439 309 aaKnown RBP9.25□□□□□ -0.93
COL6A3-205ENST00000392004 NAV2Q8IVL1 2488 aa9.25□□□□□ -0.93
COL6A3-205ENST00000392004 COL4A4P53420 1690 aaPredicted RBP9.25□□□□□ -0.93
COL6A3-205ENST00000392004 CD8B2A6NJW9 211 aa9.25□□□□□ -0.93
COL6A3-205ENST00000392004 ABHD16AO95870 558 aa9.25□□□□□ -0.93
COL6A3-205ENST00000392004 CD8BP10966 210 aa9.25□□□□□ -0.93
COL6A3-205ENST00000392004 FABP6P51161 128 aa9.25□□□□□ -0.93
COL6A3-205ENST00000392004 CEACAM16Q2WEN9 425 aa9.25□□□□□ -0.93
COL6A3-205ENST00000392004 MRGPRX4Q96LA9 322 aa9.25□□□□□ -0.93
COL6A3-205ENST00000392004 DYNLRB1Q9NP97 96 aa9.25□□□□□ -0.93
COL6A3-205ENST00000392004 CHST11Q9NPF2 352 aa9.25□□□□□ -0.93
COL6A3-205ENST00000392004 EIF3KQ9UBQ5 218 aaKnown RBP9.25□□□□□ -0.93
COL6A3-205ENST00000392004 SLC23A1Q9UHI7 598 aa9.25□□□□□ -0.93
COL6A3-205ENST00000392004 FZR1Q9UM11 496 aa9.25□□□□□ -0.93
COL6A3-205ENST00000392004 PROCRQ9UNN8 238 aa9.25□□□□□ -0.93
COL6A3-205ENST00000392004 TSPAN4O14817 238 aa9.25□□□□□ -0.93
COL6A3-205ENST00000392004 SLC22A5O76082 557 aa9.25□□□□□ -0.93
COL6A3-205ENST00000392004 PXDC1Q5TGL8 231 aa9.25□□□□□ -0.93
COL6A3-205ENST00000392004 FAM205BPQ63HN1 556 aa9.25□□□□□ -0.93
COL6A3-205ENST00000392004 LYPD4Q6UWN0 246 aa9.25□□□□□ -0.93
COL6A3-205ENST00000392004 ABHD12BQ7Z5M8 362 aaPredicted RBP9.25□□□□□ -0.93
COL6A3-205ENST00000392004 SLC51BQ86UW2 128 aa9.25□□□□□ -0.93
COL6A3-205ENST00000392004 BMPERQ8N8U9 685 aa9.25□□□□□ -0.93
COL6A3-205ENST00000392004 ALG12Q9BV10 488 aa9.25□□□□□ -0.93
COL6A3-205ENST00000392004 RANBP3Q9H6Z4 567 aaPredicted RBP9.25□□□□□ -0.93
COL6A3-205ENST00000392004 MRPL39Q9NYK5 338 aaKnown RBP9.25□□□□□ -0.93
COL6A3-205ENST00000392004 MGAT4AQ9UM21 535 aa9.25□□□□□ -0.93
COL6A3-205ENST00000392004 FRYLO94915 3013 aa9.25□□□□□ -0.93
COL6A3-205ENST00000392004 SPEGQ15772 3267 aa9.24□□□□□ -0.93
COL6A3-205ENST00000392004 IRGMA1A4Y4 181 aa9.24□□□□□ -0.93
COL6A3-205ENST00000392004 E9PQ18 207 aa9.24□□□□□ -0.93
COL6A3-205ENST00000392004 DVL2O14641 736 aa9.24□□□□□ -0.93
COL6A3-205ENST00000392004 IFNA7P01567 189 aa9.24□□□□□ -0.93
COL6A3-205ENST00000392004 HTR2AP28223 471 aa9.24□□□□□ -0.93
COL6A3-205ENST00000392004 MFAP5Q13361 173 aa9.24□□□□□ -0.93
COL6A3-205ENST00000392004 KIF18BQ86Y91 864 aa9.24□□□□□ -0.93
COL6A3-205ENST00000392004 TUSC5Q8IXB3 177 aa9.24□□□□□ -0.93
COL6A3-205ENST00000392004 ST8SIA1Q92185 356 aa9.24□□□□□ -0.93
COL6A3-205ENST00000392004 DCLRE1CQ96SD1 692 aaKnown RBP9.24□□□□□ -0.93
COL6A3-205ENST00000392004 INTS14Q96SY0 518 aa9.24□□□□□ -0.93
COL6A3-205ENST00000392004 POLE3Q9NRF9 147 aa9.24□□□□□ -0.93
COL6A3-205ENST00000392004 A0A0B4J293 547 aa9.24□□□□□ -0.93
COL6A3-205ENST00000392004 ANKRD61A6NGH8 418 aa9.24□□□□□ -0.93
COL6A3-205ENST00000392004 SLC22A31A6NKX4 558 aa9.24□□□□□ -0.93
COL6A3-205ENST00000392004 M0R1B8 84 aa9.24□□□□□ -0.93
COL6A3-205ENST00000392004 HPGDSO60760 199 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms