RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 ARHGAP11AQ6P4F7 1023 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 ARL9Q6T311 187 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 LANCL3Q6ZV70 420 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 ZNF321PQ8N8H1 164 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 KDF1Q8NAX2 398 aaPredicted RBP9.12□□□□□ -0.95
SYNE1-203ENST00000354674 NFAM1Q8NET5 270 aaPredicted RBP9.12□□□□□ -0.95
SYNE1-203ENST00000354674 OR1N1Q8NGS0 311 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 OR56B4Q8NH76 319 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 DAZLQ92904 295 aaKnown RBP9.12□□□□□ -0.95
SYNE1-203ENST00000354674 POLR2J3Q9H1A7 115 aaKnown RBP9.12□□□□□ -0.95
SYNE1-203ENST00000354674 MTHFD2LQ9H903 347 aaPredicted RBP9.12□□□□□ -0.95
SYNE1-203ENST00000354674 ISG20L2Q9H9L3 353 aaKnown RBP9.12□□□□□ -0.95
SYNE1-203ENST00000354674 ACER3Q9NUN7 267 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 PLEKHA6Q9Y2H5 1048 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 GPR55Q9Y2T6 319 aaPredicted RBP9.12□□□□□ -0.95
SYNE1-203ENST00000354674 CBY1Q9Y3M2 126 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 ZAR1LA6NP61 321 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 PRSS47A8MTI9 375 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 FCMRO60667 390 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 KLF7O75840 302 aaPredicted RBP9.12□□□□□ -0.95
SYNE1-203ENST00000354674 RAB36O95755 333 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 EPPINO95925 133 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 SNRNP70P08621 437 aaKnown RBP9.12□□□□□ -0.95
SYNE1-203ENST00000354674 H2AFB1P0C5Y9 115 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 FTH1P19P0C7X4 201 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 GABRA3P34903 492 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 TRHRP34981 398 aaPredicted RBP9.12□□□□□ -0.95
SYNE1-203ENST00000354674 ACVR1BP36896 505 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 F2RL1P55085 397 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 CLDN12P56749 244 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 FOXL2P58012 376 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 AP3S2P59780 193 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 ASCL5Q7RTU5 278 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 FAM122BQ7Z309 247 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 OR2W3Q7Z3T1 314 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 GNPDA2Q8TDQ7 276 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 TNFAIP8L1Q8WVP5 186 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 GEMIN6Q8WXD5 167 aaKnown RBP9.12□□□□□ -0.95
SYNE1-203ENST00000354674 ADIPOR1Q96A54 375 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 ZNF354BQ96LW1 612 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 TOLLIPQ9H0E2 274 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 HRH4Q9H3N8 390 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 DMRT1Q9Y5R6 373 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 LOC102723996A0A087X1L8 192 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 STK17BO94768 372 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 HCKP08631 526 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 TBXA2RP21731 343 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 EMP2P54851 167 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 ZNHIT3Q15649 155 aaPredicted RBP9.12□□□□□ -0.95
SYNE1-203ENST00000354674 SHISA6Q6ZSJ9 500 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 COX18Q8N8Q8 333 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 OR10D4PQ8NGN7 298 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 OR5M3Q8NGP4 307 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 ZG16BQ96DA0 208 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 NUDT9Q9BW91 350 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 SLC25A19Q9HC21 320 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 TREM2Q9NZC2 230 aa9.12□□□□□ -0.95
SYNE1-203ENST00000354674 SF3B6Q9Y3B4 125 aaKnown RBP9.12□□□□□ -0.95
SYNE1-203ENST00000354674 A0A1W2PPH5 198 aa9.11□□□□□ -0.95
SYNE1-203ENST00000354674 TMEM82A0PJX8 343 aa9.11□□□□□ -0.95
SYNE1-203ENST00000354674 FAM183AA6NL82 134 aa9.11□□□□□ -0.95
SYNE1-203ENST00000354674 SYT5O00445 386 aa9.11□□□□□ -0.95
SYNE1-203ENST00000354674 STX11O75558 287 aa9.11□□□□□ -0.95
SYNE1-203ENST00000354674 UMODP07911 640 aa9.11□□□□□ -0.95
SYNE1-203ENST00000354674 JMJD7P0C870 316 aa9.11□□□□□ -0.95
SYNE1-203ENST00000354674 PPICP45877 212 aa9.11□□□□□ -0.95
SYNE1-203ENST00000354674 SLC16A1P53985 500 aa9.11□□□□□ -0.95
SYNE1-203ENST00000354674 NDUFA6P56556 154 aa9.11□□□□□ -0.95
SYNE1-203ENST00000354674 FAM199XQ6PEV8 388 aaPredicted RBP9.11□□□□□ -0.95
SYNE1-203ENST00000354674 PAPD4Q6PIY7 484 aaKnown RBP9.11□□□□□ -0.95
SYNE1-203ENST00000354674 RPTNQ6XPR3 784 aa9.11□□□□□ -0.95
SYNE1-203ENST00000354674 COMTD1Q86VU5 262 aa9.11□□□□□ -0.95
SYNE1-203ENST00000354674 FAM24BQ8N5W8 94 aa9.11□□□□□ -0.95
SYNE1-203ENST00000354674 ZNF441Q8N8Z8 693 aa9.11□□□□□ -0.95
SYNE1-203ENST00000354674 ZNF511Q8NB15 262 aa9.11□□□□□ -0.95
SYNE1-203ENST00000354674 NAXEQ8NCW5 288 aa9.11□□□□□ -0.95
SYNE1-203ENST00000354674 C17orf47Q8NEP4 570 aa9.11□□□□□ -0.95
SYNE1-203ENST00000354674 OR51S1Q8NGJ8 323 aa9.11□□□□□ -0.95
SYNE1-203ENST00000354674 SPRYD4Q8WW59 207 aaPredicted RBP9.11□□□□□ -0.95
SYNE1-203ENST00000354674 KIF26BQ2KJY2 2108 aa9.11□□□□□ -0.95
SYNE1-203ENST00000354674 COLCA2A8K830 154 aa9.11□□□□□ -0.95
SYNE1-203ENST00000354674 PSMD9O00233 223 aa9.11□□□□□ -0.95
SYNE1-203ENST00000354674 MAGEB4O15481 346 aaPredicted RBP9.11□□□□□ -0.95
SYNE1-203ENST00000354674 IGKV1D-16P01601 117 aa9.11□□□□□ -0.95
SYNE1-203ENST00000354674 THBS1P07996 1170 aa9.11□□□□□ -0.95
SYNE1-203ENST00000354674 RAB40ALP0C0E4 278 aa9.11□□□□□ -0.95
SYNE1-203ENST00000354674 ZNF25P17030 456 aaPredicted RBP9.11□□□□□ -0.95
SYNE1-203ENST00000354674 ITGA3P26006 1051 aa9.11□□□□□ -0.95
SYNE1-203ENST00000354674 STAT5AP42229 794 aa9.11□□□□□ -0.95
SYNE1-203ENST00000354674 DYRK1AQ13627 763 aa9.11□□□□□ -0.95
SYNE1-203ENST00000354674 MICBQ29980 383 aa9.11□□□□□ -0.95
SYNE1-203ENST00000354674 SYT14P1Q58G82 188 aa9.11□□□□□ -0.95
SYNE1-203ENST00000354674 C6orf15Q6UXA7 325 aaPredicted RBP9.11□□□□□ -0.95
SYNE1-203ENST00000354674 ZNF546Q86UE3 836 aa9.11□□□□□ -0.95
SYNE1-203ENST00000354674 C9orf40Q8IXQ3 194 aa9.11□□□□□ -0.95
SYNE1-203ENST00000354674 ZNF619Q8N2I2 560 aa9.11□□□□□ -0.95
SYNE1-203ENST00000354674 ST7LQ8TDW4 575 aa9.11□□□□□ -0.95
SYNE1-203ENST00000354674 MR1Q95460 341 aa9.11□□□□□ -0.95
SYNE1-203ENST00000354674 TMEM41AQ96HV5 264 aa9.11□□□□□ -0.95
SYNE1-203ENST00000354674 WFDC6Q9BQY6 131 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms