RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 NAT6Q93015 286 aa9.52□□□□□ -0.89
CUX1-221ENST00000622516 DACT3Q96B18 629 aaPredicted RBP9.52□□□□□ -0.89
CUX1-221ENST00000622516 DCBLD2Q96PD2 775 aa9.52□□□□□ -0.89
CUX1-221ENST00000622516 EMC9Q9Y3B6 208 aa9.52□□□□□ -0.89
CUX1-221ENST00000622516 LRP12Q9Y561 859 aa9.52□□□□□ -0.89
CUX1-221ENST00000622516 PMS2P1A4D2B8 440 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 D6RAR5 112 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 LMX1BO60663 402 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 TDGF1P13385 188 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 GDNFP39905 211 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 MMP15P51511 669 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 EFNB2P52799 333 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 HSF1Q00613 529 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 CAMK2DQ13557 499 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 LYPD8Q6UX82 237 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 NDUFAF7Q7L592 441 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 LRRTM1Q86UE6 522 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 C1orf210Q8IVY1 113 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 ZNF679Q8IYX0 411 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 LILRB4Q8NHJ6 448 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 HAVCR2Q8TDQ0 301 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 GPR148Q8TDV2 347 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 JSRP1Q96MG2 331 aaPredicted RBP9.51□□□□□ -0.89
CUX1-221ENST00000622516 OR5B2Q96R09 309 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 SLITRK2Q9H156 845 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 VSX1Q9NZR4 365 aaPredicted RBP9.51□□□□□ -0.89
CUX1-221ENST00000622516 RCE1Q9Y256 329 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 ZFHX4Q86UP3 3567 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 ARPC4-TTLL3A0A0A6YYG9 625 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 C19orf67A6NJJ6 358 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 PDCD5O14737 125 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 GMDSO60547 372 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 CD1AP06126 327 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 CDK2P24941 298 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 APOBEC1P41238 236 aaKnown RBP9.51□□□□□ -0.89
CUX1-221ENST00000622516 SNTB2Q13425 540 aaKnown RBP9.51□□□□□ -0.89
CUX1-221ENST00000622516 PLPPR5Q32ZL2 321 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 ASPHD2Q6ICH7 369 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 TMEM205Q6UW68 189 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 RFPL4BQ6ZWI9 263 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 WDR5BQ86VZ2 330 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 OR51D1Q8NGF3 324 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 ASB10Q8WXI3 467 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 ST8SIA1Q92185 356 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 MS4A3Q96HJ5 214 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 GNRHR2Q96P88 292 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 CACNG6Q9BXT2 260 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 ATPIF1Q9UII2 106 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 FLVCR2Q9UPI3 526 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 CAMK2AQ9UQM7 478 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 WIF1Q9Y5W5 379 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 EP300Q09472 2414 aaPredicted RBP9.51□□□□□ -0.89
CUX1-221ENST00000622516 TRBV5-5A0A0J9YX44 114 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 MEIS3P1A6NDR6 274 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 UMODP07911 640 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 CDAP32320 146 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 RPS18P62269 152 aaKnown RBP9.51□□□□□ -0.89
CUX1-221ENST00000622516 MRPL28Q13084 256 aaKnown RBP9.51□□□□□ -0.89
CUX1-221ENST00000622516 MFAP5Q13361 173 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 Q5BKY6 102 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 TMEM69Q5SWH9 247 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 MISPQ8IVT2 679 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 DND1Q8IYX4 353 aaKnown RBP9.51□□□□□ -0.89
CUX1-221ENST00000622516 WDSUB1Q8N9V3 476 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 DDIT4LQ96D03 193 aa9.51□□□□□ -0.89
CUX1-221ENST00000622516 CCDC163A0A0D9SF12 145 aa9.5□□□□□ -0.89
CUX1-221ENST00000622516 LIPT2A6NK58 231 aa9.5□□□□□ -0.89
CUX1-221ENST00000622516 TMEM212A6NML5 194 aa9.5□□□□□ -0.89
CUX1-221ENST00000622516 TCRBP04435 133 aa9.5□□□□□ -0.89
CUX1-221ENST00000622516 KLK3P07288 261 aaPredicted RBP9.5□□□□□ -0.89
CUX1-221ENST00000622516 ITGA5P08648 1049 aa9.5□□□□□ -0.89
CUX1-221ENST00000622516 ZNF823P16415 610 aa9.5□□□□□ -0.89
CUX1-221ENST00000622516 SNRPD2P62316 118 aaKnown RBP9.5□□□□□ -0.89
CUX1-221ENST00000622516 TAGLNQ01995 201 aaKnown RBP9.5□□□□□ -0.89
CUX1-221ENST00000622516 TMEM176BQ3YBM2 270 aaPredicted RBP9.5□□□□□ -0.89
CUX1-221ENST00000622516 NOXA1Q86UR1 476 aa9.5□□□□□ -0.89
CUX1-221ENST00000622516 MFSD8Q8NHS3 518 aa9.5□□□□□ -0.89
CUX1-221ENST00000622516 ADAMTS14Q8WXS8 1223 aa9.5□□□□□ -0.89
CUX1-221ENST00000622516 PHF21AQ96BD5 680 aa9.5□□□□□ -0.89
CUX1-221ENST00000622516 SPACA9Q96E40 222 aaPredicted RBP9.5□□□□□ -0.89
CUX1-221ENST00000622516 S100A16Q96FQ6 103 aaKnown RBP9.5□□□□□ -0.89
CUX1-221ENST00000622516 MED30Q96HR3 178 aa9.5□□□□□ -0.89
CUX1-221ENST00000622516 SEC61A2Q9H9S3 476 aa9.5□□□□□ -0.89
CUX1-221ENST00000622516 CHST11Q9NPF2 352 aa9.5□□□□□ -0.89
CUX1-221ENST00000622516 SERINC1Q9NRX5 453 aa9.5□□□□□ -0.89
CUX1-221ENST00000622516 GPN3Q9UHW5 284 aaPredicted RBP9.5□□□□□ -0.89
CUX1-221ENST00000622516 PPIEQ9UNP9 301 aaKnown RBP9.5□□□□□ -0.89
CUX1-221ENST00000622516 HLA-DMAP28067 261 aa9.5□□□□□ -0.89
CUX1-221ENST00000622516 PTH2RP49190 550 aa9.5□□□□□ -0.89
CUX1-221ENST00000622516 ZXDAP98168 799 aa9.5□□□□□ -0.89
CUX1-221ENST00000622516 PITPNAQ00169 270 aa9.5□□□□□ -0.89
CUX1-221ENST00000622516 PCOLCEQ15113 449 aa9.5□□□□□ -0.89
CUX1-221ENST00000622516 STK11Q15831 433 aa9.5□□□□□ -0.89
CUX1-221ENST00000622516 FAM205BPQ63HN1 556 aa9.5□□□□□ -0.89
CUX1-221ENST00000622516 OR51A2Q8NGJ7 313 aa9.5□□□□□ -0.89
CUX1-221ENST00000622516 CREB3L1Q96BA8 519 aa9.5□□□□□ -0.89
CUX1-221ENST00000622516 B3GAT1Q9P2W7 334 aa9.5□□□□□ -0.89
CUX1-221ENST00000622516 DCDC2BA2VCK2 349 aa9.49□□□□□ -0.89
CUX1-221ENST00000622516 KLF7O75840 302 aaPredicted RBP9.49□□□□□ -0.89
CUX1-221ENST00000622516 F10P00742 488 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms