RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 Q6ZN92 141 aa5.26□□□□□ -1.57
SCN1A-216ENST00000637968 C1orf122Q6ZSJ8 110 aa5.26□□□□□ -1.57
SCN1A-216ENST00000637968 CMTM4Q8IZR5 234 aa5.26□□□□□ -1.57
SCN1A-216ENST00000637968 MMP21Q8N119 569 aa5.26□□□□□ -1.57
SCN1A-216ENST00000637968 CELF5Q8N6W0 485 aaKnown RBP5.26□□□□□ -1.57
SCN1A-216ENST00000637968 ZNF709Q8N972 641 aa5.26□□□□□ -1.57
SCN1A-216ENST00000637968 OR14C36Q8NHC7 312 aa5.26□□□□□ -1.57
SCN1A-216ENST00000637968 TMEM234Q8WY98 164 aa5.26□□□□□ -1.57
SCN1A-216ENST00000637968 WNT8BQ93098 351 aa5.26□□□□□ -1.57
SCN1A-216ENST00000637968 MAL2Q969L2 176 aa5.26□□□□□ -1.57
SCN1A-216ENST00000637968 SEMA6CQ9H3T2 930 aa5.26□□□□□ -1.57
SCN1A-216ENST00000637968 AGO4Q9HCK5 861 aaKnown RBP5.26□□□□□ -1.57
SCN1A-216ENST00000637968 PPT2Q9UMR5 302 aa5.26□□□□□ -1.57
SCN1A-216ENST00000637968 IGLV3-22A0A075B6J6 115 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 SERTM1A2A2V5 107 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 FAM183AA6NL82 134 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 YJEFN3A6XGL0 299 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 G3V3Q6 166 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 J3KTA2 159 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 J3QW42 95 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 K7EP13 123 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 TSPAN2O60636 221 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 TRAPPC6AO75865 159 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 JTBO76095 146 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 CD74P04233 296 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 OR10J4P0C629 311 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 LSSP48449 732 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 SLC37A1P57057 533 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 BDH1Q02338 343 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 OR4A47Q6IF82 309 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 CTU1Q7Z7A3 348 aaKnown RBP5.25□□□□□ -1.57
SCN1A-216ENST00000637968 LRP11Q86VZ4 500 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 CPOQ8IVL8 374 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 AMER3Q8N944 861 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 TSTD1Q8NFU3 115 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 CD200R1Q8TD46 325 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 GRHL3Q8TE85 626 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 RGP1Q92546 391 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-216ENST00000637968 RASD2Q96D21 266 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 MVB12AQ96EY5 273 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 DEFB118Q96PH6 123 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 OR5B2Q96R09 309 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 EBPLQ9BY08 206 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 CHODLQ9H9P2 273 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 PAM16Q9Y3D7 125 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 ARRDC5A6NEK1 342 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 IDSB3KWA1 339 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 H7BY64 318 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 RAB27BO00194 218 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 FCMRO60667 390 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 LRG1P02750 347 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 CD14P08571 375 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 PGA4P0DJD7 388 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 PGA5P0DJD9 388 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 NID1P14543 1247 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 GPX2P18283 190 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 EDNRAP25101 427 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 IMPA1P29218 277 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 GCH1P30793 250 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 PYCR1P32322 319 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 PNPLA4P41247 253 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 TUSC3Q13454 348 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 SLC25A35Q3KQZ1 300 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 ELOA3BQ3SY89 546 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 OCIAD2Q56VL3 154 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 ZNF322Q6U7Q0 402 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-216ENST00000637968 GRASPQ7Z6J2 395 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-216ENST00000637968 NPAS4Q8IUM7 802 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 ELOA3Q8NG57 546 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 OR6N1Q8NGY5 312 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 NUDT8Q8WV74 236 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 MITD1Q8WV92 249 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 ALKBH3Q96Q83 286 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-216ENST00000637968 STACQ99469 402 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 CNTD2Q9H8S5 307 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 TMEM9BQ9NQ34 198 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 PXMP2Q9NR77 195 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 PLSCR2Q9NRY7 297 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 STRAPQ9Y3F4 350 aaKnown RBP5.25□□□□□ -1.57
SCN1A-216ENST00000637968 SPACA6W5XKT8 324 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 RREB1Q92766 1687 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 IGHA2P01877 340 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 SELEP16581 610 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 GLRA1P23415 457 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 TNFSF4P23510 183 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 PSEN2P49810 448 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 CLDN12P56749 244 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 MORN1Q5T089 497 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 FAM219BQ5XKK7 198 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 CD200R1LQ6Q8B3 271 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 DEFB128Q7Z7B8 93 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 MSRB3Q8IXL7 192 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 FBXO22Q8NEZ5 403 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 APH1AQ96BI3 265 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 G6PC3Q9BUM1 346 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 MEGF9Q9H1U4 602 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 PATZ1Q9HBE1 687 aaKnown RBP5.25□□□□□ -1.57
SCN1A-216ENST00000637968 ACER3Q9NUN7 267 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 MRPS33Q9Y291 106 aaKnown RBP5.25□□□□□ -1.57
SCN1A-216ENST00000637968 ZNF281Q9Y2X9 895 aa5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms