RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 ALPK2Q86TB3 2170 aa8.3□□□□□ -1.08
TRIM28-208ENST00000597172 IGLV1-36A0A0B4J1U3 117 aa8.3□□□□□ -1.08
TRIM28-208ENST00000597172 SH3D21A4FU49 640 aa8.3□□□□□ -1.08
TRIM28-208ENST00000597172 PHF1O43189 567 aaPredicted RBP8.3□□□□□ -1.08
TRIM28-208ENST00000597172 XPNPEP2O43895 674 aa8.3□□□□□ -1.08
TRIM28-208ENST00000597172 SLC16A7O60669 478 aa8.3□□□□□ -1.08
TRIM28-208ENST00000597172 SLC43A1O75387 559 aa8.3□□□□□ -1.08
TRIM28-208ENST00000597172 TNFSF13O75888 250 aa8.3□□□□□ -1.08
TRIM28-208ENST00000597172 GPANK1O95872 356 aa8.3□□□□□ -1.08
TRIM28-208ENST00000597172 RENP00797 406 aa8.3□□□□□ -1.08
TRIM28-208ENST00000597172 CGAP01215 116 aa8.3□□□□□ -1.08
TRIM28-208ENST00000597172 SCG5P05408 212 aa8.3□□□□□ -1.08
TRIM28-208ENST00000597172 QDPRP09417 244 aa8.3□□□□□ -1.08
TRIM28-208ENST00000597172 PYCR1P32322 319 aa8.3□□□□□ -1.08
TRIM28-208ENST00000597172 SLC15A1P46059 708 aa8.3□□□□□ -1.08
TRIM28-208ENST00000597172 NUDT6P53370 316 aa8.3□□□□□ -1.08
TRIM28-208ENST00000597172 CLRN1P58418 232 aa8.3□□□□□ -1.08
TRIM28-208ENST00000597172 CXCR4P61073 352 aa8.3□□□□□ -1.08
TRIM28-208ENST00000597172 PMPCAQ10713 525 aa8.3□□□□□ -1.08
TRIM28-208ENST00000597172 APOFQ13790 326 aa8.3□□□□□ -1.08
TRIM28-208ENST00000597172 LINC01590Q5TEZ4 76 aa8.3□□□□□ -1.08
TRIM28-208ENST00000597172 OR2A2Q6IF42 318 aa8.3□□□□□ -1.08
TRIM28-208ENST00000597172 KRT80Q6KB66 452 aa8.3□□□□□ -1.08
TRIM28-208ENST00000597172 VWA1Q6PCB0 445 aa8.3□□□□□ -1.08
TRIM28-208ENST00000597172 B3GNT6Q6ZMB0 384 aa8.3□□□□□ -1.08
TRIM28-208ENST00000597172 NOXO1Q8NFA2 376 aa8.3□□□□□ -1.08
TRIM28-208ENST00000597172 BPIFB6Q8NFQ5 453 aa8.3□□□□□ -1.08
TRIM28-208ENST00000597172 GGHQ92820 318 aa8.3□□□□□ -1.08
TRIM28-208ENST00000597172 KISS1RQ969F8 398 aaPredicted RBP8.3□□□□□ -1.08
TRIM28-208ENST00000597172 OTULINQ96BN8 352 aa8.3□□□□□ -1.08
TRIM28-208ENST00000597172 STARD4Q96DR4 205 aa8.3□□□□□ -1.08
TRIM28-208ENST00000597172 ZNF837Q96EG3 531 aaPredicted RBP8.3□□□□□ -1.08
TRIM28-208ENST00000597172 Q96MT0 163 aa8.3□□□□□ -1.08
TRIM28-208ENST00000597172 RBP7Q96R05 134 aa8.3□□□□□ -1.08
TRIM28-208ENST00000597172 PLSCR4Q9NRQ2 329 aa8.3□□□□□ -1.08
TRIM28-208ENST00000597172 SLC7A10Q9NS82 523 aa8.3□□□□□ -1.08
TRIM28-208ENST00000597172 PLCXD1Q9NUJ7 323 aa8.3□□□□□ -1.08
TRIM28-208ENST00000597172 CLN6Q9NWW5 311 aa8.3□□□□□ -1.08
TRIM28-208ENST00000597172 GLTPQ9NZD2 209 aa8.3□□□□□ -1.08
TRIM28-208ENST00000597172 COA3Q9Y2R0 106 aaPredicted RBP8.3□□□□□ -1.08
TRIM28-208ENST00000597172 FKBP7Q9Y680 259 aa8.3□□□□□ -1.08
TRIM28-208ENST00000597172 M0R3G1 203 aa8.29□□□□□ -1.08
TRIM28-208ENST00000597172 SLC1A7O00341 560 aa8.29□□□□□ -1.08
TRIM28-208ENST00000597172 PRODHO43272 600 aa8.29□□□□□ -1.08
TRIM28-208ENST00000597172 AKAP8O43823 692 aaKnown RBP8.29□□□□□ -1.08
TRIM28-208ENST00000597172 SMNDC1O75940 238 aaKnown RBP eCLIP8.29□□□□□ -1.083e-7■■■■□ 25.5
TRIM28-208ENST00000597172 GLCEO94923 617 aa8.29□□□□□ -1.08
TRIM28-208ENST00000597172 CRHP06850 196 aa8.29□□□□□ -1.08
TRIM28-208ENST00000597172 ADRA2AP08913 450 aa8.29□□□□□ -1.08
TRIM28-208ENST00000597172 PAICSP22234 425 aaKnown RBP8.29□□□□□ -1.08
TRIM28-208ENST00000597172 CRHBPP24387 322 aa8.29□□□□□ -1.08
TRIM28-208ENST00000597172 CRABP1P29762 137 aa8.29□□□□□ -1.08
TRIM28-208ENST00000597172 HTR1FP30939 366 aa8.29□□□□□ -1.08
TRIM28-208ENST00000597172 OR3A2P47893 321 aa8.29□□□□□ -1.08
TRIM28-208ENST00000597172 CSNK1A1P48729 337 aa8.29□□□□□ -1.08
TRIM28-208ENST00000597172 CDH11P55287 796 aa8.29□□□□□ -1.08
TRIM28-208ENST00000597172 FOXG1P55316 489 aaPredicted RBP8.29□□□□□ -1.08
TRIM28-208ENST00000597172 SIRPAP78324 504 aa8.29□□□□□ -1.08
TRIM28-208ENST00000597172 KLHL12Q53G59 568 aa8.29□□□□□ -1.08
TRIM28-208ENST00000597172 C10orf128Q5T292 105 aa8.29□□□□□ -1.08
TRIM28-208ENST00000597172 RIPPLY2Q5TAB7 128 aa8.29□□□□□ -1.08
TRIM28-208ENST00000597172 LYPD4Q6UWN0 246 aa8.29□□□□□ -1.08
TRIM28-208ENST00000597172 HDDC2Q7Z4H3 204 aa8.29□□□□□ -1.08
TRIM28-208ENST00000597172 BTLAQ7Z6A9 289 aa8.29□□□□□ -1.08
TRIM28-208ENST00000597172 ZNF786Q8N393 782 aa8.29□□□□□ -1.08
TRIM28-208ENST00000597172 ZNF511Q8NB15 262 aa8.29□□□□□ -1.08
TRIM28-208ENST00000597172 OR6N1Q8NGY5 312 aa8.29□□□□□ -1.08
TRIM28-208ENST00000597172 SGCDQ92629 289 aa8.29□□□□□ -1.08
TRIM28-208ENST00000597172 NSMAFQ92636 917 aa8.29□□□□□ -1.08
TRIM28-208ENST00000597172 FOXN4Q96NZ1 517 aa8.29□□□□□ -1.08
TRIM28-208ENST00000597172 RHNO1Q9BSD3 238 aa8.29□□□□□ -1.08
TRIM28-208ENST00000597172 YTHDF1Q9BYJ9 559 aaKnown RBP8.29□□□□□ -1.08
TRIM28-208ENST00000597172 LINC00470Q9BZP3 86 aa8.29□□□□□ -1.08
TRIM28-208ENST00000597172 RERGLQ9H628 205 aa8.29□□□□□ -1.08
TRIM28-208ENST00000597172 C12orf49Q9H741 205 aa8.29□□□□□ -1.08
TRIM28-208ENST00000597172 GPR35Q9HC97 309 aa8.29□□□□□ -1.08
TRIM28-208ENST00000597172 MRPS18AQ9NVS2 196 aaKnown RBP8.29□□□□□ -1.08
TRIM28-208ENST00000597172 FKBP14Q9NWM8 211 aa8.29□□□□□ -1.08
TRIM28-208ENST00000597172 H2AFY2Q9P0M6 372 aaPredicted RBP8.29□□□□□ -1.08
TRIM28-208ENST00000597172 PRSS50Q9UI38 385 aa8.29□□□□□ -1.08
TRIM28-208ENST00000597172 UGT2A1Q9Y4X1 527 aa8.29□□□□□ -1.08
TRIM28-208ENST00000597172 A0A0G2JNJ9 132 aa8.28□□□□□ -1.08
TRIM28-208ENST00000597172 TRIM64A6NGJ6 449 aa8.28□□□□□ -1.08
TRIM28-208ENST00000597172 RPL36A-HNRNPH2H7BZ11 118 aa8.28□□□□□ -1.08
TRIM28-208ENST00000597172 J3QRE1 110 aa8.28□□□□□ -1.08
TRIM28-208ENST00000597172 DHHO43323 396 aa8.28□□□□□ -1.08
TRIM28-208ENST00000597172 KHDRBS3O75525 346 aaKnown RBP8.28□□□□□ -1.08
TRIM28-208ENST00000597172 MPZL1O95297 269 aa8.28□□□□□ -1.08
TRIM28-208ENST00000597172 IL2RAP01589 272 aa8.28□□□□□ -1.08
TRIM28-208ENST00000597172 IGHV3-9P01782 118 aa8.28□□□□□ -1.08
TRIM28-208ENST00000597172 TFP02787 698 aa8.28□□□□□ -1.08
TRIM28-208ENST00000597172 CCDC159P0C7I6 412 aa8.28□□□□□ -1.08
TRIM28-208ENST00000597172 TMIGD3P0DMS9 266 aaPredicted RBP8.28□□□□□ -1.08
TRIM28-208ENST00000597172 DBTP11182 482 aaKnown RBP8.28□□□□□ -1.08
TRIM28-208ENST00000597172 CTSSP25774 331 aa8.28□□□□□ -1.08
TRIM28-208ENST00000597172 GSTT1P30711 240 aa8.28□□□□□ -1.08
TRIM28-208ENST00000597172 CHRNB4P30926 498 aa8.28□□□□□ -1.08
TRIM28-208ENST00000597172 CHN2P52757 468 aa8.28□□□□□ -1.08
TRIM28-208ENST00000597172 CSNK2BP67870 215 aa8.28□□□□□ -1.08
TRIM28-208ENST00000597172 ZNF91Q05481 1191 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms