RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 NDUFS8O00217 210 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 FZD6O60353 706 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 ZNF250P15622 560 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 ACKR3P25106 362 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 ECH1Q13011 328 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 TIGD5Q53EQ6 642 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 EGLN2Q96KS0 407 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 NIPSNAP1Q9BPW8 284 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 MAP1LC3BQ9GZQ8 125 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 GSX1Q9H4S2 264 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-220ENST00000641603 MSRAQ9UJ68 235 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 TNFSF18Q9UNG2 199 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 TOPAZ1Q8N9V7 1692 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 SYNGR4O95473 234 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 CTAG1AP78358 180 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 EVX2Q03828 476 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 UEVLDQ8IX04 471 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 NRIP2Q9BQI9 281 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 DNAJC5Q9H3Z4 198 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 SPATA6Q9NWH7 488 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-220ENST00000641603 MYH1P12882 1939 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 MYH2Q9UKX2 1941 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 MYH4Q9Y623 1939 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 PLCH1Q4KWH8 1693 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 MAST2Q6P0Q8 1798 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-220ENST00000641603 SLC38A8A6NNN8 435 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 DPP4P27487 766 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 SRP14P37108 136 aaKnown RBP4.29□□□□□ -1.72
SCN1A-220ENST00000641603 ST3GAL2Q16842 350 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 AWAT1Q58HT5 328 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 FFAR4Q5NUL3 377 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 TMEM191AQ9H0A3 160 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 CDC42EP3Q9UKI2 254 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 CFAP20Q9Y6A4 193 aaKnown RBP4.29□□□□□ -1.72
SCN1A-220ENST00000641603 PEAK1Q9H792 1746 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 K7EQM0 130 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 FGF18O76093 207 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 MPC2O95563 127 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 PPP1R3DO95685 299 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 MPIG6BO95866 241 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 NPBWR2P48146 333 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 FABP5Q01469 135 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 MICBQ29980 383 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 LIPIQ6XZB0 460 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 CISD2Q8N5K1 135 aaKnown RBP4.29□□□□□ -1.72
SCN1A-220ENST00000641603 TOMM40LQ969M1 308 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 WDR83Q9BRX9 315 aaKnown RBP4.29□□□□□ -1.72
SCN1A-220ENST00000641603 AUNIPQ9H7T9 357 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 PLEKHF2Q9H8W4 249 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 MYOZ1Q9NP98 299 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-220ENST00000641603 FZD3Q9NPG1 666 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 RNF19AQ9NV58 838 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 IL36AQ9UHA7 158 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 SLC45A1Q9Y2W3 748 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 NUMA1Q14980 2115 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 TSPAN6O43657 245 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 HPP00738 406 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 FURINP09958 794 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 STAG3L3P0CL85 134 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 RPL13AP40429 203 aaKnown RBP4.29□□□□□ -1.72
SCN1A-220ENST00000641603 PLP2Q04941 152 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 VASNQ6EMK4 673 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 ERN2Q76MJ5 926 aaKnown RBP4.29□□□□□ -1.72
SCN1A-220ENST00000641603 LRRTM3Q86VH5 581 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 R3HDM4Q96D70 268 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 DCBLD2Q96PD2 775 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 TEAD3Q99594 435 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 A0A087WWC5 75 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 IQCF5A8MTL0 148 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 DDAH2O95865 285 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 HMGN2P05204 90 aaKnown RBP4.29□□□□□ -1.72
SCN1A-220ENST00000641603 FUT1P19526 365 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 AOAHP28039 575 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 OR3A1P47881 315 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 TAS2R45P59539 299 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 CTXN1P60606 82 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 HSF1Q00613 529 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 ZNF90Q03938 601 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 GRM7Q14831 915 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 ISXQ2M1V0 245 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 ARHGAP11BQ3KRB8 267 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 BEX5Q5H9J7 111 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 FAM71E1Q6IPT2 247 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 TECPR1Q7Z6L1 1165 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 TP53I13Q8NBR0 393 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-220ENST00000641603 FAM3CQ92520 227 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 PTX4Q96A99 478 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 LMF1Q96S06 567 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 TRMT61BQ9BVS5 477 aaKnown RBP4.29□□□□□ -1.72
SCN1A-220ENST00000641603 TM7SF3Q9NS93 570 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 SLAMF8Q9P0V8 285 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 SRPK3Q9UPE1 567 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 USP22Q9UPT9 525 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 KCPQ6ZWJ8 1503 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 CICQ96RK0 1608 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-220ENST00000641603 PLSCR5A0PG75 271 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 SIGLEC5O15389 551 aa4.29□□□□□ -1.72
SCN1A-220ENST00000641603 EIF3GO75821 320 aaKnown RBP eCLIP4.29□□□□□ -1.72
SCN1A-220ENST00000641603 CLDN7O95471 211 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms