RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 HMGN1P05114 100 aa13.77□□□□□ -0.21
CCDC28A-201ENST00000332797 CCL2P13500 99 aa13.77□□□□□ -0.21
CCDC28A-201ENST00000332797 CD53P19397 219 aa13.77□□□□□ -0.21
CCDC28A-201ENST00000332797 ESRRGP62508 458 aa13.77□□□□□ -0.21
CCDC28A-201ENST00000332797 PPP2R2BQ00005 443 aa13.77□□□□□ -0.21
CCDC28A-201ENST00000332797 PSG4Q00888 419 aa13.77□□□□□ -0.21
CCDC28A-201ENST00000332797 PQLC1Q8N2U9 271 aa13.77□□□□□ -0.21
CCDC28A-201ENST00000332797 SLC26A10Q8NG04 563 aa13.77□□□□□ -0.21
CCDC28A-201ENST00000332797 OR10H5Q8NGA6 315 aa13.77□□□□□ -0.21
CCDC28A-201ENST00000332797 OR4F15Q8NGB8 312 aa13.77□□□□□ -0.21
CCDC28A-201ENST00000332797 OR51L1Q8NGJ5 315 aa13.77□□□□□ -0.21
CCDC28A-201ENST00000332797 SMAP2Q8WU79 429 aaPredicted RBP13.77□□□□□ -0.21
CCDC28A-201ENST00000332797 NINJ1Q92982 152 aa13.77□□□□□ -0.21
CCDC28A-201ENST00000332797 PLEKHA8Q96JA3 519 aa13.77□□□□□ -0.21
CCDC28A-201ENST00000332797 DHRS9Q9BPW9 319 aa13.77□□□□□ -0.21
CCDC28A-201ENST00000332797 RBM4BQ9BQ04 359 aaKnown RBP13.77□□□□□ -0.21
CCDC28A-201ENST00000332797 TEX12Q9BXU0 123 aa13.77□□□□□ -0.21
CCDC28A-201ENST00000332797 OR2H1Q9GZK4 316 aa13.77□□□□□ -0.21
CCDC28A-201ENST00000332797 C1orf198Q9H425 327 aa13.77□□□□□ -0.21
CCDC28A-201ENST00000332797 MED20Q9H944 212 aa13.77□□□□□ -0.21
CCDC28A-201ENST00000332797 MAST4O15021 2626 aa13.76□□□□□ -0.21
CCDC28A-201ENST00000332797 SPG11Q96JI7 2443 aa13.76□□□□□ -0.21
CCDC28A-201ENST00000332797 FAM183AA6NL82 134 aa13.76□□□□□ -0.21
CCDC28A-201ENST00000332797 SURF4O15260 269 aa13.76□□□□□ -0.21
CCDC28A-201ENST00000332797 GYPBP06028 91 aa13.76□□□□□ -0.21
CCDC28A-201ENST00000332797 SPI1P17947 270 aa13.76□□□□□ -0.21
CCDC28A-201ENST00000332797 PAICSP22234 425 aaKnown RBP13.76□□□□□ -0.21
CCDC28A-201ENST00000332797 APEX1P27695 318 aaKnown RBP13.76□□□□□ -0.21
CCDC28A-201ENST00000332797 APLNRP35414 380 aa13.76□□□□□ -0.21
CCDC28A-201ENST00000332797 FABP6P51161 128 aa13.76□□□□□ -0.21
CCDC28A-201ENST00000332797 SLC25A1P53007 311 aa13.76□□□□□ -0.21
CCDC28A-201ENST00000332797 LSM6P62312 80 aaKnown RBP13.76□□□□□ -0.21
CCDC28A-201ENST00000332797 TEKQ02763 1124 aa13.76□□□□□ -0.21
CCDC28A-201ENST00000332797 HGFACQ04756 655 aa13.76□□□□□ -0.21
CCDC28A-201ENST00000332797 AQP6Q13520 282 aa13.76□□□□□ -0.21
CCDC28A-201ENST00000332797 PTGES3Q15185 160 aaKnown RBP13.76□□□□□ -0.21
CCDC28A-201ENST00000332797 KCNMB1Q16558 191 aa13.76□□□□□ -0.21
CCDC28A-201ENST00000332797 TBC1D28Q2M2D7 210 aa13.76□□□□□ -0.21
CCDC28A-201ENST00000332797 KRT80Q6KB66 452 aa13.76□□□□□ -0.21
CCDC28A-201ENST00000332797 ZNF774Q6NX45 483 aa13.76□□□□□ -0.21
CCDC28A-201ENST00000332797 VHLLQ6RSH7 139 aa13.76□□□□□ -0.21
CCDC28A-201ENST00000332797 SYT9Q86SS6 491 aa13.76□□□□□ -0.21
CCDC28A-201ENST00000332797 CPEB3Q8NE35 698 aaKnown RBP13.76□□□□□ -0.21
CCDC28A-201ENST00000332797 ZNRF4Q8WWF5 429 aa13.76□□□□□ -0.21
CCDC28A-201ENST00000332797 OSBPL10Q9BXB5 764 aa13.76□□□□□ -0.21
CCDC28A-201ENST00000332797 NMNAT2Q9BZQ4 307 aa13.76□□□□□ -0.21
CCDC28A-201ENST00000332797 WNT5BQ9H1J7 359 aa13.76□□□□□ -0.21
CCDC28A-201ENST00000332797 CDH20Q9HBT6 801 aa13.76□□□□□ -0.21
CCDC28A-201ENST00000332797 FAIMQ9NVQ4 179 aa13.76□□□□□ -0.21
CCDC28A-201ENST00000332797 ASH2LQ9UBL3 628 aa13.76□□□□□ -0.21
CCDC28A-201ENST00000332797 ENOPH1Q9UHY7 261 aa13.76□□□□□ -0.21
CCDC28A-201ENST00000332797 LAMP3Q9UQV4 416 aa13.76□□□□□ -0.21
CCDC28A-201ENST00000332797 AKAP6Q13023 2319 aa13.76□□□□□ -0.21
CCDC28A-201ENST00000332797 NAV2Q8IVL1 2488 aa13.76□□□□□ -0.21
CCDC28A-201ENST00000332797 EI24O14681 340 aa13.75□□□□□ -0.21
CCDC28A-201ENST00000332797 TFP02787 698 aa13.75□□□□□ -0.21
CCDC28A-201ENST00000332797 SOD3P08294 240 aa13.75□□□□□ -0.21
CCDC28A-201ENST00000332797 CLUP10909 449 aa13.75□□□□□ -0.21
CCDC28A-201ENST00000332797 ZNF35P13682 527 aa13.75□□□□□ -0.21
CCDC28A-201ENST00000332797 STOMP27105 288 aa13.75□□□□□ -0.21
CCDC28A-201ENST00000332797 GALK2Q01415 458 aa13.75□□□□□ -0.21
CCDC28A-201ENST00000332797 SCRN3Q0VDG4 424 aa13.75□□□□□ -0.21
CCDC28A-201ENST00000332797 SNTB2Q13425 540 aaKnown RBP13.75□□□□□ -0.21
CCDC28A-201ENST00000332797 DAG1Q14118 895 aa13.75□□□□□ -0.21
CCDC28A-201ENST00000332797 ALDH16A1Q8IZ83 802 aa13.75□□□□□ -0.21
CCDC28A-201ENST00000332797 PAQR4Q8N4S7 273 aaPredicted RBP13.75□□□□□ -0.21
CCDC28A-201ENST00000332797 OR1J2Q8NGS2 313 aa13.75□□□□□ -0.21
CCDC28A-201ENST00000332797 OR6K6Q8NGW6 343 aa13.75□□□□□ -0.21
CCDC28A-201ENST00000332797 WACQ9BTA9 647 aa13.75□□□□□ -0.21
CCDC28A-201ENST00000332797 HCAR1Q9BXC0 346 aa13.75□□□□□ -0.21
CCDC28A-201ENST00000332797 RIBC2Q9H4K1 309 aa13.75□□□□□ -0.21
CCDC28A-201ENST00000332797 CA10Q9NS85 328 aa13.75□□□□□ -0.21
CCDC28A-201ENST00000332797 TVP23BQ9NYZ1 205 aa13.75□□□□□ -0.21
CCDC28A-201ENST00000332797 ITGB1BP2Q9UKP3 347 aa13.75□□□□□ -0.21
CCDC28A-201ENST00000332797 ROS1P08922 2347 aa13.75□□□□□ -0.21
CCDC28A-201ENST00000332797 HEATR1Q9H583 2144 aaKnown RBP13.75□□□□□ -0.21
CCDC28A-201ENST00000332797 TVP23AA6NH52 213 aa13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 PRR23D1E9PI22 279 aaPredicted RBP13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 DOK2O60496 412 aa13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 DANCRP0C864 163 aa13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 PRR23D2P0DMB1 279 aaPredicted RBP13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 CCNOP22674 350 aa13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 EPHA2P29317 976 aa13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 TTKP33981 857 aa13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 SNAPC1Q16533 368 aa13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 ZNF544Q6NX49 715 aa13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 PLBD1Q6P4A8 553 aa13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 LYPD4Q6UWN0 246 aa13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 FBXL14Q8N1E6 418 aa13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 CBR4Q8N4T8 237 aa13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 NUP37Q8NFH4 326 aa13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 TMEM171Q8WVE6 324 aa13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 PIGTQ969N2 578 aa13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 MRPL22Q9NWU5 206 aaKnown RBP13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 SPEF1Q9Y4P9 236 aa13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 ORC6Q9Y5N6 252 aa13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 LHFPL6Q9Y693 200 aa13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 C5orf49A4QMS7 147 aa13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 ZAR1LA6NP61 321 aa13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 SGCEO43556 437 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms