RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 ELOA3DA6NLF2 546 aaPredicted RBP6.12□□□□□ -1.43
VPS39-202ENST00000348544 TMEM212A6NML5 194 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 OR52A4PA6NMU1 304 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 WRBO00258 174 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 P2RX6O15547 441 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 MT-ND4LP03901 98 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 ZNF14P17017 642 aaPredicted RBP6.12□□□□□ -1.43
VPS39-202ENST00000348544 VAMP1P23763 118 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 CCKBRP32239 447 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 CD80P33681 288 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 SERPINF1P36955 418 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 EIF2S3P41091 472 aaKnown RBP6.12□□□□□ -1.43
VPS39-202ENST00000348544 HTRA3P83110 453 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 CDK3Q00526 305 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 ELOA3BQ3SY89 546 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 PAPD4Q6PIY7 484 aaKnown RBP6.12□□□□□ -1.43
VPS39-202ENST00000348544 ADAMTSL4Q6UY14 1074 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 LIN28BQ6ZN17 250 aaKnown RBP eCLIP6.12□□□□□ -1.43
VPS39-202ENST00000348544 TMEFF1Q8IYR6 380 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 TMEM52Q8NDY8 209 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 ELOA3Q8NG57 546 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 OR52E1Q8NGJ3 308 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 TSEN15Q8WW01 171 aaKnown RBP6.12□□□□□ -1.43
VPS39-202ENST00000348544 SMARCD2Q92925 531 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 PHB2Q99623 299 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 TEX101Q9BY14 249 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 COMMD4Q9H0A8 199 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 WDR76Q9H967 626 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 ASH2LQ9UBL3 628 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 TIMM10BQ9Y5J6 103 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 MRPS18BQ9Y676 258 aaKnown RBP6.12□□□□□ -1.43
VPS39-202ENST00000348544 USP34Q70CQ2 3546 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 CACNA1CQ13936 2221 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 C5orf51A6NDU8 294 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 EFSO43281 561 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 MBTPS2O43462 519 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 IGKV1D-16P01601 117 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 ERCC1P07992 297 aaPredicted RBP6.12□□□□□ -1.43
VPS39-202ENST00000348544 RNF224P0DH78 156 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 DAOP14920 347 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 NME2P22392 152 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 SLC6A9P48067 706 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 CSNK1EP49674 416 aaKnown RBP6.12□□□□□ -1.43
VPS39-202ENST00000348544 MGAT2Q10469 447 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 PMPCAQ10713 525 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 TOMM20Q15388 145 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 DEFB134Q4QY38 66 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 ZNF585AQ6P3V2 769 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 BTNL8Q6UX41 500 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 DPY19L4Q7Z388 723 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 GVQW1Q8N7I0 195 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 CDRT4Q8N9R6 151 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 ZCCHC10Q8TBK6 192 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 GAL3ST3Q96A11 431 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 AKR1E2Q96JD6 320 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 IP6K3Q96PC2 410 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 STACQ99469 402 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 MAP3K3Q99759 626 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 GGACTQ9BVM4 153 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 SLC17A9Q9BYT1 436 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 TRIM2Q9C040 744 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 CAPN10Q9HC96 672 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 SRA1Q9HD15 236 aaKnown RBP6.12□□□□□ -1.43
VPS39-202ENST00000348544 RPS10P5Q9NQ39 176 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 SLC2A8Q9NY64 477 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 OR5AC2Q9NZP5 309 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 CGGBP1Q9UFW8 167 aaPredicted RBP6.12□□□□□ -1.43
VPS39-202ENST00000348544 FBXL21Q9UKT6 434 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 SLC22A13Q9Y226 551 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 KCNK6Q9Y257 313 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 DMRT1Q9Y5R6 373 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 A0A1W2PQ45 241 aaPredicted RBP6.12□□□□□ -1.43
VPS39-202ENST00000348544 A0A1W2PQY0 241 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 ZNF860A6NHJ4 632 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 IFITM10A6NMD0 228 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 NPIPB9F8W1W9 429 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 MFNGO00587 321 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 FGF17O60258 216 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 LRP3O75074 770 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 FBXO24O75426 580 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 ZNF432O94892 652 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 LY86O95711 162 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 PRNPP04156 253 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 AKR1C4P17516 323 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 ALOX5APP20292 161 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 TACR3P29371 465 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 HTR5AP47898 357 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 SLC25A1P53007 311 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 EIF2B1Q14232 305 aaKnown RBP6.12□□□□□ -1.43
VPS39-202ENST00000348544 ISXQ2M1V0 245 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 AWAT1Q58HT5 328 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 GLYATL3Q5SZD4 288 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 NCMAPQ5T1S8 102 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 ULK3Q6PHR2 472 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 PPP1R3BQ86XI6 285 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 ZNF761Q86XN6 746 aaPredicted RBP6.12□□□□□ -1.43
VPS39-202ENST00000348544 SLC39A11Q8N1S5 342 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 RAB42Q8N4Z0 105 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 WDSUB1Q8N9V3 476 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 OR4N2Q8NGD1 307 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms