RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 AUP1Q9Y679 476 aa13.82□□□□□ -0.2
CLN3-264ENST00000637985 CAPN7Q9Y6W3 813 aa13.82□□□□□ -0.2
CLN3-264ENST00000637985 SLC22A31A6NKX4 558 aa13.81□□□□□ -0.2
CLN3-264ENST00000637985 FAM220BPB1ANY3 271 aa13.81□□□□□ -0.2
CLN3-264ENST00000637985 UBL3O95164 117 aa13.81□□□□□ -0.2
CLN3-264ENST00000637985 MT-ND1P03886 318 aa13.81□□□□□ -0.2
CLN3-264ENST00000637985 THRBP10828 461 aa13.81□□□□□ -0.2
CLN3-264ENST00000637985 UMPSP11172 480 aa13.81□□□□□ -0.2
CLN3-264ENST00000637985 B4GALT1P15291 398 aa13.81□□□□□ -0.2
CLN3-264ENST00000637985 KDELR2P33947 212 aa13.81□□□□□ -0.2
CLN3-264ENST00000637985 KRTAP10-3P60369 221 aa13.81□□□□□ -0.2
CLN3-264ENST00000637985 GUCY1A3Q02108 690 aa13.81□□□□□ -0.2
CLN3-264ENST00000637985 ZNF154Q13106 437 aa13.81□□□□□ -0.2
CLN3-264ENST00000637985 ALKBH6Q3KRA9 238 aa13.81□□□□□ -0.2
CLN3-264ENST00000637985 HSP90B2PQ58FF3 399 aa13.81□□□□□ -0.2
CLN3-264ENST00000637985 NANOGNBQ7Z5D8 188 aa13.81□□□□□ -0.2
CLN3-264ENST00000637985 RAB1CQ92928 201 aa13.81□□□□□ -0.2
CLN3-264ENST00000637985 ZNF566Q969W8 418 aa13.81□□□□□ -0.2
CLN3-264ENST00000637985 TIMD4Q96H15 378 aa13.81□□□□□ -0.2
CLN3-264ENST00000637985 MEPEQ9NQ76 525 aaPredicted RBP13.81□□□□□ -0.2
CLN3-264ENST00000637985 HINT3Q9NQE9 182 aaKnown RBP13.81□□□□□ -0.2
CLN3-264ENST00000637985 RIMS3Q9UJD0 308 aa13.81□□□□□ -0.2
CLN3-264ENST00000637985 CACNG2Q9Y698 323 aa13.81□□□□□ -0.2
CLN3-264ENST00000637985 FOXH1O75593 365 aa13.8□□□□□ -0.2
CLN3-264ENST00000637985 MTNR1AP48039 350 aa13.8□□□□□ -0.2
CLN3-264ENST00000637985 RAG2P55895 527 aa13.8□□□□□ -0.2
CLN3-264ENST00000637985 GALK2Q01415 458 aa13.8□□□□□ -0.2
CLN3-264ENST00000637985 PIGFQ07326 219 aa13.8□□□□□ -0.2
CLN3-264ENST00000637985 SF3A3Q12874 501 aaKnown RBP eCLIP13.8□□□□□ -0.2
CLN3-264ENST00000637985 NKPD1Q17RQ9 610 aa13.8□□□□□ -0.2
CLN3-264ENST00000637985 BEAN1Q3B7T3 259 aa13.8□□□□□ -0.2
CLN3-264ENST00000637985 C9orf139Q6ZV77 190 aa13.8□□□□□ -0.2
CLN3-264ENST00000637985 OR2T12Q8NG77 320 aa13.8□□□□□ -0.2
CLN3-264ENST00000637985 RP9Q8TA86 221 aaKnown RBP13.8□□□□□ -0.2
CLN3-264ENST00000637985 TMEM239Q8WW34 195 aa13.8□□□□□ -0.2
CLN3-264ENST00000637985 GAL3ST1Q99999 423 aa13.8□□□□□ -0.2
CLN3-264ENST00000637985 MS4A7Q9GZW8 240 aaPredicted RBP13.8□□□□□ -0.2
CLN3-264ENST00000637985 ZNF224Q9NZL3 707 aa13.8□□□□□ -0.2
CLN3-264ENST00000637985 TAAR3PQ9P1P4 343 aa13.8□□□□□ -0.2
CLN3-264ENST00000637985 A0A1W2PRG6 482 aa13.79□□□□□ -0.2
CLN3-264ENST00000637985 ELOVL7A1L3X0 281 aa13.79□□□□□ -0.2
CLN3-264ENST00000637985 CLPSL1A2RUU4 121 aa13.79□□□□□ -0.2
CLN3-264ENST00000637985 FAM181BA6NEQ2 426 aa13.79□□□□□ -0.2
CLN3-264ENST00000637985 CENPBD1B2RD01 187 aa13.79□□□□□ -0.2
CLN3-264ENST00000637985 BLOC1S5-TXNDC5H3BN57 136 aa13.79□□□□□ -0.2
CLN3-264ENST00000637985 OR7A10O76100 309 aa13.79□□□□□ -0.2
CLN3-264ENST00000637985 RAB36O95755 333 aa13.79□□□□□ -0.2
CLN3-264ENST00000637985 TSPAN15O95858 294 aa13.79□□□□□ -0.2
CLN3-264ENST00000637985 NGFP01138 241 aa13.79□□□□□ -0.2
CLN3-264ENST00000637985 PGA4P0DJD7 388 aa13.79□□□□□ -0.2
CLN3-264ENST00000637985 PGA3P0DJD8 388 aa13.79□□□□□ -0.2
CLN3-264ENST00000637985 FUT1P19526 365 aa13.79□□□□□ -0.2
CLN3-264ENST00000637985 TNFRSF1BP20333 461 aa13.79□□□□□ -0.2
CLN3-264ENST00000637985 PTDSS1P48651 473 aaKnown RBP13.79□□□□□ -0.2
CLN3-264ENST00000637985 RAB1AP62820 205 aa13.79□□□□□ -0.2
CLN3-264ENST00000637985 SELENOWP63302 87 aa13.79□□□□□ -0.2
CLN3-264ENST00000637985 RELBQ01201 579 aa13.79□□□□□ -0.2
CLN3-264ENST00000637985 PIN1Q13526 163 aaPredicted RBP13.79□□□□□ -0.2
CLN3-264ENST00000637985 HFEQ30201 348 aa13.79□□□□□ -0.2
CLN3-264ENST00000637985 LRRC23Q53EV4 343 aaPredicted RBP13.79□□□□□ -0.2
CLN3-264ENST00000637985 CYBRD1Q53TN4 286 aa13.79□□□□□ -0.2
CLN3-264ENST00000637985 TMEM154Q6P9G4 183 aa13.79□□□□□ -0.2
CLN3-264ENST00000637985 LRFN4Q6PJG9 635 aa13.79□□□□□ -0.2
CLN3-264ENST00000637985 USP51Q70EK9 711 aa13.79□□□□□ -0.2
CLN3-264ENST00000637985 HDDC2Q7Z4H3 204 aa13.79□□□□□ -0.2
CLN3-264ENST00000637985 ARPINQ7Z6K5 226 aa13.79□□□□□ -0.2
CLN3-264ENST00000637985 NKAIN4Q8IVV8 208 aa13.79□□□□□ -0.2
CLN3-264ENST00000637985 MICU2Q8IYU8 434 aa13.79□□□□□ -0.2
CLN3-264ENST00000637985 TMEM255BQ8WV15 326 aa13.79□□□□□ -0.2
CLN3-264ENST00000637985 LIPHQ8WWY8 451 aa13.79□□□□□ -0.2
CLN3-264ENST00000637985 SGTBQ96EQ0 304 aa13.79□□□□□ -0.2
CLN3-264ENST00000637985 MED4Q9NPJ6 270 aa13.79□□□□□ -0.2
CLN3-264ENST00000637985 GPR160Q9UJ42 338 aa13.79□□□□□ -0.2
CLN3-264ENST00000637985 POLR3KQ9Y2Y1 108 aaPredicted RBP13.79□□□□□ -0.2
CLN3-264ENST00000637985 SOX21Q9Y651 276 aaPredicted RBP13.79□□□□□ -0.2
CLN3-264ENST00000637985 HTR3EA5X5Y0 456 aa13.78□□□□□ -0.2
CLN3-264ENST00000637985 TRAPPC2LH3BP13 241 aa13.78□□□□□ -0.2
CLN3-264ENST00000637985 DHHO43323 396 aa13.78□□□□□ -0.2
CLN3-264ENST00000637985 NDUFA7O95182 113 aa13.78□□□□□ -0.2
CLN3-264ENST00000637985 FARS2O95363 451 aaKnown RBP13.78□□□□□ -0.2
CLN3-264ENST00000637985 GPANK1O95872 356 aa13.78□□□□□ -0.2
CLN3-264ENST00000637985 CLPTM1O96005 669 aa13.78□□□□□ -0.2
CLN3-264ENST00000637985 IGHG1P01857 330 aa13.78□□□□□ -0.2
CLN3-264ENST00000637985 OR8G3PP0DMU2 310 aa13.78□□□□□ -0.2
CLN3-264ENST00000637985 SELEP16581 610 aa13.78□□□□□ -0.2
CLN3-264ENST00000637985 ZNF12P17014 697 aa13.78□□□□□ -0.2
CLN3-264ENST00000637985 IFNA8P32881 189 aa13.78□□□□□ -0.2
CLN3-264ENST00000637985 OR1E2P47887 323 aa13.78□□□□□ -0.2
CLN3-264ENST00000637985 GIPRP48546 466 aa13.78□□□□□ -0.2
CLN3-264ENST00000637985 UGT2B15P54855 530 aa13.78□□□□□ -0.2
CLN3-264ENST00000637985 RPL18Q07020 188 aaKnown RBP13.78□□□□□ -0.2
CLN3-264ENST00000637985 ST3GAL3Q11203 375 aa13.78□□□□□ -0.2
CLN3-264ENST00000637985 MELKQ14680 651 aa13.78□□□□□ -0.2
CLN3-264ENST00000637985 TAF9Q16594 264 aa13.78□□□□□ -0.2
CLN3-264ENST00000637985 HIST3H3Q16695 136 aa13.78□□□□□ -0.2
CLN3-264ENST00000637985 NRN1LQ496H8 165 aa13.78□□□□□ -0.2
CLN3-264ENST00000637985 KPRPQ5T749 579 aaPredicted RBP13.78□□□□□ -0.2
CLN3-264ENST00000637985 ZNF771Q7L3S4 317 aaPredicted RBP13.78□□□□□ -0.2
CLN3-264ENST00000637985 DPPA2Q7Z7J5 298 aa13.78□□□□□ -0.2
CLN3-264ENST00000637985 SKA3Q8IX90 412 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms