RNA–Protein interactions for RNA: ENST00000592690.1

LIG3-215, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-215ENST00000592690 CCNB1IP1Q9NPC3 277 aa13.55□□□□□ -0.24
LIG3-215ENST00000592690 PMF1-BGLAPU3KQ54 211 aa13.55□□□□□ -0.24
LIG3-215ENST00000592690 U3KQV3 271 aa13.55□□□□□ -0.24
LIG3-215ENST00000592690 TMEM129A0AVI4 362 aa13.54□□□□□ -0.24
LIG3-215ENST00000592690 AHCYL1O43865 530 aa13.54□□□□□ -0.24
LIG3-215ENST00000592690 STAMBPO95630 424 aa13.54□□□□□ -0.24
LIG3-215ENST00000592690 TXNDC12O95881 172 aa13.54□□□□□ -0.24
LIG3-215ENST00000592690 CST2P09228 141 aa13.54□□□□□ -0.24
LIG3-215ENST00000592690 MSR1P21757 451 aa13.54□□□□□ -0.24
LIG3-215ENST00000592690 SLC6A6P31641 620 aa13.54□□□□□ -0.24
LIG3-215ENST00000592690 CDKN2AP42771 156 aaKnown RBP13.54□□□□□ -0.24
LIG3-215ENST00000592690 RPS6KA3P51812 740 aa13.54□□□□□ -0.24
LIG3-215ENST00000592690 HSF2Q03933 536 aa13.54□□□□□ -0.24
LIG3-215ENST00000592690 PLP2Q04941 152 aa13.54□□□□□ -0.24
LIG3-215ENST00000592690 ENDOGQ14249 297 aaKnown RBP13.54□□□□□ -0.24
LIG3-215ENST00000592690 OTPQ5XKR4 325 aa13.54□□□□□ -0.24
LIG3-215ENST00000592690 OR2T5Q6IEZ7 315 aa13.54□□□□□ -0.24
LIG3-215ENST00000592690 ZNF770Q6IQ21 691 aaPredicted RBP13.54□□□□□ -0.24
LIG3-215ENST00000592690 UGT2A3Q6UWM9 527 aa13.54□□□□□ -0.24
LIG3-215ENST00000592690 ZNF620Q6ZNG0 422 aa13.54□□□□□ -0.24
LIG3-215ENST00000592690 ADCK1Q86TW2 530 aa13.54□□□□□ -0.24
LIG3-215ENST00000592690 BIVMQ86UB2 503 aa13.54□□□□□ -0.24
LIG3-215ENST00000592690 OR2T29Q8NH02 315 aa13.54□□□□□ -0.24
LIG3-215ENST00000592690 ERMAPQ96PL5 475 aaPredicted RBP13.54□□□□□ -0.24
LIG3-215ENST00000592690 ZNF416Q9BWM5 594 aa13.54□□□□□ -0.24
LIG3-215ENST00000592690 TRIM15Q9C019 465 aa13.54□□□□□ -0.24
LIG3-215ENST00000592690 KCNN2Q9H2S1 579 aa13.54□□□□□ -0.24
LIG3-215ENST00000592690 OR51B6Q9H340 312 aa13.54□□□□□ -0.24
LIG3-215ENST00000592690 EGLN3Q9H6Z9 239 aa13.54□□□□□ -0.24
LIG3-215ENST00000592690 CDH20Q9HBT6 801 aa13.54□□□□□ -0.24
LIG3-215ENST00000592690 POLE4Q9NR33 117 aa13.54□□□□□ -0.24
LIG3-215ENST00000592690 VSX1Q9NZR4 365 aaPredicted RBP13.54□□□□□ -0.24
LIG3-215ENST00000592690 SLC7A8Q9UHI5 535 aa13.54□□□□□ -0.24
LIG3-215ENST00000592690 SAMHD1Q9Y3Z3 626 aaKnown RBP13.54□□□□□ -0.24
LIG3-215ENST00000592690 SPEF1Q9Y4P9 236 aa13.54□□□□□ -0.24
LIG3-215ENST00000592690 ZFHX3Q15911 3703 aa13.54□□□□□ -0.24
LIG3-215ENST00000592690 IQCMA0A1B0GVH7 501 aa13.53□□□□□ -0.24
LIG3-215ENST00000592690 AQP12BA6NM10 295 aa13.53□□□□□ -0.24
LIG3-215ENST00000592690 RNF223E7ERA6 249 aa13.53□□□□□ -0.24
LIG3-215ENST00000592690 DNAJC8O75937 253 aaPredicted RBP13.53□□□□□ -0.24
LIG3-215ENST00000592690 CCNB2O95067 398 aa13.53□□□□□ -0.24
LIG3-215ENST00000592690 FAM157BP0CG42 384 aa13.53□□□□□ -0.24
LIG3-215ENST00000592690 RAP2AP10114 183 aa13.53□□□□□ -0.24
LIG3-215ENST00000592690 APEHP13798 732 aaKnown RBP13.53□□□□□ -0.24
LIG3-215ENST00000592690 GLRXP35754 106 aa13.53□□□□□ -0.24
LIG3-215ENST00000592690 PSG4Q00888 419 aa13.53□□□□□ -0.24
LIG3-215ENST00000592690 DBPQ10586 325 aaPredicted RBP13.53□□□□□ -0.24
LIG3-215ENST00000592690 BNIP1Q12981 228 aa13.53□□□□□ -0.24
LIG3-215ENST00000592690 TBC1D28Q2M2D7 210 aa13.53□□□□□ -0.24
LIG3-215ENST00000592690 Q71RC1 249 aaPredicted RBP13.53□□□□□ -0.24
LIG3-215ENST00000592690 AQP12AQ8IXF9 295 aa13.53□□□□□ -0.24
LIG3-215ENST00000592690 ZNF525Q8N782 197 aa13.53□□□□□ -0.24
LIG3-215ENST00000592690 MAPK1IP1LQ8NDC0 245 aa13.53□□□□□ -0.24
LIG3-215ENST00000592690 CANT1Q8WVQ1 401 aa13.53□□□□□ -0.24
LIG3-215ENST00000592690 MRPL24Q96A35 216 aaKnown RBP13.53□□□□□ -0.24
LIG3-215ENST00000592690 DOK1Q99704 481 aa13.53□□□□□ -0.24
LIG3-215ENST00000592690 VRK1Q99986 396 aaPredicted RBP13.53□□□□□ -0.24
LIG3-215ENST00000592690 IFT27Q9BW83 186 aa13.53□□□□□ -0.24
LIG3-215ENST00000592690 MRPL37Q9BZE1 423 aaKnown RBP13.53□□□□□ -0.24
LIG3-215ENST00000592690 OR2H1Q9GZK4 316 aa13.53□□□□□ -0.24
LIG3-215ENST00000592690 WNT5BQ9H1J7 359 aa13.53□□□□□ -0.24
LIG3-215ENST00000592690 C1orf198Q9H425 327 aa13.53□□□□□ -0.24
LIG3-215ENST00000592690 RERGLQ9H628 205 aa13.53□□□□□ -0.24
LIG3-215ENST00000592690 REEP1Q9H902 201 aa13.53□□□□□ -0.24
LIG3-215ENST00000592690 FZR1Q9UM11 496 aa13.53□□□□□ -0.24
LIG3-215ENST00000592690 CMAHPQ9Y471 501 aa13.53□□□□□ -0.24
LIG3-215ENST00000592690 C2CD3Q4AC94 2353 aa13.53□□□□□ -0.24
LIG3-215ENST00000592690 IGHV4-30-2A0A087WSY4 118 aa13.52□□□□□ -0.25
LIG3-215ENST00000592690 DHRS12A0PJE2 317 aa13.52□□□□□ -0.25
LIG3-215ENST00000592690 VSTM5A8MXK1 200 aa13.52□□□□□ -0.25
LIG3-215ENST00000592690 DCTN6O00399 190 aa13.52□□□□□ -0.25
LIG3-215ENST00000592690 SLC16A7O60669 478 aa13.52□□□□□ -0.25
LIG3-215ENST00000592690 KHDRBS3O75525 346 aaKnown RBP13.52□□□□□ -0.25
LIG3-215ENST00000592690 SNAP29O95721 258 aa13.52□□□□□ -0.25
LIG3-215ENST00000592690 PTHP01270 115 aa13.52□□□□□ -0.25
LIG3-215ENST00000592690 GASTP01350 101 aa13.52□□□□□ -0.25
LIG3-215ENST00000592690 IGFBP1P08833 259 aaPredicted RBP13.52□□□□□ -0.25
LIG3-215ENST00000592690 APLNRP35414 380 aa13.52□□□□□ -0.25
LIG3-215ENST00000592690 GUCA1AP43080 201 aaPredicted RBP13.52□□□□□ -0.25
LIG3-215ENST00000592690 PPOXP50336 477 aa13.52□□□□□ -0.25
LIG3-215ENST00000592690 EFNA4P52798 201 aa13.52□□□□□ -0.25
LIG3-215ENST00000592690 ERVS71-1P61550 626 aa13.52□□□□□ -0.25
LIG3-215ENST00000592690 FLOT2Q14254 428 aa13.52□□□□□ -0.25
LIG3-215ENST00000592690 CLEC12AQ5QGZ9 265 aa13.52□□□□□ -0.25
LIG3-215ENST00000592690 LEG1Q6P5S2 330 aa13.52□□□□□ -0.25
LIG3-215ENST00000592690 LRP11Q86VZ4 500 aa13.52□□□□□ -0.25
LIG3-215ENST00000592690 ZCCHC24Q8N2G6 241 aaKnown RBP13.52□□□□□ -0.25
LIG3-215ENST00000592690 LINC00471Q8N535 108 aa13.52□□□□□ -0.25
LIG3-215ENST00000592690 AQP11Q8NBQ7 271 aa13.52□□□□□ -0.25
LIG3-215ENST00000592690 OR8D4Q8NGM9 314 aa13.52□□□□□ -0.25
LIG3-215ENST00000592690 OR4K13Q8NH42 304 aa13.52□□□□□ -0.25
LIG3-215ENST00000592690 POP5Q969H6 163 aaKnown RBP13.52□□□□□ -0.25
LIG3-215ENST00000592690 TSSK2Q96PF2 358 aa13.52□□□□□ -0.25
LIG3-215ENST00000592690 NMNAT3Q96T66 252 aa13.52□□□□□ -0.25
LIG3-215ENST00000592690 SYT3Q9BQG1 590 aa13.52□□□□□ -0.25
LIG3-215ENST00000592690 CHID1Q9BWS9 393 aa13.52□□□□□ -0.25
LIG3-215ENST00000592690 CADM1Q9BY67 442 aaKnown RBP13.52□□□□□ -0.25
LIG3-215ENST00000592690 PLA2G12AQ9BZM1 189 aa13.52□□□□□ -0.25
LIG3-215ENST00000592690 NUAK2Q9H093 628 aa13.52□□□□□ -0.25
LIG3-215ENST00000592690 MYEF2Q9P2K5 600 aaKnown RBP13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms