RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 F5H697 171 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 HMGN2P05204 90 aaKnown RBP12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 COL5A2P05997 1499 aaPredicted RBP12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 DIDO1Q9BTC0 2240 aaKnown RBP12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 MS4A18H0YCH9 400 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 MLF2Q15773 248 aaPredicted RBP12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 MS4A18Q3C1V0 323 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 NDRG4Q9ULP0 352 aaKnown RBP12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 A0A1B0GTW7 788 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 SNNO75324 88 aaPredicted RBP12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 CST2P09228 141 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 C14orf80Q86SX3 495 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 ARHGEF39Q8N4T4 335 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 GHSRQ92847 366 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 FOXN4Q96NZ1 517 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 A0A0A6YYJ9 748 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 A0A1W2PPQ1 181 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 EPHA2P29317 976 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 ZADH2Q8N4Q0 377 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 MFSD9Q8NBP5 474 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 KAZALD1Q96I82 304 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 SYT17Q9BSW7 474 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 ACOT8O14734 319 aa12.83□□□□□ -0.35
CCDC88A-201ENST00000263630 CDCA2Q69YH5 1023 aaPredicted RBP12.83□□□□□ -0.35
CCDC88A-201ENST00000263630 ZNF343Q6P1L6 599 aa12.83□□□□□ -0.35
CCDC88A-201ENST00000263630 CPEB2Q7Z5Q1 589 aaKnown RBP12.83□□□□□ -0.35
CCDC88A-201ENST00000263630 C17orf78Q8N4C9 275 aa12.83□□□□□ -0.35
CCDC88A-201ENST00000263630 PRSS3P2Q8NHM4 247 aa12.83□□□□□ -0.35
CCDC88A-201ENST00000263630 EDARADDQ8WWZ3 215 aa12.83□□□□□ -0.35
CCDC88A-201ENST00000263630 MOB3AQ96BX8 217 aa12.83□□□□□ -0.35
CCDC88A-201ENST00000263630 PMCHP20382 165 aa12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 ITGB7P26010 798 aa12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 TCTAP57738 103 aa12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 ACKR1Q16570 336 aa12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 ACOD1A6NK06 481 aa12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 CDC34P49427 236 aaPredicted RBP12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 ARSDP51689 593 aa12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 DHODHQ02127 395 aa12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 OR5M10Q6IEU7 315 aa12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 TMEM123Q8N131 208 aa12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 OR5AP2Q8NGF4 316 aa12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 AKR7LQ8NHP1 331 aa12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 COPS9Q8WXC6 57 aa12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 RBM14Q96PK6 669 aaKnown RBP12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 SLC25A4P12235 298 aa12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 ZXDBP98169 803 aa12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 CEACAM7Q14002 265 aa12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 MTURNQ8N3F0 131 aa12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 OR5D18Q8NGL1 313 aa12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 OR5D13Q8NGL4 314 aa12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 OR51H1Q8NH63 302 aa12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 OR1L1Q8NH94 360 aa12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 THOC3Q96J01 351 aaKnown RBP12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 MIEN1Q9BRT3 115 aa12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 DOK2O60496 412 aa12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 ATP1B1P05026 303 aa12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 PSAPL1Q6NUJ1 521 aa12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 ASH2LQ9UBL3 628 aa12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 NDRG3Q9UGV2 375 aa12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 TOMM20LQ6UXN7 152 aa12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 DPPA4Q7L190 304 aa12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 TARBP1Q13395 1621 aaKnown RBP12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 M0R2Z0 102 aa12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 KIAA1024LP59773 190 aa12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 PPP1CAP62136 330 aa12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 DCDP81605 110 aaKnown RBP12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 RPL24P83731 157 aaKnown RBP12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 B3GNT9Q6UX72 402 aa12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 ZNF761Q86XN6 746 aaPredicted RBP12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 ZNF547Q8IVP9 402 aa12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 OR1L3Q8NH93 324 aa12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 KCND3Q9UK17 655 aa12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 PPLO60437 1756 aa12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 M0QZK8 103 aa12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 GGCTO75223 188 aaKnown RBP12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 CALCBP10092 127 aa12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 MAOBP27338 520 aa12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 IGDCC3Q8IVU1 814 aa12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 GOT1L1Q8NHS2 421 aaPredicted RBP12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 FAM3CQ92520 227 aa12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 PTDSS2Q9BVG9 487 aa12.83□□□□□ -0.36
CCDC88A-201ENST00000263630 PREX1Q8TCU6 1659 aa12.82□□□□□ -0.36
CCDC88A-201ENST00000263630 ARR3P36575 388 aa12.82□□□□□ -0.36
CCDC88A-201ENST00000263630 TTC9Q92623 222 aa12.82□□□□□ -0.36
CCDC88A-201ENST00000263630 TMEM208Q9BTX3 173 aa12.82□□□□□ -0.36
CCDC88A-201ENST00000263630 MRPS2Q9Y399 296 aaKnown RBP12.82□□□□□ -0.36
CCDC88A-201ENST00000263630 LTN1O94822 1766 aa12.82□□□□□ -0.36
CCDC88A-201ENST00000263630 MT-ATP6P00846 226 aa12.82□□□□□ -0.36
CCDC88A-201ENST00000263630 OR8G3PP0DMU2 310 aa12.82□□□□□ -0.36
CCDC88A-201ENST00000263630 CCR9P51686 369 aa12.82□□□□□ -0.36
CCDC88A-201ENST00000263630 WDR73Q6P4I2 378 aa12.82□□□□□ -0.36
CCDC88A-201ENST00000263630 RNASEKQ6P5S7 137 aaKnown RBP12.82□□□□□ -0.36
CCDC88A-201ENST00000263630 DTD1Q8TEA8 209 aa12.82□□□□□ -0.36
CCDC88A-201ENST00000263630 CD80P33681 288 aa12.82□□□□□ -0.36
CCDC88A-201ENST00000263630 SHISA6Q6ZSJ9 500 aa12.82□□□□□ -0.36
CCDC88A-201ENST00000263630 DOK3Q7L591 496 aa12.82□□□□□ -0.36
CCDC88A-201ENST00000263630 MAP1LC3CQ9BXW4 147 aa12.82□□□□□ -0.36
CCDC88A-201ENST00000263630 LMO7Q8WWI1 1683 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms