RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 STEAP1Q9UHE8 339 aa9.29□□□□□ -0.92
CHD3-201ENST00000330494 FITM1A5D6W6 292 aa9.29□□□□□ -0.92
CHD3-201ENST00000330494 M0R1B8 84 aa9.29□□□□□ -0.92
CHD3-201ENST00000330494 UBCP0CG48 685 aaKnown RBP9.29□□□□□ -0.92
CHD3-201ENST00000330494 COL9A1P20849 921 aa9.29□□□□□ -0.92
CHD3-201ENST00000330494 NPY4RP50391 375 aa9.29□□□□□ -0.92
CHD3-201ENST00000330494 NDUFA6P56556 154 aa9.29□□□□□ -0.92
CHD3-201ENST00000330494 SCGB2A2Q13296 93 aa9.29□□□□□ -0.92
CHD3-201ENST00000330494 BCL2A1Q16548 175 aa9.29□□□□□ -0.92
CHD3-201ENST00000330494 ADPRMQ3LIE5 342 aa9.29□□□□□ -0.92
CHD3-201ENST00000330494 STEAP3Q658P3 488 aa9.29□□□□□ -0.92
CHD3-201ENST00000330494 GJC3Q8NFK1 279 aa9.29□□□□□ -0.92
CHD3-201ENST00000330494 SGK3Q96BR1 496 aa9.29□□□□□ -0.92
CHD3-201ENST00000330494 PKMYT1Q99640 499 aa9.29□□□□□ -0.92
CHD3-201ENST00000330494 SLC22A11Q9NSA0 550 aa9.29□□□□□ -0.92
CHD3-201ENST00000330494 LHX6Q9UPM6 363 aa9.29□□□□□ -0.92
CHD3-201ENST00000330494 MYO16Q9Y6X6 1858 aa9.29□□□□□ -0.92
CHD3-201ENST00000330494 CBY3A6NI87 242 aa9.29□□□□□ -0.92
CHD3-201ENST00000330494 HES1Q14469 280 aa9.29□□□□□ -0.92
CHD3-201ENST00000330494 ZMAT1Q5H9K5 638 aa9.29□□□□□ -0.92
CHD3-201ENST00000330494 HIST2H3PS2Q5TEC6 136 aa9.29□□□□□ -0.92
CHD3-201ENST00000330494 OR56B1Q8NGI3 324 aa9.29□□□□□ -0.92
CHD3-201ENST00000330494 ORAI1Q96D31 301 aa9.29□□□□□ -0.92
CHD3-201ENST00000330494 CRLF2Q9HC73 371 aa9.29□□□□□ -0.92
CHD3-201ENST00000330494 HINT3Q9NQE9 182 aaKnown RBP9.29□□□□□ -0.92
CHD3-201ENST00000330494 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.29□□□□□ -0.92
CHD3-201ENST00000330494 PLA2G3Q9NZ20 509 aa9.29□□□□□ -0.92
CHD3-201ENST00000330494 ASH2LQ9UBL3 628 aa9.29□□□□□ -0.92
CHD3-201ENST00000330494 TPT1P13693 172 aaKnown RBP9.28□□□□□ -0.92
CHD3-201ENST00000330494 CDAP32320 146 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 APOBEC1P41238 236 aaKnown RBP9.28□□□□□ -0.92
CHD3-201ENST00000330494 OR10A3P58181 314 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 RPL18Q07020 188 aaKnown RBP9.28□□□□□ -0.92
CHD3-201ENST00000330494 SLC10A1Q14973 349 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 TCTN3Q6NUS6 607 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 SLC22A24Q8N4F4 322 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 MENTQ9BUN1 341 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 RAB9BQ9NP90 201 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 PTTG3PQ9NZH4 202 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 MDFIC2A0A1B0GVS7 189 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 ZNF701M0R085 212 aaPredicted RBP9.28□□□□□ -0.92
CHD3-201ENST00000330494 PHF1O43189 567 aaPredicted RBP9.28□□□□□ -0.92
CHD3-201ENST00000330494 PIPP12273 146 aaPredicted RBP9.28□□□□□ -0.92
CHD3-201ENST00000330494 HTD2P86397 168 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 ACKR1Q16570 336 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 CST9LP1Q5W188 147 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 DEFB108BQ8NET1 73 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 RNF170Q96K19 258 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 COL11A2P13942 1736 aaPredicted RBP9.28□□□□□ -0.92
CHD3-201ENST00000330494 FAM221AA4D161 298 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 PDGFAP04085 211 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 PCSK6P29122 969 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 PPP1CAP62136 330 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 TMEM71Q6P5X7 295 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 RHOXF1Q8NHV9 184 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 RNF128Q8TEB7 428 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 NKX3-1Q99801 234 aaPredicted RBP9.28□□□□□ -0.92
CHD3-201ENST00000330494 POFUT1Q9H488 388 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 GPR55Q9Y2T6 319 aaPredicted RBP9.28□□□□□ -0.92
CHD3-201ENST00000330494 MED6O75586 246 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 PEX11BO96011 259 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 HOXB3P14651 431 aaPredicted RBP9.28□□□□□ -0.92
CHD3-201ENST00000330494 RPS19P39019 145 aaKnown RBP9.28□□□□□ -0.92
CHD3-201ENST00000330494 RPP30P78346 268 aaKnown RBP9.28□□□□□ -0.92
CHD3-201ENST00000330494 GPR176Q14439 515 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 EBPQ15125 230 aaKnown RBP9.28□□□□□ -0.92
CHD3-201ENST00000330494 LIPNQ5VXI9 398 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 MAML2Q8IZL2 1156 aaPredicted RBP9.28□□□□□ -0.92
CHD3-201ENST00000330494 OR1J2Q8NGS2 313 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 CORINQ9Y5Q5 1042 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 ZNF195O14628 629 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 SIX6O95475 246 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 GSTP1P09211 210 aaKnown RBP9.28□□□□□ -0.92
CHD3-201ENST00000330494 NDUFB7P17568 137 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 SOX18P35713 384 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 MAP2K6P52564 334 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 DUSP8Q13202 625 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 OR8G1Q15617 311 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 ESCO2Q56NI9 601 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 RNLSQ5VYX0 342 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 C1QTNF3Q9BXJ4 246 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 ISG20L2Q9H9L3 353 aaKnown RBP9.28□□□□□ -0.92
CHD3-201ENST00000330494 FZD6O60353 706 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 RRAS2P62070 204 aaPredicted RBP9.28□□□□□ -0.92
CHD3-201ENST00000330494 C5orf46Q6UWT4 87 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 C16orf47Q6ZP98 133 aaPredicted RBP9.28□□□□□ -0.92
CHD3-201ENST00000330494 SPRED2Q7Z698 418 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 PLCXD1Q9NUJ7 323 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 TMEM100Q9NV29 134 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 SLC17A4Q9Y2C5 497 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 ATP23Q9Y6H3 246 aa9.28□□□□□ -0.92
CHD3-201ENST00000330494 A0A1W2PPV4 95 aa9.27□□□□□ -0.92
CHD3-201ENST00000330494 TMEM221A6NGB7 291 aa9.27□□□□□ -0.92
CHD3-201ENST00000330494 DEGS1O15121 323 aa9.27□□□□□ -0.92
CHD3-201ENST00000330494 CXCL13O43927 109 aa9.27□□□□□ -0.92
CHD3-201ENST00000330494 GPRIN2O60269 458 aa9.27□□□□□ -0.92
CHD3-201ENST00000330494 ZIC2O95409 532 aaPredicted RBP9.27□□□□□ -0.92
CHD3-201ENST00000330494 ANXA7P20073 488 aaKnown RBP9.27□□□□□ -0.92
CHD3-201ENST00000330494 CNRIP1Q96F85 164 aaPredicted RBP9.27□□□□□ -0.92
CHD3-201ENST00000330494 SLC6A13Q9NSD5 602 aa9.27□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms