RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.61□□□□□ -0.39
USP39-220ENST00000613444 SNX33Q8WV41 574 aa12.61□□□□□ -0.39
USP39-220ENST00000613444 SARAFQ96BY9 339 aa12.61□□□□□ -0.39
USP39-220ENST00000613444 BCL7BQ9BQE9 202 aa12.61□□□□□ -0.39
USP39-220ENST00000613444 CLCF1Q9UBD9 225 aa12.61□□□□□ -0.39
USP39-220ENST00000613444 ZNF175Q9Y473 711 aa12.61□□□□□ -0.39
USP39-220ENST00000613444 TMEM14AQ9Y6G1 99 aa12.61□□□□□ -0.39
USP39-220ENST00000613444 PNMA8CA0A1B0GUJ8 204 aa12.6□□□□□ -0.39
USP39-220ENST00000613444 PSMD9O00233 223 aa12.6□□□□□ -0.39
USP39-220ENST00000613444 SLC43A1O75387 559 aa12.6□□□□□ -0.39
USP39-220ENST00000613444 WNT11O96014 354 aa12.6□□□□□ -0.39
USP39-220ENST00000613444 CRYABP02511 175 aaKnown RBP12.6□□□□□ -0.39
USP39-220ENST00000613444 SPARCP09486 303 aa12.6□□□□□ -0.39
USP39-220ENST00000613444 CRYBB2P43320 205 aa12.6□□□□□ -0.39
USP39-220ENST00000613444 SOWAHCQ53LP3 525 aaPredicted RBP12.6□□□□□ -0.39
USP39-220ENST00000613444 ST7LQ8TDW4 575 aa12.6□□□□□ -0.39
USP39-220ENST00000613444 HTRA1Q92743 480 aa12.6□□□□□ -0.39
USP39-220ENST00000613444 UFD1Q92890 307 aa12.6□□□□□ -0.39
USP39-220ENST00000613444 PRRG4Q9BZD6 226 aa12.6□□□□□ -0.39
USP39-220ENST00000613444 ACOXLQ9NUZ1 547 aa12.6□□□□□ -0.39
USP39-220ENST00000613444 ST6GALNAC2Q9UJ37 374 aa12.6□□□□□ -0.39
USP39-220ENST00000613444 CLEC4AQ9UMR7 237 aa12.6□□□□□ -0.39
USP39-220ENST00000613444 A0A1W2PPL8 197 aa12.6□□□□□ -0.39
USP39-220ENST00000613444 OR14I1A6ND48 311 aa12.6□□□□□ -0.39
USP39-220ENST00000613444 SLC22A20A6NK97 555 aa12.6□□□□□ -0.39
USP39-220ENST00000613444 DHHO43323 396 aa12.6□□□□□ -0.39
USP39-220ENST00000613444 GPX5O75715 221 aa12.6□□□□□ -0.39
USP39-220ENST00000613444 HOXD11P31277 338 aaPredicted RBP12.6□□□□□ -0.39
USP39-220ENST00000613444 EGR3Q06889 387 aa12.6□□□□□ -0.39
USP39-220ENST00000613444 RPTNQ6XPR3 784 aa12.6□□□□□ -0.39
USP39-220ENST00000613444 EGFL6Q8IUX8 553 aa12.6□□□□□ -0.39
USP39-220ENST00000613444 THEM6Q8WUY1 208 aa12.6□□□□□ -0.39
USP39-220ENST00000613444 NABP1Q96AH0 204 aa12.6□□□□□ -0.39
USP39-220ENST00000613444 TRMT61AQ96FX7 289 aaKnown RBP12.6□□□□□ -0.39
USP39-220ENST00000613444 GPR137Q96N19 417 aa12.6□□□□□ -0.39
USP39-220ENST00000613444 ABHD6Q9BV23 337 aa12.6□□□□□ -0.39
USP39-220ENST00000613444 TRIM36Q9NQ86 728 aa12.6□□□□□ -0.39
USP39-220ENST00000613444 POLE4Q9NR33 117 aa12.6□□□□□ -0.39
USP39-220ENST00000613444 EMC3Q9P0I2 261 aa12.6□□□□□ -0.39
USP39-220ENST00000613444 CYB5R1Q9UHQ9 305 aa12.6□□□□□ -0.39
USP39-220ENST00000613444 TUBD1Q9UJT1 453 aa12.6□□□□□ -0.39
USP39-220ENST00000613444 GNG8Q9UK08 70 aa12.6□□□□□ -0.39
USP39-220ENST00000613444 NOSIPQ9Y314 301 aaKnown RBP12.6□□□□□ -0.39
USP39-220ENST00000613444 GRIP1Q9Y3R0 1128 aa12.6□□□□□ -0.39
USP39-220ENST00000613444 PHYHO14832 338 aa12.59□□□□□ -0.39
USP39-220ENST00000613444 AIREO43918 545 aa12.59□□□□□ -0.39
USP39-220ENST00000613444 SULT1C4O75897 302 aa12.59□□□□□ -0.39
USP39-220ENST00000613444 YES1P07947 543 aa12.59□□□□□ -0.39
USP39-220ENST00000613444 OR8G3PP0DMU2 310 aa12.59□□□□□ -0.39
USP39-220ENST00000613444 ZNF823P16415 610 aa12.59□□□□□ -0.39
USP39-220ENST00000613444 CELP19835 753 aa12.59□□□□□ -0.39
USP39-220ENST00000613444 TGFBR1P36897 503 aa12.59□□□□□ -0.39
USP39-220ENST00000613444 CAPZA2P47755 286 aa12.59□□□□□ -0.39
USP39-220ENST00000613444 NCS1P62166 190 aa12.59□□□□□ -0.39
USP39-220ENST00000613444 LSM3P62310 102 aaKnown RBP12.59□□□□□ -0.39
USP39-220ENST00000613444 ROM1Q03395 351 aa12.59□□□□□ -0.39
USP39-220ENST00000613444 GPR50Q13585 617 aa12.59□□□□□ -0.39
USP39-220ENST00000613444 SPCS2Q15005 226 aa12.59□□□□□ -0.39
USP39-220ENST00000613444 RIPPLY2Q5TAB7 128 aa12.59□□□□□ -0.39
USP39-220ENST00000613444 SLC18B1Q6NT16 456 aa12.59□□□□□ -0.39
USP39-220ENST00000613444 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.59□□□□□ -0.39
USP39-220ENST00000613444 ZNF454Q8N9F8 522 aa12.59□□□□□ -0.39
USP39-220ENST00000613444 RPS4Y2Q8TD47 263 aa12.59□□□□□ -0.39
USP39-220ENST00000613444 OR8B4Q96RC9 309 aa12.59□□□□□ -0.39
USP39-220ENST00000613444 ULBP2Q9BZM5 246 aa12.59□□□□□ -0.39
USP39-220ENST00000613444 SEC61A2Q9H9S3 476 aa12.59□□□□□ -0.39
USP39-220ENST00000613444 EMC7Q9NPA0 242 aa12.59□□□□□ -0.39
USP39-220ENST00000613444 SLCO1C1Q9NYB5 712 aa12.59□□□□□ -0.39
USP39-220ENST00000613444 LHFPL6Q9Y693 200 aa12.59□□□□□ -0.39
USP39-220ENST00000613444 OGG1O15527 345 aa12.59□□□□□ -0.39
USP39-220ENST00000613444 PLPP2O43688 288 aa12.59□□□□□ -0.39
USP39-220ENST00000613444 VBP1P61758 197 aa12.59□□□□□ -0.39
USP39-220ENST00000613444 RPS25P62851 125 aaKnown RBP12.59□□□□□ -0.39
USP39-220ENST00000613444 DMKNQ6E0U4 476 aaPredicted RBP12.59□□□□□ -0.39
USP39-220ENST00000613444 CD200R1LQ6Q8B3 271 aa12.59□□□□□ -0.39
USP39-220ENST00000613444 PLEKHG7Q6ZR37 379 aa12.59□□□□□ -0.39
USP39-220ENST00000613444 KCTD20Q7Z5Y7 419 aa12.59□□□□□ -0.39
USP39-220ENST00000613444 LINC00346Q8IVM7 164 aa12.59□□□□□ -0.39
USP39-220ENST00000613444 OR5M9Q8NGP3 310 aa12.59□□□□□ -0.39
USP39-220ENST00000613444 MRPL48Q96GC5 212 aaKnown RBP12.59□□□□□ -0.39
USP39-220ENST00000613444 ALKBH3Q96Q83 286 aaPredicted RBP12.59□□□□□ -0.39
USP39-220ENST00000613444 CENPOQ9BU64 300 aa12.59□□□□□ -0.39
USP39-220ENST00000613444 CALHM2Q9HA72 323 aa12.59□□□□□ -0.39
USP39-220ENST00000613444 GP6Q9HCN6 339 aa12.59□□□□□ -0.39
USP39-220ENST00000613444 ZGRF1Q86YA3 2104 aa12.58□□□□□ -0.39
USP39-220ENST00000613444 RTTNQ86VV8 2226 aa12.58□□□□□ -0.4
USP39-220ENST00000613444 A0A1W2PPW3 197 aa12.58□□□□□ -0.4
USP39-220ENST00000613444 METTL15A6NJ78 407 aa12.58□□□□□ -0.4
USP39-220ENST00000613444 MRPL33O75394 65 aaKnown RBP12.58□□□□□ -0.4
USP39-220ENST00000613444 GABRA5P31644 462 aa12.58□□□□□ -0.4
USP39-220ENST00000613444 SIRPAP78324 504 aa12.58□□□□□ -0.4
USP39-220ENST00000613444 EIF2B1Q14232 305 aaKnown RBP12.58□□□□□ -0.4
USP39-220ENST00000613444 TSPO2Q5TGU0 170 aa12.58□□□□□ -0.4
USP39-220ENST00000613444 LIPNQ5VXI9 398 aa12.58□□□□□ -0.4
USP39-220ENST00000613444 CORO6Q6QEF8 472 aa12.58□□□□□ -0.4
USP39-220ENST00000613444 NUFIP2Q7Z417 695 aaKnown RBP12.58□□□□□ -0.4
USP39-220ENST00000613444 DCXRQ7Z4W1 244 aa12.58□□□□□ -0.4
USP39-220ENST00000613444 OR52N5Q8NH56 324 aa12.58□□□□□ -0.4
USP39-220ENST00000613444 ASB17Q8WXJ9 295 aa12.58□□□□□ -0.4
USP39-220ENST00000613444 MAP6Q96JE9 813 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms