RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 TXNDC15Q96J42 360 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 PLEKHA8Q96JA3 519 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 SORT1Q99523 831 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 SLC30A2Q9BRI3 323 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 TMEM38AQ9H6F2 299 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 ESM1Q9NQ30 184 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 MAN2C1Q9NTJ4 1040 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 ZNF224Q9NZL3 707 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 MYEF2Q9P2K5 600 aaKnown RBP5.34□□□□□ -1.55
CUX1-220ENST00000607092 SEC14L4Q9UDX3 406 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 OPN4Q9UHM6 478 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 NDRG4Q9ULP0 352 aaKnown RBP5.34□□□□□ -1.55
CUX1-220ENST00000607092 ANGPT4Q9Y264 503 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 LRCH1Q9Y2L9 728 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 CHST2Q9Y4C5 530 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 NPTNQ9Y639 398 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 GMEB1Q9Y692 573 aa5.34□□□□□ -1.55
CUX1-220ENST00000607092 LRRC30A6NM36 301 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 A8MXK9 166 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 J3QW42 95 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 UBOX5O94941 541 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 FAM107AO95990 144 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 CLPTM1O96005 669 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 IGF2P01344 180 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 QDPRP09417 244 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 PGA4P0DJD7 388 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 PGA3P0DJD8 388 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 ARAFP10398 606 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 UMPSP11172 480 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 HLA-DOBP13765 273 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 ZNF12P17014 697 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 BGNP21810 368 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 CBLP22681 906 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 STOMP27105 288 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 HTR2AP28223 471 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 IL12AP29459 219 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 GSTT1P30711 240 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 IFNA8P32881 189 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 MMP15P51511 669 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 HOXC5Q00444 222 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 BST1Q10588 318 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 ZNF154Q13106 437 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 SCARB2Q14108 478 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 TAF11Q15544 211 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 ZNF74Q16587 644 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 ZSCAN26Q16670 478 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 HIST3H3Q16695 136 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 TSTQ16762 297 aaKnown RBP5.33□□□□□ -1.56
CUX1-220ENST00000607092 ALKBH6Q3KRA9 238 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 MTX3Q5HYI7 312 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 PHYHD1Q5SRE7 291 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 C10orf128Q5T292 105 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 INTS11Q5TA45 600 aaKnown RBP5.33□□□□□ -1.56
CUX1-220ENST00000607092 SAMD5Q5TGI4 173 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 SYT9Q86SS6 491 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 PATL1Q86TB9 770 aaKnown RBP5.33□□□□□ -1.56
CUX1-220ENST00000607092 PTOV1Q86YD1 416 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 TMEM86BQ8N661 226 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 DEFB108BQ8NET1 73 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 OR52E2Q8NGJ4 325 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 BCAS4Q8TDM0 211 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 IPCEF1Q8WWN9 437 aaPredicted RBP5.33□□□□□ -1.56
CUX1-220ENST00000607092 GTF2H4Q92759 462 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 MAELQ96JY0 434 aaKnown RBP5.33□□□□□ -1.56
CUX1-220ENST00000607092 SAMD8Q96LT4 415 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 RBP7Q96R05 134 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 SH3GL3Q99963 347 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 PAIP2Q9BPZ3 127 aaKnown RBP5.33□□□□□ -1.56
CUX1-220ENST00000607092 POLR2J2Q9GZM3 115 aaKnown RBP5.33□□□□□ -1.56
CUX1-220ENST00000607092 FAM107BQ9H098 131 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 POLR2J3Q9H1A7 115 aaKnown RBP5.33□□□□□ -1.56
CUX1-220ENST00000607092 PATZ1Q9HBE1 687 aaKnown RBP5.33□□□□□ -1.56
CUX1-220ENST00000607092 KCNK9Q9NPC2 374 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 NOX4Q9NPH5 578 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 INTS9Q9NV88 658 aaKnown RBP5.33□□□□□ -1.56
CUX1-220ENST00000607092 PNPOQ9NVS9 261 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 TRIM33Q9UPN9 1127 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 ZNF281Q9Y2X9 895 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 TIMM10BQ9Y5J6 103 aa5.33□□□□□ -1.56
CUX1-220ENST00000607092 C5orf49A4QMS7 147 aa5.32□□□□□ -1.56
CUX1-220ENST00000607092 TRAPPC13A5PLN9 417 aa5.32□□□□□ -1.56
CUX1-220ENST00000607092 C12orf71A8MTZ7 269 aa5.32□□□□□ -1.56
CUX1-220ENST00000607092 C11orf98E9PRG8 122 aa5.32□□□□□ -1.56
CUX1-220ENST00000607092 EBAG9O00559 213 aa5.32□□□□□ -1.56
CUX1-220ENST00000607092 SPRY3O43610 288 aa5.32□□□□□ -1.56
CUX1-220ENST00000607092 TIMM8AO60220 97 aaPredicted RBP5.32□□□□□ -1.56
CUX1-220ENST00000607092 TGDSO95455 350 aa5.32□□□□□ -1.56
CUX1-220ENST00000607092 FSTL3O95633 263 aa5.32□□□□□ -1.56
CUX1-220ENST00000607092 KNG1P01042 644 aa5.32□□□□□ -1.56
CUX1-220ENST00000607092 IGHV1-46P01743 117 aa5.32□□□□□ -1.56
CUX1-220ENST00000607092 MMP7P09237 267 aaPredicted RBP5.32□□□□□ -1.56
CUX1-220ENST00000607092 SBK2P0C263 348 aa5.32□□□□□ -1.56
CUX1-220ENST00000607092 MAKP20794 623 aa5.32□□□□□ -1.56
CUX1-220ENST00000607092 CCNOP22674 350 aa5.32□□□□□ -1.56
CUX1-220ENST00000607092 MDH2P40926 338 aaKnown RBP5.32□□□□□ -1.56
CUX1-220ENST00000607092 RBM34P42696 430 aaKnown RBP5.32□□□□□ -1.56
CUX1-220ENST00000607092 SLC6A9P48067 706 aa5.32□□□□□ -1.56
CUX1-220ENST00000607092 MRPL19P49406 292 aaKnown RBP5.32□□□□□ -1.56
CUX1-220ENST00000607092 ZNF133P52736 654 aaPredicted RBP5.32□□□□□ -1.56
CUX1-220ENST00000607092 CDH12P55289 794 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms