RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 DNM1P34Q6PK57 102 aa14.38□□□□□ -0.11
CCDC28A-202ENST00000611852 SLC22A25Q6T423 547 aa14.38□□□□□ -0.11
CCDC28A-202ENST00000611852 GLB1L2Q8IW92 636 aa14.38□□□□□ -0.11
CCDC28A-202ENST00000611852 CYB561A3Q8NBI2 242 aa14.38□□□□□ -0.11
CCDC28A-202ENST00000611852 ICA1LQ8NDH6 482 aa14.38□□□□□ -0.11
CCDC28A-202ENST00000611852 AKAP1Q92667 903 aaKnown RBP eCLIP14.38□□□□□ -0.11
CCDC28A-202ENST00000611852 NEUROG1Q92886 237 aa14.38□□□□□ -0.11
CCDC28A-202ENST00000611852 FBXO17Q96EF6 278 aa14.38□□□□□ -0.11
CCDC28A-202ENST00000611852 FOXN4Q96NZ1 517 aa14.38□□□□□ -0.11
CCDC28A-202ENST00000611852 FN3KQ9H479 309 aa14.38□□□□□ -0.11
CCDC28A-202ENST00000611852 UBTD1Q9HAC8 227 aa14.38□□□□□ -0.11
CCDC28A-202ENST00000611852 KRT84Q9NSB2 600 aa14.38□□□□□ -0.11
CCDC28A-202ENST00000611852 B9D1Q9UPM9 204 aa14.38□□□□□ -0.11
CCDC28A-202ENST00000611852 PDZD2O15018 2839 aa14.38□□□□□ -0.11
CCDC28A-202ENST00000611852 PLCE1Q9P212 2302 aa14.37□□□□□ -0.11
CCDC28A-202ENST00000611852 HS3ST1O14792 307 aa14.37□□□□□ -0.11
CCDC28A-202ENST00000611852 MITFO75030 526 aaPredicted RBP14.37□□□□□ -0.11
CCDC28A-202ENST00000611852 MMP7P09237 267 aaPredicted RBP14.37□□□□□ -0.11
CCDC28A-202ENST00000611852 GRK5P34947 590 aa14.37□□□□□ -0.11
CCDC28A-202ENST00000611852 CDK5Q00535 292 aa14.37□□□□□ -0.11
CCDC28A-202ENST00000611852 NAAAQ02083 359 aa14.37□□□□□ -0.11
CCDC28A-202ENST00000611852 ENDOGQ14249 297 aaKnown RBP14.37□□□□□ -0.11
CCDC28A-202ENST00000611852 GINS1Q14691 196 aa14.37□□□□□ -0.11
CCDC28A-202ENST00000611852 ZNF672Q499Z4 452 aaPredicted RBP14.37□□□□□ -0.11
CCDC28A-202ENST00000611852 ACSM5Q6NUN0 579 aa14.37□□□□□ -0.11
CCDC28A-202ENST00000611852 ZBTB46Q86UZ6 589 aa14.37□□□□□ -0.11
CCDC28A-202ENST00000611852 SLC37A3Q8NCC5 494 aa14.37□□□□□ -0.11
CCDC28A-202ENST00000611852 MS4A3Q96HJ5 214 aa14.37□□□□□ -0.11
CCDC28A-202ENST00000611852 RBM4Q9BWF3 364 aaKnown RBP14.37□□□□□ -0.11
CCDC28A-202ENST00000611852 RACGAP1Q9H0H5 632 aa14.37□□□□□ -0.11
CCDC28A-202ENST00000611852 KCNN2Q9H2S1 579 aa14.37□□□□□ -0.11
CCDC28A-202ENST00000611852 RNF121Q9H920 327 aa14.37□□□□□ -0.11
CCDC28A-202ENST00000611852 CMC2Q9NRP2 79 aa14.37□□□□□ -0.11
CCDC28A-202ENST00000611852 KLHL21Q9UJP4 597 aa14.37□□□□□ -0.11
CCDC28A-202ENST00000611852 MOKQ9UQ07 419 aa14.37□□□□□ -0.11
CCDC28A-202ENST00000611852 FKBP7Q9Y680 259 aa14.37□□□□□ -0.11
CCDC28A-202ENST00000611852 ANKRD17O75179 2603 aaKnown RBP14.37□□□□□ -0.11
CCDC28A-202ENST00000611852 NAV2Q8IVL1 2488 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 ATP6V1G2-DDX39BF2Z307 99 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 MPZL1O95297 269 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 IFNGP01579 166 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 CRYAAP02489 173 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 CST2P09228 141 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 CRISP1P54107 249 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 PPP2R2BQ00005 443 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 CRMP1Q14194 572 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 RAB39AQ14964 217 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 RCN1Q15293 331 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 TMEM53Q6P2H8 277 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 UGT2A3Q6UWM9 527 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 PAMR1Q6UXH9 720 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 ZNF584Q8IVC4 421 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 DEPDC4Q8N2C3 294 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 ZNF416Q9BWM5 594 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 EMC7Q9NPA0 242 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 TMEFF2Q9UIK5 374 aaPredicted RBP14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 FBXL3Q9UKT7 428 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 CSMD1Q96PZ7 3565 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 RIIAD1A6NNX1 92 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 GPANK1O95872 356 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 SERPINA5P05154 406 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 GAAP10253 952 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 ZNF32P17041 273 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 CALCRP30988 508 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 CDH11P55287 796 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 ESRRGP62508 458 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 GLO1Q04760 184 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 TMEM236Q5W0B7 351 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 OTPQ5XKR4 325 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 CDH24Q86UP0 819 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 PQLC1Q8N2U9 271 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 ZNF611Q8N823 705 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 FBXW5Q969U6 566 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 CIB1Q99828 191 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 KCNS3Q9BQ31 491 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 OSBPL10Q9BXB5 764 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 NMNAT2Q9BZQ4 307 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 SLC25A19Q9HC21 320 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 CCNB1IP1Q9NPC3 277 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 CISD1Q9NZ45 108 aaKnown RBP14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 ST6GALNAC2Q9UJ37 374 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 POU2F3Q9UKI9 436 aa14.36□□□□□ -0.11
CCDC28A-202ENST00000611852 IGHV2OR16-5A0A0B4J2B6 119 aa14.35□□□□□ -0.11
CCDC28A-202ENST00000611852 FAM171A2A8MVW0 826 aa14.35□□□□□ -0.11
CCDC28A-202ENST00000611852 ZNF3P17036 446 aa14.35□□□□□ -0.11
CCDC28A-202ENST00000611852 IGFBP5P24593 272 aa14.35□□□□□ -0.11
CCDC28A-202ENST00000611852 CENPAP49450 140 aa14.35□□□□□ -0.11
CCDC28A-202ENST00000611852 PCBD1P61457 104 aa14.35□□□□□ -0.11
CCDC28A-202ENST00000611852 LSM6P62312 80 aaKnown RBP14.35□□□□□ -0.11
CCDC28A-202ENST00000611852 HSF2Q03933 536 aa14.35□□□□□ -0.11
CCDC28A-202ENST00000611852 PTGES3Q15185 160 aaKnown RBP14.35□□□□□ -0.11
CCDC28A-202ENST00000611852 KCNMB1Q16558 191 aa14.35□□□□□ -0.11
CCDC28A-202ENST00000611852 PABPC1L2AQ5JQF8 200 aa14.35□□□□□ -0.11
CCDC28A-202ENST00000611852 B3GLCTQ6Y288 498 aa14.35□□□□□ -0.11
CCDC28A-202ENST00000611852 C20orf204Q6ZNR8 217 aa14.35□□□□□ -0.11
CCDC28A-202ENST00000611852 IL17RDQ8NFM7 739 aa14.35□□□□□ -0.11
CCDC28A-202ENST00000611852 SLC26A10Q8NG04 563 aa14.35□□□□□ -0.11
CCDC28A-202ENST00000611852 OR9Q1Q8NGQ5 310 aa14.35□□□□□ -0.11
CCDC28A-202ENST00000611852 OR2T4Q8NH00 348 aa14.35□□□□□ -0.11
CCDC28A-202ENST00000611852 C11orf40Q8WZ69 217 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms