RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 APOC3P02656 99 aa18.71■□□□□ 0.59
UPF1-207ENST00000599848 CSF3P09919 207 aa18.71■□□□□ 0.59
UPF1-207ENST00000599848 ADPRMQ3LIE5 342 aa18.71■□□□□ 0.59
UPF1-207ENST00000599848 OR52N1Q8NH53 320 aa18.71■□□□□ 0.59
UPF1-207ENST00000599848 OR2M2Q96R28 347 aa18.71■□□□□ 0.59
UPF1-207ENST00000599848 GPR87Q9BY21 358 aa18.71■□□□□ 0.59
UPF1-207ENST00000599848 XKRY2A2RUG3 117 aa18.71■□□□□ 0.59
UPF1-207ENST00000599848 HSPB6O14558 160 aa18.71■□□□□ 0.59
UPF1-207ENST00000599848 RAF1P04049 648 aa18.71■□□□□ 0.59
UPF1-207ENST00000599848 GABRG2P18507 467 aa18.71■□□□□ 0.59
UPF1-207ENST00000599848 RAB35Q15286 201 aa18.71■□□□□ 0.59
UPF1-207ENST00000599848 SHBQ15464 509 aa18.71■□□□□ 0.59
UPF1-207ENST00000599848 BTNL3Q6UXE8 466 aa18.71■□□□□ 0.59
UPF1-207ENST00000599848 TMEM108Q6UXF1 575 aa18.71■□□□□ 0.59
UPF1-207ENST00000599848 PTOV1Q86YD1 416 aa18.71■□□□□ 0.59
UPF1-207ENST00000599848 SLCO1B1Q9Y6L6 691 aa18.71■□□□□ 0.59
UPF1-207ENST00000599848 H0Y8X5 98 aa18.71■□□□□ 0.59
UPF1-207ENST00000599848 TERTO14746 1132 aaKnown RBP18.71■□□□□ 0.59
UPF1-207ENST00000599848 EDN3P14138 238 aa18.71■□□□□ 0.59
UPF1-207ENST00000599848 BPIFB3P59826 476 aa18.71■□□□□ 0.59
UPF1-207ENST00000599848 KDF1Q8NAX2 398 aaPredicted RBP18.71■□□□□ 0.59
UPF1-207ENST00000599848 HPSE2Q8WWQ2 592 aa18.71■□□□□ 0.59
UPF1-207ENST00000599848 PIGTQ969N2 578 aa18.71■□□□□ 0.59
UPF1-207ENST00000599848 M0R135 149 aa18.71■□□□□ 0.59
UPF1-207ENST00000599848 SULT1C4O75897 302 aa18.71■□□□□ 0.59
UPF1-207ENST00000599848 CYC1P08574 325 aa18.71■□□□□ 0.59
UPF1-207ENST00000599848 LAP3P28838 519 aa18.71■□□□□ 0.59
UPF1-207ENST00000599848 PTPN6P29350 595 aa18.71■□□□□ 0.59
UPF1-207ENST00000599848 MEX3DQ86XN8 651 aaKnown RBP18.71■□□□□ 0.59
UPF1-207ENST00000599848 Q8IYB0 196 aa18.71■□□□□ 0.59
UPF1-207ENST00000599848 ZNF799Q96GE5 643 aa18.71■□□□□ 0.59
UPF1-207ENST00000599848 SORT1Q99523 831 aa18.71■□□□□ 0.59
UPF1-207ENST00000599848 SLC17A4Q9Y2C5 497 aa18.71■□□□□ 0.59
UPF1-207ENST00000599848 GPR55Q9Y2T6 319 aaPredicted RBP18.71■□□□□ 0.59
UPF1-207ENST00000599848 ZIC2O95409 532 aaPredicted RBP18.7■□□□□ 0.58
UPF1-207ENST00000599848 MAKP20794 623 aa18.7■□□□□ 0.58
UPF1-207ENST00000599848 OR4F15Q8NGB8 312 aa18.7■□□□□ 0.58
UPF1-207ENST00000599848 OR1S2Q8NGQ3 325 aa18.7■□□□□ 0.58
UPF1-207ENST00000599848 ZNF75AQ96N20 296 aa18.7■□□□□ 0.58
UPF1-207ENST00000599848 COA3Q9Y2R0 106 aaPredicted RBP18.7■□□□□ 0.58
UPF1-207ENST00000599848 CHRNB1P11230 501 aa18.7■□□□□ 0.58
UPF1-207ENST00000599848 PPP2CBP62714 309 aa18.7■□□□□ 0.58
UPF1-207ENST00000599848 PPP2CAP67775 309 aa18.7■□□□□ 0.58
UPF1-207ENST00000599848 CRMP1Q14194 572 aa18.7■□□□□ 0.58
UPF1-207ENST00000599848 PLPP5Q8NEB5 264 aa18.7■□□□□ 0.58
UPF1-207ENST00000599848 CNTNAP3Q9BZ76 1288 aa18.7■□□□□ 0.58
UPF1-207ENST00000599848 OR10J4P0C629 311 aa18.7■□□□□ 0.58
UPF1-207ENST00000599848 NFATC3Q12968 1075 aa18.7■□□□□ 0.58
UPF1-207ENST00000599848 ZNF674Q2M3X9 581 aa18.7■□□□□ 0.58
UPF1-207ENST00000599848 ZNF691Q5VV52 312 aa18.7■□□□□ 0.58
UPF1-207ENST00000599848 ZDHHC23Q8IYP9 409 aa18.7■□□□□ 0.58
UPF1-207ENST00000599848 OR5AS1Q8N127 324 aa18.7■□□□□ 0.58
UPF1-207ENST00000599848 FGF14Q92915 247 aa18.7■□□□□ 0.58
UPF1-207ENST00000599848 RAB1CQ92928 201 aa18.7■□□□□ 0.58
UPF1-207ENST00000599848 NRSN2Q9GZP1 204 aa18.7■□□□□ 0.58
UPF1-207ENST00000599848 TRGV10A0A0A0MS01 117 aa18.7■□□□□ 0.58
UPF1-207ENST00000599848 RPS10-NUDT3A0A1W2PQS6 291 aa18.7■□□□□ 0.58
UPF1-207ENST00000599848 HPGDSO60760 199 aa18.7■□□□□ 0.58
UPF1-207ENST00000599848 GLIPR1L1Q6UWM5 242 aa18.7■□□□□ 0.58
UPF1-207ENST00000599848 RFLNAQ6ZTI6 216 aa18.7■□□□□ 0.58
UPF1-207ENST00000599848 OPALINQ96PE5 141 aa18.7■□□□□ 0.58
UPF1-207ENST00000599848 ARV1Q9H2C2 271 aa18.7■□□□□ 0.58
UPF1-207ENST00000599848 LIN28AQ9H9Z2 209 aaKnown RBP18.7■□□□□ 0.58
UPF1-207ENST00000599848 DIMT1Q9UNQ2 313 aaKnown RBP18.7■□□□□ 0.58
UPF1-207ENST00000599848 PLPP1O14494 284 aa18.7■□□□□ 0.58
UPF1-207ENST00000599848 EPHA8P29322 1005 aaPredicted RBP18.7■□□□□ 0.58
UPF1-207ENST00000599848 TRBV4-1A0A0J9YWV2 114 aa18.69■□□□□ 0.58
UPF1-207ENST00000599848 TCRBV3S1A0A5B6 114 aa18.69■□□□□ 0.58
UPF1-207ENST00000599848 OR2J2O76002 312 aa18.69■□□□□ 0.58
UPF1-207ENST00000599848 PIGAP37287 484 aa18.69■□□□□ 0.58
UPF1-207ENST00000599848 HMGN3Q15651 99 aa18.69■□□□□ 0.58
UPF1-207ENST00000599848 SLC16A11Q8NCK7 471 aa18.69■□□□□ 0.58
UPF1-207ENST00000599848 OR2AK2Q8NG84 335 aa18.69■□□□□ 0.58
UPF1-207ENST00000599848 APOBEC3DQ96AK3 386 aaPredicted RBP18.69■□□□□ 0.58
UPF1-207ENST00000599848 PSD2Q9BQI7 771 aa18.69■□□□□ 0.58
UPF1-207ENST00000599848 LINC01565O15544 149 aa18.69■□□□□ 0.58
UPF1-207ENST00000599848 TRAF3IP2O43734 574 aaPredicted RBP18.69■□□□□ 0.58
UPF1-207ENST00000599848 RFX2P48378 723 aa18.69■□□□□ 0.58
UPF1-207ENST00000599848 RPS16P62249 146 aaKnown RBP18.69■□□□□ 0.58
UPF1-207ENST00000599848 GLYR1Q49A26 553 aaPredicted RBP18.69■□□□□ 0.58
UPF1-207ENST00000599848 OR6K3Q8NGY3 331 aa18.69■□□□□ 0.58
UPF1-207ENST00000599848 ZNF251Q9BRH9 671 aa18.69■□□□□ 0.58
UPF1-207ENST00000599848 UFSP2Q9NUQ7 469 aa18.69■□□□□ 0.58
UPF1-207ENST00000599848 P4HTMQ9NXG6 502 aa18.69■□□□□ 0.58
UPF1-207ENST00000599848 PDE4DIPQ5VU43 2346 aa18.69■□□□□ 0.58
UPF1-207ENST00000599848 C5orf49A4QMS7 147 aa18.69■□□□□ 0.58
UPF1-207ENST00000599848 HOXC4P09017 264 aaPredicted RBP18.69■□□□□ 0.58
UPF1-207ENST00000599848 DTYMKP23919 212 aa18.69■□□□□ 0.58
UPF1-207ENST00000599848 DUSP8Q13202 625 aa18.69■□□□□ 0.58
UPF1-207ENST00000599848 PLK5Q496M5 336 aa18.69■□□□□ 0.58
UPF1-207ENST00000599848 LACC1Q8IV20 430 aa18.69■□□□□ 0.58
UPF1-207ENST00000599848 NT5CQ8TCD5 201 aa18.69■□□□□ 0.58
UPF1-207ENST00000599848 CDX2Q99626 313 aaPredicted RBP18.69■□□□□ 0.58
UPF1-207ENST00000599848 AMMECR1Q9Y4X0 333 aaPredicted RBP18.69■□□□□ 0.58
UPF1-207ENST00000599848 ANKRD61A6NGH8 418 aa18.69■□□□□ 0.58
UPF1-207ENST00000599848 HFEQ30201 348 aa18.69■□□□□ 0.58
UPF1-207ENST00000599848 ZNF468Q5VIY5 522 aaPredicted RBP18.69■□□□□ 0.58
UPF1-207ENST00000599848 IL34Q6ZMJ4 242 aa18.69■□□□□ 0.58
UPF1-207ENST00000599848 PPIL3Q9H2H8 161 aaKnown RBP18.69■□□□□ 0.58
UPF1-207ENST00000599848 ANKUB1A6NFN9 424 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms