RNA–Protein interactions for RNA: ENST00000299543.8

CTDP1-202, Transcript of CTD phosphatase subunit 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CTDP1, Length 3,380 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1-202ENST00000299543 LRRC61Q9BV99 259 aa12.16□□□□□ -0.46
CTDP1-202ENST00000299543 ZNF471Q9BX82 626 aaPredicted RBP12.16□□□□□ -0.46
CTDP1-202ENST00000299543 MFFQ9GZY8 342 aa12.16□□□□□ -0.46
CTDP1-202ENST00000299543 ELOVL3Q9HB03 270 aa12.16□□□□□ -0.46
CTDP1-202ENST00000299543 ZNF275Q9NSD4 429 aaPredicted RBP12.16□□□□□ -0.46
CTDP1-202ENST00000299543 ASF1BQ9NVP2 202 aa12.16□□□□□ -0.46
CTDP1-202ENST00000299543 DUX4Q9UBX2 424 aa12.16□□□□□ -0.46
CTDP1-202ENST00000299543 PRODH2Q9UF12 536 aa12.16□□□□□ -0.46
CTDP1-202ENST00000299543 HS3ST3A1Q9Y663 406 aa12.16□□□□□ -0.46
CTDP1-202ENST00000299543 GABRA1P14867 456 aa12.15□□□□□ -0.46
CTDP1-202ENST00000299543 ADCYAP1P18509 176 aa12.15□□□□□ -0.46
CTDP1-202ENST00000299543 IL12BP29460 328 aa12.15□□□□□ -0.46
CTDP1-202ENST00000299543 EGR4Q05215 589 aa12.15□□□□□ -0.46
CTDP1-202ENST00000299543 MEP1BQ16820 701 aa12.15□□□□□ -0.46
CTDP1-202ENST00000299543 MESTQ5EB52 335 aa12.15□□□□□ -0.46
CTDP1-202ENST00000299543 FAM69AQ5T7M9 428 aa12.15□□□□□ -0.46
CTDP1-202ENST00000299543 OR2G2Q8NGZ5 317 aa12.15□□□□□ -0.46
CTDP1-202ENST00000299543 THAP3Q8WTV1 239 aaPredicted RBP12.15□□□□□ -0.46
CTDP1-202ENST00000299543 TSPAN32Q96QS1 320 aa12.15□□□□□ -0.46
CTDP1-202ENST00000299543 CDCA3Q99618 268 aaPredicted RBP12.15□□□□□ -0.46
CTDP1-202ENST00000299543 GHRLQ9UBU3 117 aa12.15□□□□□ -0.46
CTDP1-202ENST00000299543 MSRAQ9UJ68 235 aa12.15□□□□□ -0.46
CTDP1-202ENST00000299543 PYCARD-AS1I3L0S3 204 aa12.15□□□□□ -0.46
CTDP1-202ENST00000299543 CREBL2O60519 120 aaPredicted RBP12.15□□□□□ -0.46
CTDP1-202ENST00000299543 SLC16A7O60669 478 aa12.15□□□□□ -0.46
CTDP1-202ENST00000299543 WISP1O95388 367 aa12.15□□□□□ -0.46
CTDP1-202ENST00000299543 FREM3P0C091 2139 aa12.15□□□□□ -0.46
CTDP1-202ENST00000299543 PNMTP11086 282 aa12.15□□□□□ -0.46
CTDP1-202ENST00000299543 GTF2F2P13984 249 aa12.15□□□□□ -0.46
CTDP1-202ENST00000299543 MRPS21P82921 87 aaKnown RBP12.15□□□□□ -0.46
CTDP1-202ENST00000299543 SRSF3P84103 164 aaKnown RBP12.15□□□□□ -0.46
CTDP1-202ENST00000299543 CCINQ13939 588 aa12.15□□□□□ -0.46
CTDP1-202ENST00000299543 PRTGQ2VWP7 1150 aa12.15□□□□□ -0.46
CTDP1-202ENST00000299543 KLHL26Q53HC5 615 aa12.15□□□□□ -0.46
CTDP1-202ENST00000299543 OR7E24Q6IFN5 339 aa12.15□□□□□ -0.46
CTDP1-202ENST00000299543 MDGA2Q7Z553 956 aa12.15□□□□□ -0.46
CTDP1-202ENST00000299543 RXFP4Q8TDU9 374 aa12.15□□□□□ -0.46
CTDP1-202ENST00000299543 RHOVQ96L33 236 aa12.15□□□□□ -0.46
CTDP1-202ENST00000299543 INTS14Q96SY0 518 aa12.15□□□□□ -0.46
CTDP1-202ENST00000299543 PAPOLGQ9BWT3 736 aaKnown RBP12.15□□□□□ -0.46
CTDP1-202ENST00000299543 NMNAT2Q9BZQ4 307 aa12.15□□□□□ -0.46
CTDP1-202ENST00000299543 A0A1W2PPE3 182 aa12.15□□□□□ -0.47
CTDP1-202ENST00000299543 TMEM150CB9EJG8 249 aa12.15□□□□□ -0.47
CTDP1-202ENST00000299543 ACOT7O00154 380 aa12.15□□□□□ -0.47
CTDP1-202ENST00000299543 OR2T1O43869 369 aa12.15□□□□□ -0.47
CTDP1-202ENST00000299543 SRPX2O60687 465 aaPredicted RBP12.15□□□□□ -0.47
CTDP1-202ENST00000299543 UPK3AO75631 287 aa12.15□□□□□ -0.47
CTDP1-202ENST00000299543 SORDQ00796 357 aa12.15□□□□□ -0.47
CTDP1-202ENST00000299543 TDGQ13569 410 aa12.15□□□□□ -0.47
CTDP1-202ENST00000299543 VWA2Q5GFL6 755 aa12.15□□□□□ -0.47
CTDP1-202ENST00000299543 CHRDL2Q6WN34 429 aa12.15□□□□□ -0.47
CTDP1-202ENST00000299543 ZNF627Q7L945 461 aa12.15□□□□□ -0.47
CTDP1-202ENST00000299543 ATG4DQ86TL0 474 aaPredicted RBP12.15□□□□□ -0.47
CTDP1-202ENST00000299543 ZNF615Q8N8J6 731 aa12.15□□□□□ -0.47
CTDP1-202ENST00000299543 PXT1Q8NFP0 134 aa12.15□□□□□ -0.47
CTDP1-202ENST00000299543 OR1M1Q8NGA1 313 aa12.15□□□□□ -0.47
CTDP1-202ENST00000299543 OR6S1Q8NH40 331 aa12.15□□□□□ -0.47
CTDP1-202ENST00000299543 MRPL38Q96DV4 380 aaKnown RBP12.15□□□□□ -0.47
CTDP1-202ENST00000299543 TBL1XR1Q9BZK7 514 aa12.15□□□□□ -0.47
CTDP1-202ENST00000299543 NDRG3Q9UGV2 375 aa12.15□□□□□ -0.47
CTDP1-202ENST00000299543 TICRRQ7Z2Z1 1910 aa12.15□□□□□ -0.47
CTDP1-202ENST00000299543 LOC100509620A0A075B734 347 aa12.14□□□□□ -0.47
CTDP1-202ENST00000299543 GSTZ1O43708 216 aaPredicted RBP12.14□□□□□ -0.47
CTDP1-202ENST00000299543 PDZK1IP1Q13113 114 aa12.14□□□□□ -0.47
CTDP1-202ENST00000299543 CCDC157Q569K6 752 aa12.14□□□□□ -0.47
CTDP1-202ENST00000299543 CDPF1Q6NVV7 123 aa12.14□□□□□ -0.47
CTDP1-202ENST00000299543 HSD17B13Q7Z5P4 300 aaPredicted RBP12.14□□□□□ -0.47
CTDP1-202ENST00000299543 TMED4Q7Z7H5 227 aa12.14□□□□□ -0.47
CTDP1-202ENST00000299543 ZNF227Q86WZ6 799 aa12.14□□□□□ -0.47
CTDP1-202ENST00000299543 GPR148Q8TDV2 347 aa12.14□□□□□ -0.47
CTDP1-202ENST00000299543 CCDC74AQ96AQ1 378 aa12.14□□□□□ -0.47
CTDP1-202ENST00000299543 HAVCR1Q96D42 359 aa12.14□□□□□ -0.47
CTDP1-202ENST00000299543 ATG5Q9H1Y0 275 aa12.14□□□□□ -0.47
CTDP1-202ENST00000299543 PTTG3PQ9NZH4 202 aa12.14□□□□□ -0.47
CTDP1-202ENST00000299543 DCDC2BA2VCK2 349 aa12.14□□□□□ -0.47
CTDP1-202ENST00000299543 FAM221BA6H8Z2 402 aa12.14□□□□□ -0.47
CTDP1-202ENST00000299543 NSA2O95478 260 aaKnown RBP12.14□□□□□ -0.47
CTDP1-202ENST00000299543 HPP00738 406 aa12.14□□□□□ -0.47
CTDP1-202ENST00000299543 MYF5P13349 255 aa12.14□□□□□ -0.47
CTDP1-202ENST00000299543 MAPK3P27361 379 aaPredicted RBP12.14□□□□□ -0.47
CTDP1-202ENST00000299543 BLKP51451 505 aa12.14□□□□□ -0.47
CTDP1-202ENST00000299543 KIF26BQ2KJY2 2108 aa12.14□□□□□ -0.47
CTDP1-202ENST00000299543 DCAF12L2Q5VW00 463 aa12.14□□□□□ -0.47
CTDP1-202ENST00000299543 ETV3LQ6ZN32 361 aa12.14□□□□□ -0.47
CTDP1-202ENST00000299543 GPN1Q9HCN4 374 aaPredicted RBP12.14□□□□□ -0.47
CTDP1-202ENST00000299543 PDE7BQ9NP56 450 aa12.14□□□□□ -0.47
CTDP1-202ENST00000299543 HIF3AQ9Y2N7 669 aa12.14□□□□□ -0.47
CTDP1-202ENST00000299543 CLDN16Q9Y5I7 305 aa12.14□□□□□ -0.47
CTDP1-202ENST00000299543 NPBWR1P48145 328 aa12.13□□□□□ -0.47
CTDP1-202ENST00000299543 POU3F4P49335 361 aa12.13□□□□□ -0.47
CTDP1-202ENST00000299543 GMFBP60983 142 aa12.13□□□□□ -0.47
CTDP1-202ENST00000299543 SEC61A1P61619 476 aaKnown RBP12.13□□□□□ -0.47
CTDP1-202ENST00000299543 FUT7Q11130 342 aa12.13□□□□□ -0.47
CTDP1-202ENST00000299543 ZNF124Q15973 351 aa12.13□□□□□ -0.47
CTDP1-202ENST00000299543 C4orf46Q504U0 113 aa12.13□□□□□ -0.47
CTDP1-202ENST00000299543 KIAA0895LQ68EN5 471 aa12.13□□□□□ -0.47
CTDP1-202ENST00000299543 C16orf47Q6ZP98 133 aaPredicted RBP12.13□□□□□ -0.47
CTDP1-202ENST00000299543 OR5T2Q8NGG2 359 aa12.13□□□□□ -0.47
CTDP1-202ENST00000299543 MIB2Q96AX9 1013 aa12.13□□□□□ -0.47
CTDP1-202ENST00000299543 TCTN2Q96GX1 697 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms