RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 CDH10Q9Y6N8 788 aa11.98□□□□□ -0.49
UPF1-205ENST00000598209 CHD3Q12873 2000 aaKnown RBP11.98□□□□□ -0.49
UPF1-205ENST00000598209 IQCMA0A1B0GVH7 501 aa11.97□□□□□ -0.49
UPF1-205ENST00000598209 VSTM5A8MXK1 200 aa11.97□□□□□ -0.49
UPF1-205ENST00000598209 GNGT2O14610 69 aa11.97□□□□□ -0.49
UPF1-205ENST00000598209 SLC16A7O60669 478 aa11.97□□□□□ -0.49
UPF1-205ENST00000598209 NDUFS7O75251 213 aa11.97□□□□□ -0.49
UPF1-205ENST00000598209 KHDRBS3O75525 346 aaKnown RBP11.97□□□□□ -0.49
UPF1-205ENST00000598209 PTHP01270 115 aa11.97□□□□□ -0.49
UPF1-205ENST00000598209 IGHV4-39P01824 125 aa11.97□□□□□ -0.49
UPF1-205ENST00000598209 SCG5P05408 212 aa11.97□□□□□ -0.49
UPF1-205ENST00000598209 CST2P09228 141 aa11.97□□□□□ -0.49
UPF1-205ENST00000598209 OR4A8P0C604 315 aa11.97□□□□□ -0.49
UPF1-205ENST00000598209 BMP4P12644 408 aa11.97□□□□□ -0.49
UPF1-205ENST00000598209 HIST1H1CP16403 213 aaKnown RBP11.97□□□□□ -0.49
UPF1-205ENST00000598209 MSR1P21757 451 aa11.97□□□□□ -0.49
UPF1-205ENST00000598209 GALK2Q01415 458 aa11.97□□□□□ -0.49
UPF1-205ENST00000598209 SWI5Q1ZZU3 235 aa11.97□□□□□ -0.49
UPF1-205ENST00000598209 PABPC1L2AQ5JQF8 200 aa11.97□□□□□ -0.49
UPF1-205ENST00000598209 CLEC12AQ5QGZ9 265 aa11.97□□□□□ -0.49
UPF1-205ENST00000598209 RASSF6Q6ZTQ3 369 aa11.97□□□□□ -0.49
UPF1-205ENST00000598209 JAZF1Q86VZ6 243 aa11.97□□□□□ -0.49
UPF1-205ENST00000598209 OR10G2Q8NGC3 310 aa11.97□□□□□ -0.49
UPF1-205ENST00000598209 OR52L1Q8NGH7 329 aa11.97□□□□□ -0.49
UPF1-205ENST00000598209 FOXN4Q96NZ1 517 aa11.97□□□□□ -0.49
UPF1-205ENST00000598209 DGCR6LQ9BY27 220 aa11.97□□□□□ -0.49
UPF1-205ENST00000598209 LRMDAQ9H2I8 198 aa11.97□□□□□ -0.49
UPF1-205ENST00000598209 MMADHCQ9H3L0 296 aaPredicted RBP11.97□□□□□ -0.49
UPF1-205ENST00000598209 C1orf198Q9H425 327 aa11.97□□□□□ -0.49
UPF1-205ENST00000598209 CDH20Q9HBT6 801 aa11.97□□□□□ -0.49
UPF1-205ENST00000598209 POLE4Q9NR33 117 aa11.97□□□□□ -0.49
UPF1-205ENST00000598209 ZNF469Q96JG9 3925 aaPredicted RBP11.97□□□□□ -0.49
UPF1-205ENST00000598209 MAP1AP78559 2803 aaPredicted RBP11.96□□□□□ -0.49
UPF1-205ENST00000598209 B9A039 149 aa11.96□□□□□ -0.49
UPF1-205ENST00000598209 H7C417 338 aa11.96□□□□□ -0.49
UPF1-205ENST00000598209 IDH3BO43837 385 aa11.96□□□□□ -0.49
UPF1-205ENST00000598209 GPRIN2O60269 458 aa11.96□□□□□ -0.49
UPF1-205ENST00000598209 FKBP6O75344 327 aa11.96□□□□□ -0.49
UPF1-205ENST00000598209 RENP00797 406 aa11.96□□□□□ -0.49
UPF1-205ENST00000598209 CCL2P13500 99 aa11.96□□□□□ -0.49
UPF1-205ENST00000598209 GSTM3P21266 225 aa11.96□□□□□ -0.49
UPF1-205ENST00000598209 APEX1P27695 318 aaKnown RBP11.96□□□□□ -0.49
UPF1-205ENST00000598209 NOS3P29474 1203 aa11.96□□□□□ -0.49
UPF1-205ENST00000598209 PCBD1P61457 104 aa11.96□□□□□ -0.49
UPF1-205ENST00000598209 SNRPD2P62316 118 aaKnown RBP11.96□□□□□ -0.49
UPF1-205ENST00000598209 CBX1P83916 185 aa11.96□□□□□ -0.49
UPF1-205ENST00000598209 ENDOGQ14249 297 aaKnown RBP11.96□□□□□ -0.49
UPF1-205ENST00000598209 EFNB3Q15768 340 aa11.96□□□□□ -0.49
UPF1-205ENST00000598209 TBC1D28Q2M2D7 210 aa11.96□□□□□ -0.49
UPF1-205ENST00000598209 LEG1Q6P5S2 330 aa11.96□□□□□ -0.49
UPF1-205ENST00000598209 UGT2A3Q6UWM9 527 aa11.96□□□□□ -0.49
UPF1-205ENST00000598209 TMEM179BQ7Z7N9 219 aa11.96□□□□□ -0.49
UPF1-205ENST00000598209 PAQR4Q8N4S7 273 aaPredicted RBP11.96□□□□□ -0.49
UPF1-205ENST00000598209 PAPD5Q8NDF8 572 aaKnown RBP11.96□□□□□ -0.49
UPF1-205ENST00000598209 CPEB3Q8NE35 698 aaKnown RBP11.96□□□□□ -0.49
UPF1-205ENST00000598209 OR1J2Q8NGS2 313 aa11.96□□□□□ -0.49
UPF1-205ENST00000598209 OR4K13Q8NH42 304 aa11.96□□□□□ -0.49
UPF1-205ENST00000598209 AKR7LQ8NHP1 331 aa11.96□□□□□ -0.49
UPF1-205ENST00000598209 GIPC3Q8TF64 312 aa11.96□□□□□ -0.49
UPF1-205ENST00000598209 SLCO4A1Q96BD0 722 aa11.96□□□□□ -0.49
UPF1-205ENST00000598209 SNX18Q96RF0 628 aa11.96□□□□□ -0.49
UPF1-205ENST00000598209 NMNAT3Q96T66 252 aa11.96□□□□□ -0.49
UPF1-205ENST00000598209 ZNF416Q9BWM5 594 aa11.96□□□□□ -0.49
UPF1-205ENST00000598209 PLA2G12AQ9BZM1 189 aa11.96□□□□□ -0.49
UPF1-205ENST00000598209 OR2H1Q9GZK4 316 aa11.96□□□□□ -0.49
UPF1-205ENST00000598209 NUAK2Q9H093 628 aa11.96□□□□□ -0.49
UPF1-205ENST00000598209 YY1AP1Q9H869 796 aa11.96□□□□□ -0.49
UPF1-205ENST00000598209 BARX1Q9HBU1 254 aaPredicted RBP11.96□□□□□ -0.49
UPF1-205ENST00000598209 EMC7Q9NPA0 242 aa11.96□□□□□ -0.49
UPF1-205ENST00000598209 IL20Q9NYY1 176 aa11.96□□□□□ -0.49
UPF1-205ENST00000598209 COA3Q9Y2R0 106 aaPredicted RBP11.96□□□□□ -0.49
UPF1-205ENST00000598209 PMF1-BGLAPU3KQ54 211 aa11.96□□□□□ -0.49
UPF1-205ENST00000598209 VPS13CQ709C8 3753 aa11.96□□□□□ -0.5
UPF1-205ENST00000598209 ARRDC5A6NEK1 342 aa11.95□□□□□ -0.5
UPF1-205ENST00000598209 C12orf71A8MTZ7 269 aa11.95□□□□□ -0.5
UPF1-205ENST00000598209 CRABP1P29762 137 aa11.95□□□□□ -0.5
UPF1-205ENST00000598209 APLNRP35414 380 aa11.95□□□□□ -0.5
UPF1-205ENST00000598209 GLRXP35754 106 aa11.95□□□□□ -0.5
UPF1-205ENST00000598209 PSG4Q00888 419 aa11.95□□□□□ -0.5
UPF1-205ENST00000598209 RAB35Q15286 201 aa11.95□□□□□ -0.5
UPF1-205ENST00000598209 CLEC12BQ2HXU8 276 aa11.95□□□□□ -0.5
UPF1-205ENST00000598209 SLC35F1Q5T1Q4 408 aa11.95□□□□□ -0.5
UPF1-205ENST00000598209 DNM1P34Q6PK57 102 aa11.95□□□□□ -0.5
UPF1-205ENST00000598209 SYT9Q86SS6 491 aa11.95□□□□□ -0.5
UPF1-205ENST00000598209 GLB1L2Q8IW92 636 aa11.95□□□□□ -0.5
UPF1-205ENST00000598209 SDR9C7Q8NEX9 313 aa11.95□□□□□ -0.5
UPF1-205ENST00000598209 OR8D4Q8NGM9 314 aa11.95□□□□□ -0.5
UPF1-205ENST00000598209 TSSK2Q96PF2 358 aa11.95□□□□□ -0.5
UPF1-205ENST00000598209 FEVQ99581 238 aa11.95□□□□□ -0.5
UPF1-205ENST00000598209 NIPSNAP1Q9BPW8 284 aa11.95□□□□□ -0.5
UPF1-205ENST00000598209 WNT5BQ9H1J7 359 aa11.95□□□□□ -0.5
UPF1-205ENST00000598209 PLK3Q9H4B4 646 aa11.95□□□□□ -0.5
UPF1-205ENST00000598209 DLL4Q9NR61 685 aa11.95□□□□□ -0.5
UPF1-205ENST00000598209 TBC1D23Q9NUY8 699 aa11.95□□□□□ -0.5
UPF1-205ENST00000598209 CMAHPQ9Y471 501 aa11.95□□□□□ -0.5
UPF1-205ENST00000598209 TIMM10BQ9Y5J6 103 aa11.95□□□□□ -0.5
UPF1-205ENST00000598209 TEP1Q99973 2627 aaKnown RBP11.95□□□□□ -0.5
UPF1-205ENST00000598209 ACANP16112 2415 aa11.95□□□□□ -0.5
UPF1-205ENST00000598209 FLNAP21333 2647 aaKnown RBP11.94□□□□□ -0.5
UPF1-205ENST00000598209 TMEM129A0AVI4 362 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms