RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 CIB4A0PJX0 185 aa12.58□□□□□ -0.4
UPF1-211ENST00000600868 WIPF3A6NGB9 483 aa12.58□□□□□ -0.4
UPF1-211ENST00000600868 TVP23AA6NH52 213 aa12.58□□□□□ -0.4
UPF1-211ENST00000600868 FAM90A27PA6NNH2 459 aa12.58□□□□□ -0.4
UPF1-211ENST00000600868 PYCARD-AS1I3L0S3 204 aa12.58□□□□□ -0.4
UPF1-211ENST00000600868 SEC14L2O76054 403 aa12.58□□□□□ -0.4
UPF1-211ENST00000600868 MPZL1O95297 269 aa12.58□□□□□ -0.4
UPF1-211ENST00000600868 FARS2O95363 451 aaKnown RBP12.58□□□□□ -0.4
UPF1-211ENST00000600868 CLDN14O95500 239 aa12.58□□□□□ -0.4
UPF1-211ENST00000600868 HLA-DQA2P01906 255 aa12.58□□□□□ -0.4
UPF1-211ENST00000600868 SCG5P05408 212 aa12.58□□□□□ -0.4
UPF1-211ENST00000600868 CST2P09228 141 aa12.58□□□□□ -0.4
UPF1-211ENST00000600868 B4GALT1P15291 398 aa12.58□□□□□ -0.4
UPF1-211ENST00000600868 MTNR1AP48039 350 aa12.58□□□□□ -0.4
UPF1-211ENST00000600868 ZNF91Q05481 1191 aa12.58□□□□□ -0.4
UPF1-211ENST00000600868 FAM27E3Q08E93 113 aa12.58□□□□□ -0.4
UPF1-211ENST00000600868 CDSNQ15517 529 aa12.58□□□□□ -0.4
UPF1-211ENST00000600868 SGCAQ16586 387 aa12.58□□□□□ -0.4
UPF1-211ENST00000600868 TEX30Q5JUR7 227 aa12.58□□□□□ -0.4
UPF1-211ENST00000600868 KLHL24Q6TFL4 600 aa12.58□□□□□ -0.4
UPF1-211ENST00000600868 B3GLCTQ6Y288 498 aa12.58□□□□□ -0.4
UPF1-211ENST00000600868 BHLHA15Q7RTS1 189 aaPredicted RBP12.58□□□□□ -0.4
UPF1-211ENST00000600868 TIGD4Q8IY51 512 aa12.58□□□□□ -0.4
UPF1-211ENST00000600868 CCDC36Q8IYA8 594 aa12.58□□□□□ -0.4
UPF1-211ENST00000600868 C17orf78Q8N4C9 275 aa12.58□□□□□ -0.4
UPF1-211ENST00000600868 STEAP2Q8NFT2 490 aa12.58□□□□□ -0.4
UPF1-211ENST00000600868 RNASE6Q93091 150 aaKnown RBP12.58□□□□□ -0.4
UPF1-211ENST00000600868 INTS14Q96SY0 518 aa12.58□□□□□ -0.4
UPF1-211ENST00000600868 USB1Q9BQ65 265 aaKnown RBP12.58□□□□□ -0.4
UPF1-211ENST00000600868 WACQ9BTA9 647 aa12.58□□□□□ -0.4
UPF1-211ENST00000600868 PCDHGB5Q9Y5G0 923 aa12.58□□□□□ -0.4
UPF1-211ENST00000600868 COMMD3-BMI1R4GMX3 469 aa12.58□□□□□ -0.4
UPF1-211ENST00000600868 UBR5O95071 2799 aaPredicted RBP12.58□□□□□ -0.4
UPF1-211ENST00000600868 A0A096LPE4 126 aa12.57□□□□□ -0.4
UPF1-211ENST00000600868 A0A1W2PPZ6 126 aa12.57□□□□□ -0.4
UPF1-211ENST00000600868 C16orf97H3BN30 126 aa12.57□□□□□ -0.4
UPF1-211ENST00000600868 RAD51DO75771 328 aa12.57□□□□□ -0.4
UPF1-211ENST00000600868 SBK2P0C263 348 aa12.57□□□□□ -0.4
UPF1-211ENST00000600868 CCDC159P0C7I6 412 aa12.57□□□□□ -0.4
UPF1-211ENST00000600868 DBTP11182 482 aaKnown RBP12.57□□□□□ -0.4
UPF1-211ENST00000600868 ZNF823P16415 610 aa12.57□□□□□ -0.4
UPF1-211ENST00000600868 IL32P24001 234 aa12.57□□□□□ -0.4
UPF1-211ENST00000600868 UGT2B10P36537 528 aa12.57□□□□□ -0.4
UPF1-211ENST00000600868 SLC15A1P46059 708 aa12.57□□□□□ -0.4
UPF1-211ENST00000600868 ENTPD1P49961 510 aa12.57□□□□□ -0.4
UPF1-211ENST00000600868 NUDT6P53370 316 aa12.57□□□□□ -0.4
UPF1-211ENST00000600868 TFF3Q07654 80 aa12.57□□□□□ -0.4
UPF1-211ENST00000600868 MEP1BQ16820 701 aa12.57□□□□□ -0.4
UPF1-211ENST00000600868 PCK2Q16822 640 aa12.57□□□□□ -0.4
UPF1-211ENST00000600868 TBRG1Q3YBR2 411 aa12.57□□□□□ -0.4
UPF1-211ENST00000600868 C1QTNF12Q5T7M4 302 aa12.57□□□□□ -0.4
UPF1-211ENST00000600868 LYPD4Q6UWN0 246 aa12.57□□□□□ -0.4
UPF1-211ENST00000600868 SLC16A9Q7RTY1 509 aa12.57□□□□□ -0.4
UPF1-211ENST00000600868 DPPA2Q7Z7J5 298 aa12.57□□□□□ -0.4
UPF1-211ENST00000600868 P2RY8Q86VZ1 359 aa12.57□□□□□ -0.4
UPF1-211ENST00000600868 SKA3Q8IX90 412 aa12.57□□□□□ -0.4
UPF1-211ENST00000600868 OR10H5Q8NGA6 315 aa12.57□□□□□ -0.4
UPF1-211ENST00000600868 RNFT2Q96EX2 444 aa12.57□□□□□ -0.4
UPF1-211ENST00000600868 CNN2Q99439 309 aaKnown RBP12.57□□□□□ -0.4
UPF1-211ENST00000600868 ZNF416Q9BWM5 594 aa12.57□□□□□ -0.4
UPF1-211ENST00000600868 YIPF3Q9GZM5 350 aa12.57□□□□□ -0.4
UPF1-211ENST00000600868 WDR76Q9H967 626 aa12.57□□□□□ -0.4
UPF1-211ENST00000600868 ADGRL4Q9HBW9 690 aa12.57□□□□□ -0.4
UPF1-211ENST00000600868 AMBNQ9NP70 447 aa12.57□□□□□ -0.4
UPF1-211ENST00000600868 EMC7Q9NPA0 242 aa12.57□□□□□ -0.4
UPF1-211ENST00000600868 LRCH1Q9Y2L9 728 aa12.57□□□□□ -0.4
UPF1-211ENST00000600868 ARPC4-TTLL3A0A0A6YYG9 625 aa12.56□□□□□ -0.4
UPF1-211ENST00000600868 NKX2-6A6NCS4 301 aa12.56□□□□□ -0.4
UPF1-211ENST00000600868 C12orf71A8MTZ7 269 aa12.56□□□□□ -0.4
UPF1-211ENST00000600868 SLC1A7O00341 560 aa12.56□□□□□ -0.4
UPF1-211ENST00000600868 ZNF593O00488 134 aaPredicted RBP12.56□□□□□ -0.4
UPF1-211ENST00000600868 SELENOFO60613 162 aa12.56□□□□□ -0.4
UPF1-211ENST00000600868 TMCC2O75069 709 aa12.56□□□□□ -0.4
UPF1-211ENST00000600868 CCKARP32238 428 aa12.56□□□□□ -0.4
UPF1-211ENST00000600868 PCBD1P61457 104 aa12.56□□□□□ -0.4
UPF1-211ENST00000600868 ADAM8P78325 824 aa12.56□□□□□ -0.4
UPF1-211ENST00000600868 RAB40BQ12829 278 aa12.56□□□□□ -0.4
UPF1-211ENST00000600868 ENDOGQ14249 297 aaKnown RBP12.56□□□□□ -0.4
UPF1-211ENST00000600868 TSC22D1Q15714 1073 aa12.56□□□□□ -0.4
UPF1-211ENST00000600868 HIKESHIQ53FT3 197 aa12.56□□□□□ -0.4
UPF1-211ENST00000600868 KLHL22Q53GT1 634 aa12.56□□□□□ -0.4
UPF1-211ENST00000600868 RBM48Q5RL73 367 aaKnown RBP12.56□□□□□ -0.4
UPF1-211ENST00000600868 UGT2A3Q6UWM9 527 aa12.56□□□□□ -0.4
UPF1-211ENST00000600868 SHFQ7M4L6 423 aa12.56□□□□□ -0.4
UPF1-211ENST00000600868 SYT9Q86SS6 491 aa12.56□□□□□ -0.4
UPF1-211ENST00000600868 ERI1Q8IV48 349 aaKnown RBP12.56□□□□□ -0.4
UPF1-211ENST00000600868 LRRC18Q8N456 261 aa12.56□□□□□ -0.4
UPF1-211ENST00000600868 BPIFB6Q8NFQ5 453 aa12.56□□□□□ -0.4
UPF1-211ENST00000600868 OR51G2Q8NGK0 314 aa12.56□□□□□ -0.4
UPF1-211ENST00000600868 HTRA1Q92743 480 aa12.56□□□□□ -0.4
UPF1-211ENST00000600868 LGALS12Q96DT0 336 aa12.56□□□□□ -0.4
UPF1-211ENST00000600868 SH3GL3Q99963 347 aa12.56□□□□□ -0.4
UPF1-211ENST00000600868 KCNN2Q9H2S1 579 aa12.56□□□□□ -0.4
UPF1-211ENST00000600868 OBP2BQ9NPH6 170 aa12.56□□□□□ -0.4
UPF1-211ENST00000600868 SLC17A5Q9NRA2 495 aa12.56□□□□□ -0.4
UPF1-211ENST00000600868 ZNF224Q9NZL3 707 aa12.56□□□□□ -0.4
UPF1-211ENST00000600868 CNOT2Q9NZN8 540 aaKnown RBP12.56□□□□□ -0.4
UPF1-211ENST00000600868 CYB5R1Q9UHQ9 305 aa12.56□□□□□ -0.4
UPF1-211ENST00000600868 EXOGQ9Y2C4 368 aaKnown RBP12.56□□□□□ -0.4
UPF1-211ENST00000600868 RELNP78509 3460 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms