RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 FAM25AB3EWG3 89 aa16.2■□□□□ 0.18
CCDC88C-203ENST00000389856 FAM25CB3EWG5 89 aa16.2■□□□□ 0.18
CCDC88C-203ENST00000389856 FAM25GB3EWG6 89 aa16.2■□□□□ 0.18
CCDC88C-203ENST00000389856 DCTN6O00399 190 aa16.2■□□□□ 0.18
CCDC88C-203ENST00000389856 HRGP04196 525 aa16.2■□□□□ 0.18
CCDC88C-203ENST00000389856 NPR2P20594 1047 aa16.2■□□□□ 0.18
CCDC88C-203ENST00000389856 APEX1P27695 318 aaKnown RBP16.2■□□□□ 0.18
CCDC88C-203ENST00000389856 MAGEA5P43359 124 aa16.2■□□□□ 0.18
CCDC88C-203ENST00000389856 EIF1AXP47813 144 aaKnown RBP16.2■□□□□ 0.18
CCDC88C-203ENST00000389856 CLDN20P56880 219 aa16.2■□□□□ 0.18
CCDC88C-203ENST00000389856 TAB1Q15750 504 aa16.2■□□□□ 0.18
CCDC88C-203ENST00000389856 SLC18B1Q6NT16 456 aa16.2■□□□□ 0.18
CCDC88C-203ENST00000389856 NHLRC1Q6VVB1 395 aa16.2■□□□□ 0.18
CCDC88C-203ENST00000389856 PNPLA5Q7Z6Z6 429 aaPredicted RBP16.2■□□□□ 0.18
CCDC88C-203ENST00000389856 GLB1L2Q8IW92 636 aa16.2■□□□□ 0.18
CCDC88C-203ENST00000389856 ZADH2Q8N4Q0 377 aa16.2■□□□□ 0.18
CCDC88C-203ENST00000389856 OR10H5Q8NGA6 315 aa16.2■□□□□ 0.18
CCDC88C-203ENST00000389856 OR10D3Q8NH80 312 aa16.2■□□□□ 0.18
CCDC88C-203ENST00000389856 RPS4Y2Q8TD47 263 aa16.2■□□□□ 0.18
CCDC88C-203ENST00000389856 KCNJ15Q99712 375 aa16.2■□□□□ 0.18
CCDC88C-203ENST00000389856 MRPL13Q9BYD1 178 aaKnown RBP16.2■□□□□ 0.18
CCDC88C-203ENST00000389856 GNG8Q9UK08 70 aa16.2■□□□□ 0.18
CCDC88C-203ENST00000389856 ZNF221Q9UK13 617 aa16.2■□□□□ 0.18
CCDC88C-203ENST00000389856 MSRB2Q9Y3D2 182 aa16.2■□□□□ 0.18
CCDC88C-203ENST00000389856 KIAA1549Q9HCM3 1950 aa16.2■□□□□ 0.18
CCDC88C-203ENST00000389856 MEIOCA2RUB1 952 aa16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 TVP23AA6NH52 213 aa16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 PLA2G10O15496 165 aa16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 SSX4O60224 188 aa16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 NCR1O76036 304 aa16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 PGA4P0DJD7 388 aa16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 PGA3P0DJD8 388 aa16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 RAB3BP20337 219 aa16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 DDOSTP39656 456 aa16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 INPP1P49441 399 aa16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 GDI2P50395 445 aaKnown RBP16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 CLDN17P56750 224 aa16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 ADAM8P78325 824 aa16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 KCTD18Q6PI47 426 aaPredicted RBP16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 CREB3L2Q70SY1 520 aa16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 SPATC1Q76KD6 591 aa16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 PELI1Q96FA3 418 aa16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 ADGRG7Q96K78 797 aa16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 NEDD4LQ96PU5 975 aa16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 SMAD5Q99717 465 aaKnown RBP16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 RNF121Q9H920 327 aa16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 KCNG2Q9UJ96 466 aa16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 RCE1Q9Y256 329 aa16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 NCKAP5O14513 1909 aa16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 SMIM30A4D0T7 59 aa16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 NOTOA8MTQ0 251 aa16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 ZNF879B4DU55 563 aa16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 CXCL13O43927 109 aa16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 SYNGR4O95473 234 aa16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 UCHL1P09936 223 aa16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 ELK1P19419 428 aa16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 HLA-DMAP28067 261 aa16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 THBS2P35442 1172 aa16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 RFC3P40938 356 aa16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 GUCA1AP43080 201 aaPredicted RBP16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 NR4A2P43354 598 aa16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 INSL4Q14641 139 aa16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 SLC17A1Q14916 467 aa16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 RSBN1Q5VWQ0 802 aaPredicted RBP16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 PLET1Q6UQ28 207 aa16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 UNQ9370/PRO34162Q6UXP9 181 aa16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 CHMP1BQ7LBR1 199 aa16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 OTOSQ8NHW6 89 aa16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 EMC6Q9BV81 110 aa16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 LDAHQ9H6V9 325 aa16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 EXO5Q9H790 373 aa16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 EXTL2Q9UBQ6 330 aa16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 MCTS1Q9ULC4 181 aaKnown RBP16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 COA3Q9Y2R0 106 aaPredicted RBP16.19■□□□□ 0.18
CCDC88C-203ENST00000389856 WDFY3Q8IZQ1 3526 aa16.18■□□□□ 0.18
CCDC88C-203ENST00000389856 A0A0G2JK05 382 aa16.18■□□□□ 0.18
CCDC88C-203ENST00000389856 ZNF814B7Z6K7 855 aa16.18■□□□□ 0.18
CCDC88C-203ENST00000389856 ZNF593O00488 134 aaPredicted RBP16.18■□□□□ 0.18
CCDC88C-203ENST00000389856 PDCD5O14737 125 aa16.18■□□□□ 0.18
CCDC88C-203ENST00000389856 SMAD9O15198 467 aaKnown RBP16.18■□□□□ 0.18
CCDC88C-203ENST00000389856 CSNK1A1P48729 337 aa16.18■□□□□ 0.18
CCDC88C-203ENST00000389856 STARP49675 285 aa16.18■□□□□ 0.18
CCDC88C-203ENST00000389856 CAMK2DQ13557 499 aa16.18■□□□□ 0.18
CCDC88C-203ENST00000389856 TP53I3Q53FA7 332 aa16.18■□□□□ 0.18
CCDC88C-203ENST00000389856 TEX30Q5JUR7 227 aa16.18■□□□□ 0.18
CCDC88C-203ENST00000389856 PYHIN1Q6K0P9 492 aa16.18■□□□□ 0.18
CCDC88C-203ENST00000389856 SSX6Q7RTT6 188 aa16.18■□□□□ 0.18
CCDC88C-203ENST00000389856 OR6N1Q8NGY5 312 aa16.18■□□□□ 0.18
CCDC88C-203ENST00000389856 OR6F1Q8NGZ6 308 aa16.18■□□□□ 0.18
CCDC88C-203ENST00000389856 MRI1Q9BV20 369 aa16.18■□□□□ 0.18
CCDC88C-203ENST00000389856 SRXN1Q9BYN0 137 aa16.18■□□□□ 0.18
CCDC88C-203ENST00000389856 PCDHGA9Q9Y5G4 932 aaKnown RBP16.18■□□□□ 0.18
CCDC88C-203ENST00000389856 CNTRLQ7Z7A1 2325 aa16.18■□□□□ 0.18
CCDC88C-203ENST00000389856 FREM3P0C091 2139 aa16.18■□□□□ 0.18
CCDC88C-203ENST00000389856 GPR171O14626 319 aa16.17■□□□□ 0.18
CCDC88C-203ENST00000389856 LYRM1O43325 122 aa16.17■□□□□ 0.18
CCDC88C-203ENST00000389856 AQP8O94778 261 aa16.17■□□□□ 0.18
CCDC88C-203ENST00000389856 SPARCP09486 303 aa16.17■□□□□ 0.18
CCDC88C-203ENST00000389856 ZNF708P17019 499 aa16.17■□□□□ 0.18
CCDC88C-203ENST00000389856 ALOX5APP20292 161 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms