RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 OR51B4Q9Y5P0 310 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 KCNE3Q9Y6H6 103 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 ARPC4-TTLL3A0A0A6YYG9 625 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 A0A1W2PPV4 95 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 OR2W5A6NFC9 320 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 E9PI62 339 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 ZNF728P0DKX0 622 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 PPICP45877 212 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 TSLPQ969D9 159 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 RBMXL1Q96E39 390 aaKnown RBP12.8□□□□□ -0.36
CPSF1-212ENST00000616140 WWTR1Q9GZV5 400 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 TAS2R4Q9NYW5 299 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 ASH2LQ9UBL3 628 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 IDSB3KWA1 339 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 ZNF780AO75290 641 aaPredicted RBP12.8□□□□□ -0.36
CPSF1-212ENST00000616140 ALX3O95076 343 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 SERPINA7P05543 415 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 LPLP06858 475 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 AADACL3Q5VUY0 350 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 OGFOD3Q6PK18 319 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 PGAP1Q75T13 922 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 GRAMD2AQ8IUY3 354 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 ZNF683Q8IZ20 524 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 CMTM4Q8IZR5 234 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 SPACA5Q96QH8 159 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 MMP17Q9ULZ9 603 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 BCORQ6W2J9 1755 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 SPTBN2O15020 2390 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 IGLV3-16A0A075B6K0 115 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 TMEM221A6NGB7 291 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 EIF4EP06730 217 aaKnown RBP12.8□□□□□ -0.36
CPSF1-212ENST00000616140 CD53P19397 219 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 MRPS34P82930 218 aaKnown RBP12.8□□□□□ -0.36
CPSF1-212ENST00000616140 RABEPKQ7Z6M1 372 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 ELSPBP1Q96BH3 223 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 NEURL2Q9BR09 285 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 RBM38Q9H0Z9 239 aaKnown RBP12.8□□□□□ -0.36
CPSF1-212ENST00000616140 ZNF576Q9H609 170 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 GPATCH2Q9NW75 528 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 TRAPPC2LQ9UL33 140 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 TGM6O95932 706 aa12.79□□□□□ -0.36
CPSF1-212ENST00000616140 ARL3P36405 182 aa12.79□□□□□ -0.36
CPSF1-212ENST00000616140 BDH1Q02338 343 aa12.79□□□□□ -0.36
CPSF1-212ENST00000616140 MLF2Q15773 248 aaPredicted RBP12.79□□□□□ -0.36
CPSF1-212ENST00000616140 TMEM196Q5HYL7 178 aa12.79□□□□□ -0.36
CPSF1-212ENST00000616140 KIRREL2Q6UWL6 708 aa12.79□□□□□ -0.36
CPSF1-212ENST00000616140 HAS2Q92819 552 aa12.79□□□□□ -0.36
CPSF1-212ENST00000616140 DERL3Q96Q80 235 aa12.79□□□□□ -0.36
CPSF1-212ENST00000616140 NXT1Q9UKK6 140 aaKnown RBP12.79□□□□□ -0.36
CPSF1-212ENST00000616140 A4GNTQ9UNA3 340 aa12.79□□□□□ -0.36
CPSF1-212ENST00000616140 FLVCR2Q9UPI3 526 aa12.79□□□□□ -0.36
CPSF1-212ENST00000616140 NOSIPQ9Y314 301 aaKnown RBP12.79□□□□□ -0.36
CPSF1-212ENST00000616140 OR6C6A6NF89 314 aa12.79□□□□□ -0.36
CPSF1-212ENST00000616140 ACHEP22303 614 aa12.79□□□□□ -0.36
CPSF1-212ENST00000616140 CARD18P57730 90 aa12.79□□□□□ -0.36
CPSF1-212ENST00000616140 PHLDA2Q53GA4 152 aa12.79□□□□□ -0.36
CPSF1-212ENST00000616140 OR10K2Q6IF99 312 aa12.79□□□□□ -0.36
CPSF1-212ENST00000616140 BPHLQ86WA6 291 aaPredicted RBP12.79□□□□□ -0.36
CPSF1-212ENST00000616140 RPS19BP1Q86WX3 136 aaKnown RBP12.79□□□□□ -0.36
CPSF1-212ENST00000616140 ST7LQ8TDW4 575 aa12.79□□□□□ -0.36
CPSF1-212ENST00000616140 LIPHQ8WWY8 451 aa12.79□□□□□ -0.36
CPSF1-212ENST00000616140 PADI1Q9ULC6 663 aa12.79□□□□□ -0.36
CPSF1-212ENST00000616140 A0A087WV62 115 aa12.79□□□□□ -0.36
CPSF1-212ENST00000616140 STMND1H3BQB6 276 aa12.79□□□□□ -0.36
CPSF1-212ENST00000616140 MSL3P1P0C860 447 aa12.79□□□□□ -0.36
CPSF1-212ENST00000616140 HSF1Q00613 529 aa12.79□□□□□ -0.36
CPSF1-212ENST00000616140 LTC4SQ16873 150 aa12.79□□□□□ -0.36
CPSF1-212ENST00000616140 ECM29Q5VYK3 1845 aa12.79□□□□□ -0.36
CPSF1-212ENST00000616140 OR5M1Q8NGP8 315 aa12.79□□□□□ -0.36
CPSF1-212ENST00000616140 POFUT1Q9H488 388 aa12.79□□□□□ -0.36
CPSF1-212ENST00000616140 CALHM2Q9HA72 323 aa12.79□□□□□ -0.36
CPSF1-212ENST00000616140 SLC22A13Q9Y226 551 aa12.79□□□□□ -0.36
CPSF1-212ENST00000616140 PHF1O43189 567 aaPredicted RBP12.78□□□□□ -0.36
CPSF1-212ENST00000616140 CER1O95813 267 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 MSR1P21757 451 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 SELENBP1Q13228 472 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 MSMO1Q15800 293 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 SOHLH1Q5JUK2 328 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 GLCCI1Q86VQ1 547 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 WDR5BQ86VZ2 330 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 SUMF1Q8NBK3 374 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 STT3BQ8TCJ2 826 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 PBX4Q9BYU1 374 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 ZNF223Q9UK11 482 aaPredicted RBP12.78□□□□□ -0.36
CPSF1-212ENST00000616140 GIPP09681 153 aaPredicted RBP12.78□□□□□ -0.36
CPSF1-212ENST00000616140 SHHQ15465 462 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 AGBL4Q5VU57 503 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 LINC00696Q6ZRV3 163 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 CA13Q8N1Q1 262 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 PLPP5Q8NEB5 264 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 SCARB1Q8WTV0 552 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 A0A0A6YYJ9 748 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 TEX51A0A1B0GUA7 166 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 AKR7A2O43488 359 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 SOD1P00441 154 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 SFRP5Q5T4F7 317 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 TMUB2Q71RG4 321 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 GOT1L1Q8NHS2 421 aaPredicted RBP12.78□□□□□ -0.36
CPSF1-212ENST00000616140 OCSTAMPQ9BR26 566 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 MED29Q9NX70 200 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms