RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 EIF2S3P41091 472 aaKnown RBP10.38□□□□□ -0.75
VPS4A-201ENST00000254950 SOX8P57073 446 aa10.38□□□□□ -0.75
VPS4A-201ENST00000254950 CDC20Q12834 499 aa10.38□□□□□ -0.75
VPS4A-201ENST00000254950 OR2G2Q8NGZ5 317 aa10.38□□□□□ -0.75
VPS4A-201ENST00000254950 TBC1D15Q8TC07 691 aa10.38□□□□□ -0.75
VPS4A-201ENST00000254950 ASB10Q8WXI3 467 aa10.38□□□□□ -0.75
VPS4A-201ENST00000254950 SIGLEC11Q96RL6 698 aa10.38□□□□□ -0.75
VPS4A-201ENST00000254950 SF3B5Q9BWJ5 86 aaKnown RBP10.38□□□□□ -0.75
VPS4A-201ENST00000254950 GPN1Q9HCN4 374 aaPredicted RBP10.38□□□□□ -0.75
VPS4A-201ENST00000254950 ZC4H2Q9NQZ6 224 aa10.38□□□□□ -0.75
VPS4A-201ENST00000254950 SLC5A6Q9Y289 635 aa10.38□□□□□ -0.75
VPS4A-201ENST00000254950 NCR1O76036 304 aa10.37□□□□□ -0.75
VPS4A-201ENST00000254950 DXOO77932 396 aaKnown RBP10.37□□□□□ -0.75
VPS4A-201ENST00000254950 CBX3Q13185 183 aa10.37□□□□□ -0.75
VPS4A-201ENST00000254950 LIN54Q6MZP7 749 aa10.37□□□□□ -0.75
VPS4A-201ENST00000254950 SFXN4Q6P4A7 337 aa10.37□□□□□ -0.75
VPS4A-201ENST00000254950 FIP1L1Q6UN15 594 aaKnown RBP10.37□□□□□ -0.75
VPS4A-201ENST00000254950 LRRC28Q86X40 367 aaPredicted RBP10.37□□□□□ -0.75
VPS4A-201ENST00000254950 SULF2Q8IWU5 870 aa10.37□□□□□ -0.75
VPS4A-201ENST00000254950 OR8S1Q8NH09 359 aa10.37□□□□□ -0.75
VPS4A-201ENST00000254950 RNF167Q9H6Y7 350 aa10.37□□□□□ -0.75
VPS4A-201ENST00000254950 POU2F3Q9UKI9 436 aa10.37□□□□□ -0.75
VPS4A-201ENST00000254950 C5orf42Q9H799 3197 aa10.37□□□□□ -0.75
VPS4A-201ENST00000254950 ANKRD33BA6NCL7 494 aa10.37□□□□□ -0.75
VPS4A-201ENST00000254950 RAF1P04049 648 aa10.37□□□□□ -0.75
VPS4A-201ENST00000254950 CX3CR1P49238 355 aa10.37□□□□□ -0.75
VPS4A-201ENST00000254950 FABP5Q01469 135 aa10.37□□□□□ -0.75
VPS4A-201ENST00000254950 CNN3Q15417 329 aaKnown RBP10.37□□□□□ -0.75
VPS4A-201ENST00000254950 ZNF441Q8N8Z8 693 aa10.37□□□□□ -0.75
VPS4A-201ENST00000254950 OR1J2Q8NGS2 313 aa10.37□□□□□ -0.75
VPS4A-201ENST00000254950 ATF6BQ99941 703 aa10.37□□□□□ -0.75
VPS4A-201ENST00000254950 SLCO5A1Q9H2Y9 848 aa10.37□□□□□ -0.75
VPS4A-201ENST00000254950 DPAGT1Q9H3H5 408 aa10.37□□□□□ -0.75
VPS4A-201ENST00000254950 LUZP4Q9P127 313 aa10.37□□□□□ -0.75
VPS4A-201ENST00000254950 SPEF1Q9Y4P9 236 aa10.37□□□□□ -0.75
VPS4A-201ENST00000254950 IGKV1D-42A0A075B6H8 117 aa10.37□□□□□ -0.75
VPS4A-201ENST00000254950 PMS2P1A4D2B8 440 aa10.37□□□□□ -0.75
VPS4A-201ENST00000254950 TTLL8A6PVC2 850 aa10.37□□□□□ -0.75
VPS4A-201ENST00000254950 C17orf51A8MQB3 221 aa10.37□□□□□ -0.75
VPS4A-201ENST00000254950 HPGDSO60760 199 aa10.37□□□□□ -0.75
VPS4A-201ENST00000254950 FZD7O75084 574 aa10.37□□□□□ -0.75
VPS4A-201ENST00000254950 GABRB1P18505 474 aa10.37□□□□□ -0.75
VPS4A-201ENST00000254950 SLC2A5P22732 501 aa10.37□□□□□ -0.75
VPS4A-201ENST00000254950 MAP2K3P46734 347 aa10.37□□□□□ -0.75
VPS4A-201ENST00000254950 PITPNBP48739 271 aa10.37□□□□□ -0.75
VPS4A-201ENST00000254950 P2RY14Q15391 338 aa10.37□□□□□ -0.75
VPS4A-201ENST00000254950 LINC00299Q6ZSB3 139 aa10.37□□□□□ -0.75
VPS4A-201ENST00000254950 PELI1Q96FA3 418 aa10.37□□□□□ -0.75
VPS4A-201ENST00000254950 SNX18Q96RF0 628 aa10.37□□□□□ -0.75
VPS4A-201ENST00000254950 GPX7Q96SL4 187 aaPredicted RBP10.37□□□□□ -0.75
VPS4A-201ENST00000254950 MESP1Q9BRJ9 268 aa10.37□□□□□ -0.75
VPS4A-201ENST00000254950 R4GMQ9 66 aa10.37□□□□□ -0.75
VPS4A-201ENST00000254950 MUC22E2RYF6 1773 aaPredicted RBP10.36□□□□□ -0.75
VPS4A-201ENST00000254950 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.36□□□□□ -0.75
VPS4A-201ENST00000254950 LOC107986453A0A1B0GWG9 222 aa10.36□□□□□ -0.75
VPS4A-201ENST00000254950 A6NLC8 198 aa10.36□□□□□ -0.75
VPS4A-201ENST00000254950 SCGNO76038 276 aa10.36□□□□□ -0.75
VPS4A-201ENST00000254950 CDAP32320 146 aa10.36□□□□□ -0.75
VPS4A-201ENST00000254950 CLN3Q13286 438 aa10.36□□□□□ -0.75
VPS4A-201ENST00000254950 ATP1A1-AS1Q5TC04 95 aa10.36□□□□□ -0.75
VPS4A-201ENST00000254950 ZNF385CQ66K41 422 aaPredicted RBP10.36□□□□□ -0.75
VPS4A-201ENST00000254950 MCHR2Q969V1 340 aa10.36□□□□□ -0.75
VPS4A-201ENST00000254950 FOXB1Q99853 325 aa10.36□□□□□ -0.75
VPS4A-201ENST00000254950 OR51B6Q9H340 312 aa10.36□□□□□ -0.75
VPS4A-201ENST00000254950 COL4A3Q01955 1670 aa10.36□□□□□ -0.75
VPS4A-201ENST00000254950 TRAV18A0A075B6X5 111 aa10.36□□□□□ -0.75
VPS4A-201ENST00000254950 ANKRD30BLA7E2S9 258 aa10.36□□□□□ -0.75
VPS4A-201ENST00000254950 EEF1E1-BLOC1S5C9J1V9 151 aa10.36□□□□□ -0.75
VPS4A-201ENST00000254950 M0R135 149 aa10.36□□□□□ -0.75
VPS4A-201ENST00000254950 B4GALT1P15291 398 aa10.36□□□□□ -0.75
VPS4A-201ENST00000254950 BDKRB2P30411 391 aa10.36□□□□□ -0.75
VPS4A-201ENST00000254950 RAB25P57735 213 aa10.36□□□□□ -0.75
VPS4A-201ENST00000254950 ZP4Q12836 540 aa10.36□□□□□ -0.75
VPS4A-201ENST00000254950 RNLSQ5VYX0 342 aa10.36□□□□□ -0.75
VPS4A-201ENST00000254950 OR2A2Q6IF42 318 aa10.36□□□□□ -0.75
VPS4A-201ENST00000254950 ZC3HAV1Q7Z2W4 902 aaKnown RBP10.36□□□□□ -0.75
VPS4A-201ENST00000254950 TMEM17Q86X19 198 aa10.36□□□□□ -0.75
VPS4A-201ENST00000254950 ARHGEF39Q8N4T4 335 aa10.36□□□□□ -0.75
VPS4A-201ENST00000254950 FBLIM1Q8WUP2 373 aa10.36□□□□□ -0.75
VPS4A-201ENST00000254950 AKAP1Q92667 903 aaKnown RBP eCLIP10.36□□□□□ -0.758e-8■■■■■ 27.2
VPS4A-201ENST00000254950 FGGYQ96C11 551 aa10.36□□□□□ -0.75
VPS4A-201ENST00000254950 ZNF799Q96GE5 643 aa10.36□□□□□ -0.75
VPS4A-201ENST00000254950 NEDD4LQ96PU5 975 aa10.36□□□□□ -0.75
VPS4A-201ENST00000254950 TTTY12Q9BZ98 90 aa10.36□□□□□ -0.75
VPS4A-201ENST00000254950 CRLF2Q9HC73 371 aa10.36□□□□□ -0.75
VPS4A-201ENST00000254950 MRPS18AQ9NVS2 196 aaKnown RBP10.36□□□□□ -0.75
VPS4A-201ENST00000254950 CHCHD2Q9Y6H1 151 aaPredicted RBP10.36□□□□□ -0.75
VPS4A-201ENST00000254950 A0A0J9YW62 118 aa10.36□□□□□ -0.75
VPS4A-201ENST00000254950 TRIM64CA6NLI5 447 aa10.36□□□□□ -0.75
VPS4A-201ENST00000254950 MPIG6BO95866 241 aa10.36□□□□□ -0.75
VPS4A-201ENST00000254950 ARSBP15848 533 aa10.36□□□□□ -0.75
VPS4A-201ENST00000254950 SRMP19623 302 aa10.36□□□□□ -0.75
VPS4A-201ENST00000254950 S100GP29377 79 aa10.36□□□□□ -0.75
VPS4A-201ENST00000254950 GCH1P30793 250 aa10.36□□□□□ -0.75
VPS4A-201ENST00000254950 AQP6Q13520 282 aa10.36□□□□□ -0.75
VPS4A-201ENST00000254950 RSU1Q15404 277 aa10.36□□□□□ -0.75
VPS4A-201ENST00000254950 CDCP2Q5VXM1 449 aa10.36□□□□□ -0.75
VPS4A-201ENST00000254950 OR5M9Q8NGP3 310 aa10.36□□□□□ -0.75
VPS4A-201ENST00000254950 SETD6Q8TBK2 473 aa10.36□□□□□ -0.75
VPS4A-201ENST00000254950 DYNC2LI1Q8TCX1 351 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms